Wall clock time and date at job start Sat Apr 11 2020 06:22:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.39914 * 125.99651 * 2 1
4 4 C 1.38330 * 107.12010 * 179.97438 * 3 2 1
5 5 C 1.41357 * 131.72660 * 180.02562 * 4 3 2
6 6 C 1.35519 * 119.54990 * 179.65621 * 5 4 3
7 7 C 1.46447 * 118.95913 * 0.58881 * 6 5 4
8 8 C 1.47490 * 120.20061 * 179.69534 * 7 6 5
9 9 O 1.21607 * 119.99799 * 179.72936 * 8 7 6
10 10 N 1.34776 * 119.99960 * 359.73164 * 8 7 6
11 11 C 1.46497 * 119.99952 * 180.02562 * 10 8 7
12 12 H 1.09005 * 110.05852 * 325.03698 * 11 10 8
13 13 C 1.54264 * 110.03342 * 86.44983 * 11 10 8
14 14 C 1.54897 * 104.19493 * 142.89525 * 13 11 10
15 15 C 1.54889 * 102.74591 * 322.05796 * 14 13 11
16 16 C 1.53873 * 110.03188 * 203.62051 * 11 10 8
17 17 H 1.08999 * 110.03697 * 121.42937 * 16 11 10
18 18 C 1.52998 * 110.07252 * 0.02562 * 16 11 10
19 19 N 1.46502 * 109.47090 * 176.35596 * 18 16 11
20 20 C 1.36931 * 120.00039 * 180.02562 * 19 18 16
21 21 H 1.08009 * 120.00086 * 0.02562 * 20 19 18
22 22 C 1.38814 * 120.00263 * 180.02562 * 20 19 18
23 23 N 1.31621 * 119.99716 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00283 * 180.02562 * 22 20 19
25 25 H 1.48502 * 109.47527 * 59.99511 * 24 22 20
26 26 H 1.48499 * 109.47202 * 179.97438 * 24 22 20
27 27 H 1.48506 * 109.47000 * 299.99966 * 24 22 20
28 28 C 1.36319 * 119.59958 * 359.42704 * 7 6 5
29 29 N 1.36521 * 120.65466 * 0.27118 * 28 7 6
30 30 C 1.35269 * 125.99659 * 180.02562 * 2 1 3
31 31 H 1.08997 * 109.47758 * 90.02009 * 1 2 3
32 32 H 1.09002 * 109.46952 * 210.02391 * 1 2 3
33 33 H 1.09003 * 109.46960 * 330.02141 * 1 2 3
34 34 H 1.08001 * 126.44383 * 0.02562 * 3 2 1
35 35 H 1.08008 * 120.22376 * 359.97438 * 5 4 3
36 36 H 1.07998 * 120.51889 * 180.28926 * 6 5 4
37 37 H 0.96994 * 119.99839 * 359.97438 * 10 8 7
38 38 H 1.08998 * 110.49036 * 24.21981 * 13 11 10
39 39 H 1.09000 * 110.49063 * 261.57022 * 13 11 10
40 40 H 1.09000 * 110.75568 * 80.37108 * 14 13 11
41 41 H 1.09002 * 110.75327 * 203.73969 * 14 13 11
42 42 H 1.08998 * 110.48466 * 156.62292 * 15 14 13
43 43 H 1.09000 * 110.48547 * 279.12998 * 15 14 13
44 44 H 1.08999 * 109.47371 * 296.36109 * 18 16 11
45 45 H 1.09003 * 109.46634 * 56.35934 * 18 16 11
46 46 H 0.97004 * 119.99891 * 0.02562 * 19 18 16
47 47 H 0.96995 * 119.99690 * 179.97438 * 23 22 20
48 48 H 1.08002 * 119.67091 * 180.29255 * 28 7 6
49 49 H 1.07997 * 125.53157 * 0.03187 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3293 1.1320 0.0000
4 6 3.6382 0.6844 0.0006
5 6 4.8698 1.3783 0.0013
6 6 6.0308 0.6793 0.0089
7 6 5.9773 -0.7842 0.0029
8 6 7.2241 -1.5722 0.0041
9 8 7.1754 -2.7873 0.0042
10 7 8.4173 -0.9455 0.0052
11 6 9.6557 -1.7282 0.0058
12 1 9.5230 -2.6375 0.5922
13 6 10.0555 -2.0858 -1.4405
14 6 11.6015 -1.9893 -1.4421
15 6 11.8686 -0.7680 -0.5278
16 6 10.8084 -0.8903 0.5862
17 1 11.2352 -1.3928 1.4542
18 6 10.3012 0.4979 0.9819
19 7 11.3869 1.2533 1.6118
20 6 11.1665 2.5311 2.0517
21 1 10.1920 2.9820 1.9346
22 6 12.1953 3.2471 2.6481
23 7 13.3827 2.6974 2.7913
24 14 11.8944 4.9901 3.2488
25 1 10.8212 4.9817 4.2752
26 1 13.1430 5.5313 3.8432
27 1 11.4795 5.8428 2.1060
28 6 4.7682 -1.4138 0.0019
29 7 3.6084 -0.6937 0.0007
30 6 2.3020 -1.0944 -0.0005
31 1 -0.3634 -0.0004 -1.0276
32 1 -0.3633 -0.8898 0.5142
33 1 -0.3633 0.8902 0.5135
34 1 2.0035 2.1617 0.0004
35 1 4.8854 2.4583 0.0011
36 1 6.9805 1.1934 0.0142
37 1 8.4561 0.0237 0.0049
38 1 9.6279 -1.3701 -2.1426
39 1 9.7363 -3.0989 -1.6852
40 1 12.0453 -2.8915 -1.0211
41 1 11.9760 -1.8071 -2.4494
42 1 12.8725 -0.8193 -0.1063
43 1 11.7360 0.1605 -1.0831
44 1 9.9590 1.0268 0.0924
45 1 9.4742 0.3958 1.6846
46 1 12.2620 0.8482 1.7174
47 1 14.1017 3.1979 3.2078
48 1 4.7275 -2.4931 0.0023
49 1 1.9598 -2.1187 -0.0014
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732608755.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:22:25
Heat of formation + Delta-G solvation = 43.712720 kcal
Electronic energy + Delta-G solvation = -29077.790827 eV
Core-core repulsion = 25198.607103 eV
Total energy + Delta-G solvation = -3879.183724 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.35037 -40.18567 -38.18134 -36.42484 -34.41492 -33.92739 -33.22178 -31.67692
-31.45086 -28.66393 -28.40645 -27.84324 -26.83668 -24.62452 -23.48958 -22.77502
-22.45599 -21.26761 -20.50490 -19.88661 -19.07113 -18.14468 -17.43166 -16.87540
-16.35812 -16.10805 -15.72645 -15.16844 -14.98185 -14.81145 -14.60380 -14.52467
-14.19456 -13.76892 -13.58618 -13.37568 -13.35187 -13.17942 -13.04629 -12.94180
-12.39061 -12.21674 -11.87118 -11.71553 -11.67505 -11.34133 -11.12436 -10.88367
-10.87283 -10.82909 -10.59953 -10.52752 -10.42751 -10.34241 -10.07420 -9.99494
-9.72882 -9.04949 -8.89694 -8.55991 -7.60859 -6.98516 -5.81282 -3.10531
0.50308 0.96098 2.36271 2.44728 2.85280 3.24632 3.40625 3.45315
3.46248 3.49445 4.25223 4.41852 4.52961 4.58964 4.65055 4.72909
4.74588 4.79944 4.98883 5.02521 5.07995 5.28452 5.40916 5.42664
5.43113 5.49987 5.51814 5.61980 5.63858 5.67882 5.72857 5.77267
5.82999 5.83944 5.89766 6.03017 6.06640 6.13354 6.18372 6.20725
6.26427 6.40923 6.55107 6.55896 6.64101 6.67293 6.70642 6.77167
7.02471 7.50516 7.63041 8.15734 8.37113 9.48638 10.05412 10.40194
11.41297
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.009705 B = 0.002878 C = 0.002280
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2884.377209 B = 9725.731159 C =12276.245353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C -0.116 4.116
3 C -0.199 4.199
4 C 0.049 3.951
5 C -0.089 4.089
6 C -0.102 4.102
7 C -0.167 4.167
8 C 0.571 3.429
9 O -0.548 6.548
10 N -0.710 5.710
11 C 0.149 3.851
12 H 0.090 0.910
13 C -0.132 4.132
14 C -0.125 4.125
15 C -0.111 4.111
16 C -0.108 4.108
17 H 0.083 0.917
18 C 0.156 3.844
19 N -0.727 5.727
20 C -0.243 4.243
21 H 0.069 0.931
22 C -0.012 4.012
23 N -0.932 5.932
24 Si 0.907 3.093
25 H -0.286 1.286
26 H -0.291 1.291
27 H -0.286 1.286
28 C 0.129 3.871
29 N -0.355 5.355
30 C -0.053 4.053
31 H 0.066 0.934
32 H 0.063 0.937
33 H 0.066 0.934
34 H 0.146 0.854
35 H 0.148 0.852
36 H 0.141 0.859
37 H 0.408 0.592
38 H 0.068 0.932
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.065 0.935
42 H 0.070 0.930
43 H 0.072 0.928
44 H 0.016 0.984
45 H 0.021 0.979
46 H 0.385 0.615
47 H 0.256 0.744
48 H 0.174 0.826
49 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.486 -8.604 -9.310 23.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.120 4.120
3 C -0.223 4.223
4 C -0.055 4.055
5 C -0.108 4.108
6 C -0.123 4.123
7 C -0.173 4.173
8 C 0.358 3.642
9 O -0.428 6.428
10 N -0.363 5.363
11 C 0.044 3.956
12 H 0.109 0.891
13 C -0.170 4.170
14 C -0.163 4.163
15 C -0.149 4.149
16 C -0.127 4.127
17 H 0.102 0.898
18 C 0.028 3.972
19 N -0.372 5.372
20 C -0.374 4.374
21 H 0.087 0.913
22 C -0.208 4.208
23 N -0.580 5.580
24 Si 0.738 3.262
25 H -0.212 1.212
26 H -0.217 1.217
27 H -0.212 1.212
28 C 0.006 3.994
29 N -0.019 5.019
30 C -0.179 4.179
31 H 0.085 0.915
32 H 0.082 0.918
33 H 0.085 0.915
34 H 0.164 0.836
35 H 0.166 0.834
36 H 0.159 0.841
37 H 0.248 0.752
38 H 0.087 0.913
39 H 0.086 0.914
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.089 0.911
43 H 0.091 0.909
44 H 0.034 0.966
45 H 0.039 0.961
46 H 0.219 0.781
47 H 0.066 0.934
48 H 0.191 0.809
49 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -19.439 -9.496 -9.250 23.529
hybrid contribution 0.294 1.351 0.479 1.463
sum -19.144 -8.145 -8.771 22.578
Atomic orbital electron populations
1.20215 0.89394 1.02477 1.01966 1.19500 0.95878 0.92141 1.04481
1.21012 0.89534 0.98892 1.12907 1.18971 0.95669 0.81781 1.09100
1.20525 0.89076 1.00465 1.00695 1.22060 0.99083 0.91375 0.99752
1.20288 0.92694 0.93964 1.10324 1.17677 0.83245 0.86963 0.76342
1.90772 1.87521 1.13375 1.51129 1.46269 1.05040 1.11316 1.73687
1.21701 0.82498 0.94685 0.96682 0.89149 1.22768 0.96300 1.01640
0.96320 1.22495 0.94976 0.98841 0.99944 1.22355 0.98853 0.97929
0.95780 1.22223 0.94641 0.97066 0.98802 0.89838 1.20684 0.92396
0.89161 0.94917 1.42300 1.09852 1.13846 1.71168 1.19150 0.96255
0.90154 1.31873 0.91293 1.24741 0.95789 0.98583 1.01676 1.69646
1.01745 1.37232 1.49359 0.86278 0.76799 0.84561 0.78592 1.21242
1.21670 1.21229 1.21682 0.83132 0.98160 0.96434 1.41430 1.05380
1.07100 1.48018 1.21702 0.79698 1.00024 1.16470 0.91506 0.91811
0.91475 0.83624 0.83391 0.84118 0.75220 0.91302 0.91418 0.91516
0.91590 0.91129 0.90949 0.96624 0.96135 0.78094 0.93406 0.80885
0.81348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.54 10.36 36.01 0.37 -0.17 16
2 C -0.12 -1.11 6.10 -105.05 -0.64 -1.75 16
3 C -0.20 -2.09 10.91 -38.92 -0.42 -2.52 16
4 C 0.05 0.57 6.71 -83.94 -0.56 0.01 16
5 C -0.09 -0.96 10.09 -39.37 -0.40 -1.36 16
6 C -0.10 -1.16 9.73 -37.25 -0.36 -1.53 16
7 C -0.17 -2.08 5.98 -103.51 -0.62 -2.70 16
8 C 0.57 8.04 7.76 -12.49 -0.10 7.94 16
9 O -0.55 -8.99 15.96 5.27 0.08 -8.91 16
10 N -0.71 -9.55 4.41 -53.77 -0.24 -9.78 16
11 C 0.15 2.05 3.20 -66.82 -0.21 1.84 16
12 H 0.09 1.31 7.61 -51.93 -0.40 0.92 16
13 C -0.13 -1.62 6.53 -25.07 -0.16 -1.79 16
14 C -0.12 -1.48 6.91 -24.73 -0.17 -1.65 16
15 C -0.11 -1.62 6.01 -25.07 -0.15 -1.77 16
16 C -0.11 -1.67 2.98 -89.50 -0.27 -1.93 16
17 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
18 C 0.16 2.90 4.18 -4.04 -0.02 2.89 16
19 N -0.73 -17.53 5.43 -59.91 -0.33 -17.86 16
20 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16
21 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16
22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16
23 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16
24 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16
25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
28 C 0.13 1.50 10.45 -16.16 -0.17 1.33 16
29 N -0.35 -4.08 2.93 -60.50 -0.18 -4.26 16
30 C -0.05 -0.52 11.49 -16.46 -0.19 -0.71 16
31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16
35 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16
36 H 0.14 1.44 6.58 -52.49 -0.35 1.10 16
37 H 0.41 5.26 3.92 -40.82 -0.16 5.10 16
38 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
43 H 0.07 1.14 7.79 -51.93 -0.40 0.74 16
44 H 0.02 0.29 7.08 -51.93 -0.37 -0.08 16
45 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16
46 H 0.39 9.84 7.51 -40.82 -0.31 9.54 16
47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
48 H 0.17 1.79 7.56 -52.49 -0.40 1.39 16
49 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16
LS Contribution 396.57 15.07 5.98 5.98
Total: -1.00 -32.17 396.57 -10.68 -42.85
By element:
Atomic # 1 Polarization: 20.31 SS G_CDS: -7.38 Total: 12.93 kcal
Atomic # 6 Polarization: -6.67 SS G_CDS: -4.32 Total: -10.99 kcal
Atomic # 7 Polarization: -58.74 SS G_CDS: -0.02 Total: -58.76 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -32.17 -10.68 -42.85 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732608755.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.560 kcal
(2) G-P(sol) polarization free energy of solvation -32.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.388 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds