Wall clock time and date at job start Sat Apr 11 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48503 * 109.47201 * 269.99804 * 3 2 1 5 5 H 1.48503 * 109.47151 * 29.99650 * 3 2 1 6 6 H 1.48506 * 109.47274 * 149.99627 * 3 2 1 7 7 C 1.38953 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00018 * 0.02562 * 7 2 1 9 9 N 1.37095 * 119.99898 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99873 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00094 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99908 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46914 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99811 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46952 * 179.97438 * 14 13 12 16 16 C 1.53042 * 109.45663 * 175.00091 * 15 14 13 17 17 C 1.53201 * 109.30946 * 181.38615 * 16 15 14 18 18 N 1.46920 * 108.77364 * 305.36286 * 17 16 15 19 19 C 1.34777 * 120.63268 * 233.58247 * 18 17 16 20 20 O 1.21278 * 119.99854 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.46505 * 109.47064 * 180.02562 * 21 19 18 23 23 C 1.34771 * 119.99622 * 179.97438 * 22 21 19 24 24 N 1.34781 * 119.99489 * 180.02562 * 23 22 21 25 25 O 1.21584 * 120.00541 * 0.02562 * 23 22 21 26 26 C 1.46927 * 118.74032 * 53.86485 * 18 17 16 27 27 C 1.53040 * 109.46054 * 295.06809 * 15 14 13 28 28 H 0.97005 * 119.99890 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00686 * 0.02562 * 9 7 2 30 30 H 1.08990 * 109.47253 * 60.00140 * 12 10 9 31 31 H 1.09005 * 109.47221 * 300.00004 * 12 10 9 32 32 H 1.00893 * 110.99511 * 303.95046 * 13 12 10 33 33 H 1.09006 * 109.47323 * 59.99918 * 14 13 12 34 34 H 1.09004 * 109.47279 * 299.99893 * 14 13 12 35 35 H 1.08998 * 109.45875 * 55.02985 * 15 14 13 36 36 H 1.09000 * 109.50220 * 61.43976 * 16 15 14 37 37 H 1.08999 * 109.52344 * 301.34940 * 16 15 14 38 38 H 1.09001 * 109.58322 * 185.57561 * 17 16 15 39 39 H 1.09001 * 109.70341 * 65.22135 * 17 16 15 40 40 H 1.09002 * 109.47152 * 60.00245 * 21 19 18 41 41 H 1.09001 * 109.46980 * 300.00345 * 21 19 18 42 42 H 0.96996 * 119.99606 * 0.02562 * 22 21 19 43 43 H 0.97003 * 120.00377 * 0.02562 * 24 23 22 44 44 H 0.97002 * 119.99874 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.58858 * 65.92197 * 26 18 17 46 46 H 1.08995 * 109.58867 * 186.34993 * 26 18 17 47 47 H 1.08999 * 109.49509 * 298.56572 * 27 15 14 48 48 H 1.09002 * 109.49899 * 58.66254 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5606 -2.3706 0.0022 13 7 6.0503 -3.7557 0.0014 14 6 7.5187 -3.7949 0.0019 15 6 7.9900 -5.2505 0.0016 16 6 9.5147 -5.2927 -0.1236 17 6 9.9800 -6.7519 -0.1584 18 7 9.4523 -7.4448 1.0248 19 6 10.2772 -8.1178 1.8512 20 8 11.4675 -8.1552 1.6216 21 6 9.7206 -8.8240 3.0606 22 7 10.8111 -9.4751 3.7909 23 6 10.5483 -10.1708 4.9148 24 7 11.5516 -10.7694 5.5869 25 8 9.4062 -10.2585 5.3225 26 6 8.0074 -7.3953 1.2867 27 6 7.5649 -5.9243 1.3083 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3634 0.0014 30 1 5.9233 -1.8573 0.8926 31 1 5.9247 -1.8564 -0.8873 32 1 5.6742 -4.2726 0.7820 33 1 7.8954 -3.2916 0.8924 34 1 7.8960 -3.2903 -0.8876 35 1 7.5417 -5.7772 -0.8409 36 1 9.9641 -4.7879 0.7315 37 1 9.8187 -4.7919 -1.0428 38 1 11.0693 -6.7884 -0.1478 39 1 9.6070 -7.2351 -1.0615 40 1 8.9971 -9.5745 2.7422 41 1 9.2302 -8.0994 3.7107 42 1 11.7223 -9.4048 3.4658 43 1 12.4629 -10.6991 5.2618 44 1 11.3625 -11.2704 6.3956 45 1 7.4748 -7.9284 0.4990 46 1 7.7948 -7.8565 2.2511 47 1 8.0327 -5.4135 2.1499 48 1 6.4807 -5.8732 1.4081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204443740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:57 Heat of formation + Delta-G solvation = -98.983772 kcal Electronic energy + Delta-G solvation = -29045.237303 eV Core-core repulsion = 24749.016532 eV Total energy + Delta-G solvation = -4296.220771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94632 -39.95108 -38.68181 -38.08847 -35.74879 -34.84639 -34.04090 -33.95805 -33.00796 -31.68418 -31.50652 -28.84562 -27.68753 -25.75973 -23.87760 -23.78296 -22.47672 -21.58262 -20.79319 -19.71780 -19.38700 -18.85524 -18.35590 -17.84434 -17.16013 -16.50066 -16.24059 -16.18967 -15.67358 -15.35096 -15.12362 -14.90464 -14.69736 -14.61373 -14.44533 -14.25711 -14.03702 -13.60485 -13.46826 -13.23971 -13.10288 -12.85101 -12.68350 -12.52430 -12.15088 -11.95267 -11.74908 -11.61949 -11.19189 -11.05199 -10.79758 -10.77241 -10.73902 -10.60541 -10.30039 -10.15518 -9.98764 -9.58604 -9.57950 -9.11345 -8.60646 -8.21195 -8.16024 -6.32275 -3.83745 2.06028 2.14495 2.73108 2.77889 3.01126 3.05785 3.14014 3.72494 3.89291 4.02308 4.05745 4.09401 4.35511 4.50529 4.62972 4.70616 4.83685 4.86345 4.88508 4.92017 5.01150 5.16877 5.21087 5.33590 5.37414 5.40242 5.51978 5.59195 5.63340 5.65761 5.75628 5.79280 5.81402 5.89769 5.91771 6.10108 6.16541 6.24020 6.46611 6.86546 7.06683 7.47727 7.54494 7.57210 7.59624 8.13304 8.16935 8.58471 8.93750 9.41218 9.81282 10.80816 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.001695 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.783294 B =16518.270316 C =17391.202189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.669 5.669 14 C 0.064 3.936 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.113 3.887 18 N -0.604 5.604 19 C 0.512 3.488 20 O -0.544 6.544 21 C 0.119 3.881 22 N -0.735 5.735 23 C 0.708 3.292 24 N -0.865 5.865 25 O -0.594 6.594 26 C 0.102 3.898 27 C -0.135 4.135 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.349 0.651 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.408 0.592 43 H 0.398 0.602 44 H 0.416 0.584 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.567 -14.936 4.978 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.302 5.302 14 C -0.066 4.066 15 C -0.105 4.105 16 C -0.166 4.166 17 C -0.009 4.009 18 N -0.337 5.337 19 C 0.300 3.700 20 O -0.422 6.422 21 C -0.009 4.009 22 N -0.395 5.395 23 C 0.406 3.594 24 N -0.434 5.434 25 O -0.472 6.472 26 C -0.020 4.020 27 C -0.173 4.173 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.245 0.755 43 H 0.226 0.774 44 H 0.249 0.751 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 26.474 -15.580 4.373 31.028 hybrid contribution 1.426 1.713 0.913 2.409 sum 27.900 -13.868 5.286 31.601 Atomic orbital electron populations 1.69621 1.05644 1.27499 1.49312 1.25039 0.95491 0.97971 0.97636 0.86669 0.79732 0.84050 0.78898 1.19598 1.20186 1.19561 1.19436 0.79251 0.96643 1.48118 0.86266 1.42211 1.07542 1.06174 1.67065 1.19715 0.88207 0.84562 0.84005 1.90561 1.69443 1.30932 1.53748 1.21704 0.95023 0.90558 1.01238 1.60105 1.06062 1.12584 1.51477 1.21994 0.88452 0.95688 1.00420 1.21161 0.94608 0.96223 0.98513 1.21936 0.95812 0.95886 1.02985 1.21655 1.00576 0.91958 0.86760 1.48073 1.08199 1.51330 1.26096 1.20475 0.86519 0.78971 0.84037 1.90676 1.15443 1.62032 1.74090 1.20951 0.90015 0.97996 0.91965 1.44722 1.11642 1.56354 1.26768 1.15839 0.84975 0.78509 0.80058 1.42929 1.09610 1.59219 1.31594 1.91002 1.19875 1.66563 1.69733 1.22011 0.79254 0.98028 1.02721 1.22105 1.02481 0.94549 0.98186 0.91606 0.79699 0.93853 0.89507 0.83020 0.95580 0.90933 0.89516 0.91513 0.90253 0.88916 0.90977 0.88224 0.88218 0.75503 0.77386 0.75126 0.90146 0.89321 0.91488 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -13.91 5.09 -10.96 -0.06 -13.97 16 10 C 0.45 10.01 7.82 -10.98 -0.09 9.93 16 11 O -0.56 -14.89 15.78 5.55 0.09 -14.80 16 12 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 13 N -0.67 -9.56 6.12 -115.05 -0.70 -10.27 16 14 C 0.06 0.66 5.14 -3.83 -0.02 0.64 16 15 C -0.09 -0.71 2.36 -90.58 -0.21 -0.93 16 16 C -0.13 -0.89 5.36 -26.61 -0.14 -1.03 16 17 C 0.11 0.81 6.43 -3.71 -0.02 0.79 16 18 N -0.60 -4.52 2.97 -172.50 -0.51 -5.04 16 19 C 0.51 4.40 7.77 -10.98 -0.09 4.31 16 20 O -0.54 -6.03 15.08 5.56 0.08 -5.95 16 21 C 0.12 0.89 4.50 -5.19 -0.02 0.87 16 22 N -0.73 -5.56 5.53 -66.41 -0.37 -5.92 16 23 C 0.71 6.30 8.84 -86.92 -0.77 5.53 16 24 N -0.87 -4.00 8.88 27.63 0.25 -3.76 16 25 O -0.59 -7.87 17.18 5.29 0.09 -7.78 16 26 C 0.10 0.66 6.37 -3.48 -0.02 0.64 16 27 C -0.13 -1.04 5.18 -26.39 -0.14 -1.18 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.35 5.13 6.65 -39.30 -0.26 4.87 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.75 7.01 -51.93 -0.36 0.39 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.70 7.93 -51.93 -0.41 0.29 16 41 H 0.10 0.73 7.70 -51.93 -0.40 0.33 16 42 H 0.41 2.67 7.45 -40.82 -0.30 2.37 16 43 H 0.40 0.72 8.84 -40.82 -0.36 0.36 16 44 H 0.42 1.52 8.93 -40.82 -0.36 1.15 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.47 5.93 -51.93 -0.31 0.16 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.76 6.62 -51.93 -0.34 0.42 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -37.21 390.59 -8.12 -45.33 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.14 Total: 14.02 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -1.80 Total: 12.58 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.62 Total: -63.79 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: 0.26 Total: -28.53 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.21 -8.12 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204443740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.652 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds