Wall clock time and date at job start Sat Apr 11 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48503 * 109.47201 * 269.99804 * 3 2 1 5 5 H 1.48503 * 109.47151 * 29.99650 * 3 2 1 6 6 H 1.48506 * 109.47274 * 149.99627 * 3 2 1 7 7 C 1.38953 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00018 * 0.02562 * 7 2 1 9 9 N 1.37095 * 119.99898 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99873 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00094 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99908 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46914 * 180.02562 * 12 10 9 14 14 C 1.46897 * 110.99811 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46952 * 179.97438 * 14 13 12 16 16 C 1.53042 * 109.45663 * 175.00091 * 15 14 13 17 17 C 1.53201 * 109.30946 * 181.38615 * 16 15 14 18 18 N 1.46920 * 108.77364 * 305.36286 * 17 16 15 19 19 C 1.34777 * 120.63268 * 233.58247 * 18 17 16 20 20 O 1.21278 * 119.99854 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.46505 * 109.47064 * 180.02562 * 21 19 18 23 23 C 1.34771 * 119.99622 * 179.97438 * 22 21 19 24 24 N 1.34781 * 119.99489 * 180.02562 * 23 22 21 25 25 O 1.21584 * 120.00541 * 0.02562 * 23 22 21 26 26 C 1.46927 * 118.74032 * 53.86485 * 18 17 16 27 27 C 1.53040 * 109.46054 * 295.06809 * 15 14 13 28 28 H 0.97005 * 119.99890 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00686 * 0.02562 * 9 7 2 30 30 H 1.08990 * 109.47253 * 60.00140 * 12 10 9 31 31 H 1.09005 * 109.47221 * 300.00004 * 12 10 9 32 32 H 1.00893 * 110.99511 * 303.95046 * 13 12 10 33 33 H 1.09006 * 109.47323 * 59.99918 * 14 13 12 34 34 H 1.09004 * 109.47279 * 299.99893 * 14 13 12 35 35 H 1.08998 * 109.45875 * 55.02985 * 15 14 13 36 36 H 1.09000 * 109.50220 * 61.43976 * 16 15 14 37 37 H 1.08999 * 109.52344 * 301.34940 * 16 15 14 38 38 H 1.09001 * 109.58322 * 185.57561 * 17 16 15 39 39 H 1.09001 * 109.70341 * 65.22135 * 17 16 15 40 40 H 1.09002 * 109.47152 * 60.00245 * 21 19 18 41 41 H 1.09001 * 109.46980 * 300.00345 * 21 19 18 42 42 H 0.96996 * 119.99606 * 0.02562 * 22 21 19 43 43 H 0.97003 * 120.00377 * 0.02562 * 24 23 22 44 44 H 0.97002 * 119.99874 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.58858 * 65.92197 * 26 18 17 46 46 H 1.08995 * 109.58867 * 186.34993 * 26 18 17 47 47 H 1.08999 * 109.49509 * 298.56572 * 27 15 14 48 48 H 1.09002 * 109.49899 * 58.66254 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5606 -2.3706 0.0022 13 7 6.0503 -3.7557 0.0014 14 6 7.5187 -3.7949 0.0019 15 6 7.9900 -5.2505 0.0016 16 6 9.5147 -5.2927 -0.1236 17 6 9.9800 -6.7519 -0.1584 18 7 9.4523 -7.4448 1.0248 19 6 10.2772 -8.1178 1.8512 20 8 11.4675 -8.1552 1.6216 21 6 9.7206 -8.8240 3.0606 22 7 10.8111 -9.4751 3.7909 23 6 10.5483 -10.1708 4.9148 24 7 11.5516 -10.7694 5.5869 25 8 9.4062 -10.2585 5.3225 26 6 8.0074 -7.3953 1.2867 27 6 7.5649 -5.9243 1.3083 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3634 0.0014 30 1 5.9233 -1.8573 0.8926 31 1 5.9247 -1.8564 -0.8873 32 1 5.6742 -4.2726 0.7820 33 1 7.8954 -3.2916 0.8924 34 1 7.8960 -3.2903 -0.8876 35 1 7.5417 -5.7772 -0.8409 36 1 9.9641 -4.7879 0.7315 37 1 9.8187 -4.7919 -1.0428 38 1 11.0693 -6.7884 -0.1478 39 1 9.6070 -7.2351 -1.0615 40 1 8.9971 -9.5745 2.7422 41 1 9.2302 -8.0994 3.7107 42 1 11.7223 -9.4048 3.4658 43 1 12.4629 -10.6991 5.2618 44 1 11.3625 -11.2704 6.3956 45 1 7.4748 -7.9284 0.4990 46 1 7.7948 -7.8565 2.2511 47 1 8.0327 -5.4135 2.1499 48 1 6.4807 -5.8732 1.4081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204443740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:57 Heat of formation + Delta-G solvation = -132.968094 kcal Electronic energy + Delta-G solvation = -29046.710974 eV Core-core repulsion = 24749.016532 eV Total energy + Delta-G solvation = -4297.694442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60249 -40.63728 -40.28015 -38.99544 -36.76828 -35.90248 -35.55356 -34.56764 -33.93260 -33.67120 -32.13432 -29.72879 -28.65460 -27.04969 -25.30516 -24.41298 -23.30683 -22.22897 -21.50246 -21.24605 -20.37326 -20.19756 -19.43928 -18.40599 -17.93690 -17.69326 -17.19354 -17.02695 -16.79290 -16.61559 -16.03390 -15.85288 -15.68575 -15.45726 -15.31824 -15.19083 -15.01080 -14.77587 -14.47597 -14.43001 -14.29216 -13.98116 -13.70182 -13.53803 -13.22877 -13.17660 -12.92687 -12.67386 -12.40478 -12.19211 -11.98169 -11.81085 -11.59937 -11.50763 -11.44650 -11.40714 -10.96968 -10.77869 -10.41851 -10.23825 -10.15486 -9.73406 -9.28239 -8.40529 -6.01394 1.30733 1.36424 1.39704 1.45143 1.55595 1.97014 2.10154 2.15842 2.23705 2.75441 3.15953 3.28153 3.44802 3.60488 3.76857 3.85419 3.97510 4.12544 4.19387 4.26895 4.28644 4.34517 4.40849 4.44533 4.54863 4.57956 4.67786 4.76536 4.82015 4.89536 4.99680 5.06285 5.06876 5.17970 5.26682 5.48444 5.51487 5.54445 5.80092 5.92453 6.00498 6.08915 6.24381 6.44758 6.60783 6.89115 6.91287 7.00364 7.40966 7.58167 7.97575 8.77080 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.001695 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.783294 B =16518.270316 C =17391.202189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.613 6.613 12 C 0.061 3.939 13 N -0.686 5.686 14 C 0.067 3.933 15 C -0.081 4.081 16 C -0.117 4.117 17 C 0.111 3.889 18 N -0.600 5.600 19 C 0.515 3.485 20 O -0.571 6.571 21 C 0.119 3.881 22 N -0.730 5.730 23 C 0.703 3.297 24 N -0.846 5.846 25 O -0.641 6.641 26 C 0.103 3.897 27 C -0.132 4.132 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.344 0.656 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.414 0.586 43 H 0.414 0.586 44 H 0.423 0.577 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.067 0.933 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.986 -13.386 4.982 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.071 4.071 13 N -0.320 5.320 14 C -0.062 4.062 15 C -0.100 4.100 16 C -0.156 4.156 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.303 3.697 20 O -0.451 6.451 21 C -0.009 4.009 22 N -0.389 5.389 23 C 0.401 3.599 24 N -0.415 5.415 25 O -0.523 6.523 26 C -0.019 4.019 27 C -0.171 4.171 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.164 0.836 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.252 0.748 43 H 0.245 0.755 44 H 0.256 0.744 45 H 0.104 0.896 46 H 0.119 0.881 47 H 0.086 0.914 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 29.971 -14.041 4.366 33.383 hybrid contribution 0.338 1.080 0.894 1.442 sum 30.309 -12.961 5.260 33.381 Atomic orbital electron populations 1.69806 1.08156 1.29220 1.50323 1.26116 0.96460 1.02713 0.96076 0.85361 0.79473 0.76725 0.79921 1.18177 1.20113 1.15427 1.19018 0.81576 0.94930 1.50361 0.92655 1.42044 1.05786 1.07668 1.67843 1.21035 0.91086 0.83276 0.81032 1.90540 1.71423 1.32756 1.55065 1.21628 0.89385 0.92267 1.03836 1.60122 1.08605 1.11623 1.51642 1.22073 0.85751 0.97032 1.01316 1.21099 0.95429 0.95102 0.98344 1.21845 0.94484 0.95674 1.03549 1.21698 1.00158 0.92271 0.86931 1.48121 1.08457 1.50794 1.25885 1.20582 0.86157 0.78801 0.84173 1.90663 1.16523 1.63150 1.74804 1.20970 0.90117 0.98156 0.91620 1.44665 1.11949 1.55926 1.26391 1.16049 0.84918 0.78648 0.80291 1.42763 1.09657 1.57908 1.31170 1.90968 1.21978 1.68381 1.70988 1.22065 0.78633 0.97468 1.03695 1.22056 1.01712 0.95276 0.98037 0.91174 0.77489 0.90842 0.86862 0.83622 0.94483 0.89983 0.90372 0.91748 0.88957 0.89691 0.90145 0.87686 0.87913 0.74818 0.75524 0.74377 0.89573 0.88137 0.91382 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.97 38.39 27.74 68.60 1.90 40.29 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.23 -7.67 6.52 99.48 0.65 -7.02 16 7 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 8 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -27.51 5.09 -306.98 -1.56 -29.08 16 10 C 0.45 19.77 7.82 87.66 0.69 20.45 16 11 O -0.61 -33.39 15.78 -3.06 -0.05 -33.44 16 12 C 0.06 1.77 6.17 85.56 0.53 2.30 16 13 N -0.69 -18.30 6.12 -517.91 -3.17 -21.48 16 14 C 0.07 1.17 5.14 86.30 0.44 1.62 16 15 C -0.08 -1.17 2.36 -10.77 -0.03 -1.20 16 16 C -0.12 -1.35 5.36 30.68 0.16 -1.18 16 17 C 0.11 1.42 6.43 86.37 0.56 1.97 16 18 N -0.60 -8.14 2.97 -818.05 -2.43 -10.57 16 19 C 0.51 8.26 7.77 87.66 0.68 8.95 16 20 O -0.57 -12.12 15.08 -3.02 -0.05 -12.16 16 21 C 0.12 1.69 4.50 85.63 0.39 2.08 16 22 N -0.73 -10.39 5.53 -482.29 -2.67 -13.06 16 23 C 0.70 11.99 8.84 179.05 1.58 13.57 16 24 N -0.85 -6.74 8.88 -184.75 -1.64 -8.38 16 25 O -0.64 -16.94 17.18 -3.98 -0.07 -17.01 16 26 C 0.10 1.21 6.37 86.51 0.55 1.76 16 27 C -0.13 -1.87 5.18 30.82 0.16 -1.71 16 28 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 29 H 0.39 14.91 5.76 -92.71 -0.53 14.37 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.34 9.80 6.65 -89.70 -0.60 9.20 16 33 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.27 7.01 -2.39 -0.02 1.25 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 1.39 7.93 -2.39 -0.02 1.37 16 41 H 0.10 1.41 7.70 -2.39 -0.02 1.39 16 42 H 0.41 4.98 7.45 -92.71 -0.69 4.29 16 43 H 0.41 0.78 8.84 -92.71 -0.82 -0.04 16 44 H 0.42 2.57 8.93 -92.71 -0.83 1.74 16 45 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.10 0.95 5.93 -2.39 -0.01 0.93 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 1.28 6.62 -2.39 -0.02 1.26 16 Total: -1.00 -86.16 390.59 -4.87 -91.03 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -2.48 Total: 39.85 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 7.03 Total: 29.88 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -11.17 Total: -138.44 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -0.16 Total: -62.62 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.90 Total: 40.29 kcal Total: -86.16 -4.87 -91.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204443740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.942 kcal (2) G-P(sol) polarization free energy of solvation -86.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds