Wall clock time and date at job start Sat Apr 11 2020 06:24:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.36904 * 125.05496 * 2 1
4 4 H 0.96996 * 125.01533 * 359.95544 * 3 2 1
5 5 C 1.37122 * 109.97078 * 179.71932 * 3 2 1
6 6 C 1.40635 * 107.25305 * 0.44266 * 5 3 2
7 7 C 1.39542 * 120.04999 * 179.77363 * 6 5 3
8 8 C 1.37905 * 119.99012 * 359.70803 * 7 6 5
9 9 C 1.38325 * 120.58870 * 359.97423 * 8 7 6
10 10 C 1.39345 * 120.49901 * 0.04215 * 9 8 7
11 11 C 1.47509 * 120.21052 * 179.97438 * 10 9 8
12 12 O 1.21593 * 119.99979 * 187.01418 * 11 10 9
13 13 N 1.34773 * 119.99395 * 7.01562 * 11 10 9
14 14 C 1.47750 * 125.81705 * 174.18357 * 13 11 10
15 15 C 1.54912 * 104.84126 * 155.82828 * 14 13 11
16 16 H 1.08993 * 111.04060 * 279.00662 * 15 14 13
17 17 N 1.46501 * 111.00313 * 155.16405 * 15 14 13
18 18 C 1.36935 * 119.99625 * 92.80840 * 17 15 14
19 19 H 1.08004 * 120.00236 * 359.97438 * 18 17 15
20 20 C 1.38816 * 120.00088 * 179.97438 * 18 17 15
21 21 N 1.31623 * 119.99756 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00157 * 179.97438 * 20 18 17
23 23 H 1.48492 * 109.47102 * 60.00092 * 22 20 18
24 24 H 1.48499 * 109.47167 * 180.02562 * 22 20 18
25 25 H 1.48507 * 109.47002 * 299.99922 * 22 20 18
26 26 C 1.55158 * 101.58023 * 37.09636 * 15 14 13
27 27 H 1.08996 * 110.72369 * 82.86193 * 26 15 14
28 28 C 1.53005 * 110.86955 * 206.06478 * 26 15 14
29 29 C 1.47016 * 125.65637 * 354.27365 * 13 11 10
30 30 C 1.34211 * 125.06295 * 179.97438 * 2 1 3
31 31 C 1.50701 * 126.54913 * 0.02562 * 30 2 1
32 32 H 1.09007 * 109.47394 * 270.00003 * 1 2 3
33 33 H 1.08999 * 109.47742 * 30.00499 * 1 2 3
34 34 H 1.09006 * 109.46731 * 150.00841 * 1 2 3
35 35 H 1.07997 * 120.00855 * 179.72370 * 7 6 5
36 36 H 1.07996 * 119.71041 * 179.97438 * 8 7 6
37 37 H 1.07997 * 119.75357 * 180.02562 * 9 8 7
38 38 H 1.08993 * 110.29287 * 37.02534 * 14 13 11
39 39 H 1.09003 * 110.52595 * 274.75230 * 14 13 11
40 40 H 0.96996 * 120.00534 * 272.80780 * 17 15 14
41 41 H 0.96996 * 119.99674 * 179.97438 * 21 20 18
42 42 H 1.08999 * 109.46962 * 175.05796 * 28 26 15
43 43 H 1.08997 * 109.46757 * 295.05967 * 28 26 15
44 44 H 1.08998 * 109.47048 * 55.06279 * 28 26 15
45 45 H 1.09006 * 109.88337 * 61.60647 * 29 13 11
46 46 H 1.09002 * 109.88044 * 300.60187 * 29 13 11
47 47 H 1.08997 * 109.47078 * 269.99395 * 31 30 2
48 48 H 1.08996 * 109.47339 * 29.99720 * 31 30 2
49 49 H 1.09008 * 109.46957 * 149.99538 * 31 30 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2933 1.1207 0.0000
4 1 1.9627 2.0326 -0.0006
5 6 3.6173 0.7639 0.0063
6 6 3.6706 -0.6415 0.0001
7 6 4.9040 -1.2940 -0.0003
8 6 6.0719 -0.5605 -0.0006
9 6 6.0346 0.8222 -0.0012
10 6 4.8154 1.4969 -0.0005
11 6 4.7831 2.9716 -0.0005
12 8 3.7250 3.5566 0.1287
13 7 5.9266 3.6705 -0.1437
14 6 6.0314 5.1377 -0.2830
15 6 7.4618 5.4811 0.2027
16 1 7.5051 5.5273 1.2907
17 7 7.9315 6.7347 -0.3924
18 6 7.7467 7.9187 0.2704
19 1 7.2543 7.9283 1.2316
20 6 8.1922 9.1065 -0.2931
21 7 8.7927 9.0947 -1.4643
22 14 7.9394 10.7217 0.6107
23 1 8.6294 10.6669 1.9244
24 1 8.5001 11.8341 -0.1975
25 1 6.4872 10.9479 0.8232
26 6 8.2721 4.2723 -0.3354
27 1 8.5405 4.4226 -1.3811
28 6 9.5224 4.0330 0.5133
29 6 7.2803 3.0990 -0.1894
30 6 2.2780 -1.0985 0.0005
31 6 1.8026 -2.5286 0.0006
32 1 -0.3634 0.0000 1.0277
33 1 -0.3634 0.8899 -0.5139
34 1 -0.3633 -0.8901 -0.5137
35 1 4.9441 -2.3732 -0.0005
36 1 7.0240 -1.0702 -0.0005
37 1 6.9575 1.3832 -0.0019
38 1 5.2892 5.6310 0.3444
39 1 5.9033 5.4329 -1.3245
40 1 8.3734 6.7262 -1.2558
41 1 9.1037 9.9247 -1.8582
42 1 10.0265 3.1292 0.1709
43 1 10.1962 4.8841 0.4155
44 1 9.2352 3.9151 1.5582
45 1 7.3710 2.4285 -1.0441
46 1 7.4839 2.5539 0.7323
47 1 1.6878 -2.8732 1.0283
48 1 0.8437 -2.5928 -0.5135
49 1 2.5328 -3.1542 -0.5130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054805827.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:20
Heat of formation + Delta-G solvation = 47.242905 kcal
Electronic energy + Delta-G solvation = -29469.386238 eV
Core-core repulsion = 25590.355594 eV
Total energy + Delta-G solvation = -3879.030644 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.63073 -39.90206 -37.57867 -37.04281 -34.24953 -33.31854 -32.46444 -31.45273
-30.75920 -30.30992 -28.07950 -27.58570 -26.59709 -25.81331 -24.27261 -22.89348
-22.08684 -21.09826 -20.25453 -19.83193 -18.92519 -17.50611 -17.28512 -16.95144
-16.15519 -15.78702 -15.24782 -15.21182 -14.97980 -14.56647 -14.11198 -14.06941
-13.68127 -13.38376 -13.35669 -13.17605 -13.07220 -13.00927 -12.83571 -12.74405
-12.66165 -12.48193 -12.23136 -11.96109 -11.62864 -11.60022 -11.51612 -11.25853
-11.08362 -10.97890 -10.71663 -10.51936 -10.28596 -9.96742 -9.75231 -9.68321
-9.60822 -9.01946 -8.46980 -8.21813 -7.70576 -7.09717 -5.85777 -3.16395
0.63925 1.52733 2.31747 3.02632 3.06630 3.17247 3.40649 3.45414
3.46205 3.88479 4.40208 4.49277 4.52827 4.70213 4.79207 4.86092
4.95103 5.00480 5.04411 5.06705 5.18859 5.21976 5.26870 5.40592
5.46412 5.51603 5.53027 5.59162 5.59389 5.64053 5.75336 5.77786
5.82343 5.84753 5.93694 5.98836 6.14912 6.21998 6.22902 6.37740
6.40147 6.44926 6.53044 6.56361 6.60914 6.69563 6.86106 7.03102
7.46303 7.63416 7.74734 8.29388 8.32428 9.43772 9.96484 10.31623
11.36036
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.019146 B = 0.002467 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.105852 B =11347.251823 C =12561.760301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.093 4.093
2 C 0.074 3.926
3 N -0.575 5.575
4 H 0.426 0.574
5 C 0.153 3.847
6 C -0.116 4.116
7 C -0.047 4.047
8 C -0.160 4.160
9 C -0.099 4.099
10 C -0.143 4.143
11 C 0.572 3.428
12 O -0.560 6.560
13 N -0.605 5.605
14 C 0.080 3.920
15 C 0.178 3.822
16 H 0.069 0.931
17 N -0.708 5.708
18 C -0.248 4.248
19 H 0.072 0.928
20 C -0.008 4.008
21 N -0.930 5.930
22 Si 0.909 3.091
23 H -0.285 1.285
24 H -0.290 1.290
25 H -0.285 1.285
26 C -0.117 4.117
27 H 0.086 0.914
28 C -0.135 4.135
29 C 0.096 3.904
30 C -0.176 4.176
31 C -0.073 4.073
32 H 0.077 0.923
33 H 0.069 0.931
34 H 0.084 0.916
35 H 0.123 0.877
36 H 0.128 0.872
37 H 0.166 0.834
38 H 0.072 0.928
39 H 0.068 0.932
40 H 0.387 0.613
41 H 0.257 0.743
42 H 0.050 0.950
43 H 0.069 0.931
44 H 0.053 0.947
45 H 0.075 0.925
46 H 0.077 0.923
47 H 0.061 0.939
48 H 0.061 0.939
49 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.909 -25.082 2.337 26.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.034 4.034
3 N -0.178 5.178
4 H 0.266 0.734
5 C 0.042 3.958
6 C -0.120 4.120
7 C -0.066 4.066
8 C -0.179 4.179
9 C -0.118 4.118
10 C -0.148 4.148
11 C 0.363 3.637
12 O -0.441 6.441
13 N -0.337 5.337
14 C -0.044 4.044
15 C 0.065 3.935
16 H 0.087 0.913
17 N -0.348 5.348
18 C -0.379 4.379
19 H 0.090 0.910
20 C -0.204 4.204
21 N -0.577 5.577
22 Si 0.739 3.261
23 H -0.211 1.211
24 H -0.216 1.216
25 H -0.211 1.211
26 C -0.137 4.137
27 H 0.105 0.895
28 C -0.192 4.192
29 C -0.027 4.027
30 C -0.183 4.183
31 C -0.130 4.130
32 H 0.096 0.904
33 H 0.088 0.912
34 H 0.103 0.897
35 H 0.141 0.859
36 H 0.146 0.854
37 H 0.182 0.818
38 H 0.091 0.909
39 H 0.087 0.913
40 H 0.221 0.779
41 H 0.067 0.933
42 H 0.069 0.931
43 H 0.088 0.912
44 H 0.072 0.928
45 H 0.092 0.908
46 H 0.095 0.905
47 H 0.080 0.920
48 H 0.080 0.920
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -9.633 -24.469 2.506 26.416
hybrid contribution -0.133 1.431 0.069 1.438
sum -9.766 -23.039 2.575 25.155
Atomic orbital electron populations
1.20472 0.87750 1.03665 1.03157 1.20193 0.93440 0.85588 1.04199
1.41858 1.03884 1.09067 1.63004 0.73446 1.17892 0.84088 0.93177
1.00642 1.19025 0.93398 0.91406 1.08195 1.20669 0.90434 0.99459
0.96039 1.20840 0.97990 0.93621 1.05441 1.22590 0.98133 0.95346
0.95728 1.18923 0.91564 0.92072 1.12283 1.17877 0.82835 0.86332
0.76674 1.90671 1.29791 1.71490 1.52148 1.48384 1.05292 1.09288
1.70687 1.23539 1.02023 0.77036 1.01849 1.21379 0.89165 0.86063
0.96902 0.91322 1.42268 1.68771 1.00670 1.23053 1.19207 1.32486
0.84641 1.01571 0.91039 1.24762 1.00786 0.97882 0.97015 1.69648
1.44217 1.26731 1.17122 0.86253 0.77815 0.83309 0.78716 1.21125
1.21633 1.21145 1.22598 0.94858 0.94816 1.01469 0.89547 1.21670
0.96899 1.01675 0.98984 1.22607 0.82284 0.96799 1.00969 1.19980
0.90313 0.94754 1.13276 1.20072 1.00582 0.90874 1.01483 0.90417
0.91238 0.89719 0.85900 0.85423 0.81788 0.90914 0.91327 0.77851
0.93292 0.93110 0.91246 0.92799 0.90758 0.90487 0.91997 0.91986
0.91949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.66 10.18 36.01 0.37 -0.29 16
2 C 0.07 0.81 7.08 -81.75 -0.58 0.23 16
3 N -0.58 -7.71 5.88 -6.76 -0.04 -7.75 16
4 H 0.43 5.79 7.57 -40.82 -0.31 5.48 16
5 C 0.15 2.24 6.87 -83.76 -0.58 1.66 16
6 C -0.12 -1.47 6.35 -105.15 -0.67 -2.14 16
7 C -0.05 -0.50 10.09 -39.22 -0.40 -0.90 16
8 C -0.16 -1.62 10.00 -39.67 -0.40 -2.02 16
9 C -0.10 -1.18 8.61 -39.14 -0.34 -1.52 16
10 C -0.14 -2.12 5.88 -104.87 -0.62 -2.73 16
11 C 0.57 9.93 7.80 -12.48 -0.10 9.83 16
12 O -0.56 -11.17 15.45 5.28 0.08 -11.09 16
13 N -0.60 -9.91 3.34 -176.62 -0.59 -10.50 16
14 C 0.08 1.53 6.65 -2.35 -0.02 1.51 16
15 C 0.18 3.36 3.17 -65.78 -0.21 3.15 16
16 H 0.07 1.34 7.99 -51.93 -0.42 0.92 16
17 N -0.71 -16.78 5.24 -51.35 -0.27 -17.05 16
18 C -0.25 -6.65 9.96 -15.06 -0.15 -6.80 16
19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16
20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16
21 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16
22 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16
23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
26 C -0.12 -1.72 3.19 -88.78 -0.28 -2.00 16
27 H 0.09 1.31 8.00 -51.93 -0.42 0.89 16
28 C -0.13 -1.74 9.14 37.16 0.34 -1.40 16
29 C 0.10 1.24 4.46 -3.07 -0.01 1.23 16
30 C -0.18 -1.94 6.32 -102.69 -0.65 -2.59 16
31 C -0.07 -0.55 10.17 36.01 0.37 -0.18 16
32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.08 0.46 7.05 -51.93 -0.37 0.09 16
35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16
37 H 0.17 1.68 2.70 -59.12 -0.16 1.53 16
38 H 0.07 1.51 7.99 -51.93 -0.42 1.09 16
39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16
40 H 0.39 9.70 7.76 -40.82 -0.32 9.39 16
41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
44 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16
45 H 0.07 0.83 6.74 -51.93 -0.35 0.48 16
46 H 0.08 0.86 6.42 -51.93 -0.33 0.52 16
47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
48 H 0.06 0.37 7.06 -51.93 -0.37 0.00 16
49 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16
LS Contribution 391.93 15.07 5.91 5.91
Total: -1.00 -32.43 391.93 -10.44 -42.87
By element:
Atomic # 1 Polarization: 19.58 SS G_CDS: -7.22 Total: 12.36 kcal
Atomic # 6 Polarization: -1.27 SS G_CDS: -4.01 Total: -5.28 kcal
Atomic # 7 Polarization: -61.62 SS G_CDS: -0.17 Total: -61.80 kcal
Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -32.43 -10.44 -42.87 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054805827.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.114 kcal
(2) G-P(sol) polarization free energy of solvation -32.433 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.243 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds