Wall clock time and date at job start Sat Apr 11 2020 06:24:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.36904 * 125.05496 * 2 1
4 4 H 0.96996 * 125.01533 * 359.95544 * 3 2 1
5 5 C 1.37122 * 109.97078 * 179.71932 * 3 2 1
6 6 C 1.40635 * 107.25305 * 0.44266 * 5 3 2
7 7 C 1.39542 * 120.04999 * 179.77363 * 6 5 3
8 8 C 1.37905 * 119.99012 * 359.70803 * 7 6 5
9 9 C 1.38325 * 120.58870 * 359.97423 * 8 7 6
10 10 C 1.39345 * 120.49901 * 0.04215 * 9 8 7
11 11 C 1.47509 * 120.21052 * 179.97438 * 10 9 8
12 12 O 1.21593 * 119.99979 * 187.01418 * 11 10 9
13 13 N 1.34773 * 119.99395 * 7.01562 * 11 10 9
14 14 C 1.47750 * 125.81705 * 174.18357 * 13 11 10
15 15 C 1.54912 * 104.84126 * 155.82828 * 14 13 11
16 16 H 1.08993 * 111.04060 * 279.00662 * 15 14 13
17 17 N 1.46501 * 111.00313 * 155.16405 * 15 14 13
18 18 C 1.36935 * 119.99625 * 92.80840 * 17 15 14
19 19 H 1.08004 * 120.00236 * 359.97438 * 18 17 15
20 20 C 1.38816 * 120.00088 * 179.97438 * 18 17 15
21 21 N 1.31623 * 119.99756 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00157 * 179.97438 * 20 18 17
23 23 H 1.48492 * 109.47102 * 60.00092 * 22 20 18
24 24 H 1.48499 * 109.47167 * 180.02562 * 22 20 18
25 25 H 1.48507 * 109.47002 * 299.99922 * 22 20 18
26 26 C 1.55158 * 101.58023 * 37.09636 * 15 14 13
27 27 H 1.08996 * 110.72369 * 82.86193 * 26 15 14
28 28 C 1.53005 * 110.86955 * 206.06478 * 26 15 14
29 29 C 1.47016 * 125.65637 * 354.27365 * 13 11 10
30 30 C 1.34211 * 125.06295 * 179.97438 * 2 1 3
31 31 C 1.50701 * 126.54913 * 0.02562 * 30 2 1
32 32 H 1.09007 * 109.47394 * 270.00003 * 1 2 3
33 33 H 1.08999 * 109.47742 * 30.00499 * 1 2 3
34 34 H 1.09006 * 109.46731 * 150.00841 * 1 2 3
35 35 H 1.07997 * 120.00855 * 179.72370 * 7 6 5
36 36 H 1.07996 * 119.71041 * 179.97438 * 8 7 6
37 37 H 1.07997 * 119.75357 * 180.02562 * 9 8 7
38 38 H 1.08993 * 110.29287 * 37.02534 * 14 13 11
39 39 H 1.09003 * 110.52595 * 274.75230 * 14 13 11
40 40 H 0.96996 * 120.00534 * 272.80780 * 17 15 14
41 41 H 0.96996 * 119.99674 * 179.97438 * 21 20 18
42 42 H 1.08999 * 109.46962 * 175.05796 * 28 26 15
43 43 H 1.08997 * 109.46757 * 295.05967 * 28 26 15
44 44 H 1.08998 * 109.47048 * 55.06279 * 28 26 15
45 45 H 1.09006 * 109.88337 * 61.60647 * 29 13 11
46 46 H 1.09002 * 109.88044 * 300.60187 * 29 13 11
47 47 H 1.08997 * 109.47078 * 269.99395 * 31 30 2
48 48 H 1.08996 * 109.47339 * 29.99720 * 31 30 2
49 49 H 1.09008 * 109.46957 * 149.99538 * 31 30 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2933 1.1207 0.0000
4 1 1.9627 2.0326 -0.0006
5 6 3.6173 0.7639 0.0063
6 6 3.6706 -0.6415 0.0001
7 6 4.9040 -1.2940 -0.0003
8 6 6.0719 -0.5605 -0.0006
9 6 6.0346 0.8222 -0.0012
10 6 4.8154 1.4969 -0.0005
11 6 4.7831 2.9716 -0.0005
12 8 3.7250 3.5566 0.1287
13 7 5.9266 3.6705 -0.1437
14 6 6.0314 5.1377 -0.2830
15 6 7.4618 5.4811 0.2027
16 1 7.5051 5.5273 1.2907
17 7 7.9315 6.7347 -0.3924
18 6 7.7467 7.9187 0.2704
19 1 7.2543 7.9283 1.2316
20 6 8.1922 9.1065 -0.2931
21 7 8.7927 9.0947 -1.4643
22 14 7.9394 10.7217 0.6107
23 1 8.6294 10.6669 1.9244
24 1 8.5001 11.8341 -0.1975
25 1 6.4872 10.9479 0.8232
26 6 8.2721 4.2723 -0.3354
27 1 8.5405 4.4226 -1.3811
28 6 9.5224 4.0330 0.5133
29 6 7.2803 3.0990 -0.1894
30 6 2.2780 -1.0985 0.0005
31 6 1.8026 -2.5286 0.0006
32 1 -0.3634 0.0000 1.0277
33 1 -0.3634 0.8899 -0.5139
34 1 -0.3633 -0.8901 -0.5137
35 1 4.9441 -2.3732 -0.0005
36 1 7.0240 -1.0702 -0.0005
37 1 6.9575 1.3832 -0.0019
38 1 5.2892 5.6310 0.3444
39 1 5.9033 5.4329 -1.3245
40 1 8.3734 6.7262 -1.2558
41 1 9.1037 9.9247 -1.8582
42 1 10.0265 3.1292 0.1709
43 1 10.1962 4.8841 0.4155
44 1 9.2352 3.9151 1.5582
45 1 7.3710 2.4285 -1.0441
46 1 7.4839 2.5539 0.7323
47 1 1.6878 -2.8732 1.0283
48 1 0.8437 -2.5928 -0.5135
49 1 2.5328 -3.1542 -0.5130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054805827.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:19
Heat of formation + Delta-G solvation = 27.573191 kcal
Electronic energy + Delta-G solvation = -29470.239180 eV
Core-core repulsion = 25590.355594 eV
Total energy + Delta-G solvation = -3879.883587 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.53940 -41.15559 -38.95923 -37.97103 -36.01570 -34.15170 -33.92381 -32.63898
-32.05910 -31.30845 -29.18036 -28.77157 -27.63300 -26.62720 -26.05937 -24.20814
-23.08479 -22.30170 -21.47152 -21.08594 -19.87751 -19.25021 -18.34398 -18.12287
-17.54684 -16.94162 -16.45328 -16.26700 -16.02037 -15.88304 -15.49414 -15.42504
-14.96172 -14.68643 -14.50827 -14.34312 -14.06961 -14.00580 -13.74323 -13.69479
-13.57747 -13.30178 -13.18295 -13.04233 -12.91796 -12.87793 -12.75002 -12.45398
-12.36304 -12.27174 -12.14886 -12.07397 -11.91046 -11.65681 -11.30530 -11.03596
-10.87555 -10.51210 -9.81516 -9.14814 -9.07784 -8.55259 -7.99141 -5.28791
-0.29826 0.64586 1.41361 1.45388 1.47636 1.53507 1.84040 1.96539
2.19332 2.53079 2.93151 3.29405 3.43276 3.47691 3.67722 3.81050
3.89588 4.02065 4.06300 4.14004 4.24587 4.26868 4.31986 4.39563
4.42832 4.47210 4.53386 4.59791 4.68190 4.71870 4.83603 4.85111
4.88384 4.96178 4.99136 5.03940 5.06930 5.11746 5.18119 5.18870
5.26634 5.34823 5.41954 5.48259 5.52762 5.56574 5.77839 5.90704
6.17647 6.22217 6.40643 6.58946 6.98469 7.29791 8.00616 8.25615
9.23103
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.019146 B = 0.002467 C = 0.002228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.105852 B =11347.251823 C =12561.760301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.057 3.943
3 N -0.589 5.589
4 H 0.417 0.583
5 C 0.120 3.880
6 C -0.134 4.134
7 C -0.040 4.040
8 C -0.156 4.156
9 C -0.092 4.092
10 C -0.173 4.173
11 C 0.564 3.436
12 O -0.601 6.601
13 N -0.605 5.605
14 C 0.091 3.909
15 C 0.173 3.827
16 H 0.064 0.936
17 N -0.718 5.718
18 C -0.247 4.247
19 H 0.072 0.928
20 C -0.067 4.067
21 N -0.963 5.963
22 Si 0.969 3.031
23 H -0.275 1.275
24 H -0.294 1.294
25 H -0.284 1.284
26 C -0.106 4.106
27 H 0.082 0.918
28 C -0.129 4.129
29 C 0.097 3.903
30 C -0.182 4.182
31 C -0.070 4.070
32 H 0.087 0.913
33 H 0.068 0.932
34 H 0.106 0.894
35 H 0.155 0.845
36 H 0.167 0.833
37 H 0.182 0.818
38 H 0.044 0.956
39 H 0.049 0.951
40 H 0.378 0.622
41 H 0.253 0.747
42 H 0.088 0.912
43 H 0.043 0.957
44 H 0.061 0.939
45 H 0.104 0.896
46 H 0.106 0.894
47 H 0.071 0.929
48 H 0.077 0.923
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.239 -28.909 3.031 30.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.050 4.050
3 N -0.192 5.192
4 H 0.255 0.745
5 C 0.009 3.991
6 C -0.139 4.139
7 C -0.058 4.058
8 C -0.175 4.175
9 C -0.110 4.110
10 C -0.179 4.179
11 C 0.357 3.643
12 O -0.485 6.485
13 N -0.336 5.336
14 C -0.035 4.035
15 C 0.062 3.938
16 H 0.082 0.918
17 N -0.356 5.356
18 C -0.379 4.379
19 H 0.090 0.910
20 C -0.260 4.260
21 N -0.613 5.613
22 Si 0.798 3.202
23 H -0.201 1.201
24 H -0.220 1.220
25 H -0.210 1.210
26 C -0.126 4.126
27 H 0.101 0.899
28 C -0.187 4.187
29 C -0.024 4.024
30 C -0.189 4.189
31 C -0.127 4.127
32 H 0.106 0.894
33 H 0.087 0.913
34 H 0.124 0.876
35 H 0.173 0.827
36 H 0.185 0.815
37 H 0.198 0.802
38 H 0.062 0.938
39 H 0.067 0.933
40 H 0.211 0.789
41 H 0.061 0.939
42 H 0.107 0.893
43 H 0.063 0.937
44 H 0.080 0.920
45 H 0.121 0.879
46 H 0.124 0.876
47 H 0.089 0.911
48 H 0.096 0.904
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -8.961 -28.369 3.229 29.925
hybrid contribution -0.402 2.490 -0.131 2.526
sum -9.363 -25.879 3.099 27.695
Atomic orbital electron populations
1.20583 0.85362 1.04704 1.04084 1.20866 0.95075 0.84985 1.04045
1.42056 1.04235 1.09336 1.63549 0.74456 1.18299 0.84439 0.94483
1.01895 1.19476 0.95118 0.90703 1.08626 1.21145 0.89682 1.01188
0.93806 1.21278 0.99550 0.92773 1.03906 1.22829 0.97354 0.96447
0.94377 1.18871 0.93227 0.90113 1.15722 1.18476 0.82267 0.87719
0.75833 1.90633 1.31269 1.72538 1.54043 1.48377 1.06771 1.07878
1.70622 1.23108 1.01213 0.79251 0.99926 1.21516 0.89722 0.86113
0.96439 0.91844 1.42350 1.68966 1.01577 1.22725 1.19530 1.31018
0.85929 1.01440 0.91018 1.25498 1.01559 1.00922 0.98003 1.69786
1.45905 1.26990 1.18589 0.85290 0.77555 0.79539 0.77836 1.20106
1.21960 1.21045 1.22514 0.95624 0.93041 1.01372 0.89926 1.21644
0.95459 1.02373 0.99188 1.22881 0.79505 0.96295 1.03692 1.20472
0.89646 0.96356 1.12393 1.20161 1.01557 0.88585 1.02429 0.89446
0.91260 0.87567 0.82701 0.81537 0.80209 0.93779 0.93262 0.78889
0.93855 0.89323 0.93738 0.92018 0.87877 0.87602 0.91080 0.90396
0.91012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.19 10.18 71.24 0.73 -0.46 16
2 C 0.06 1.23 7.08 40.85 0.29 1.52 16
3 N -0.59 -16.46 5.88 -175.29 -1.03 -17.49 16
4 H 0.42 12.39 7.57 -92.71 -0.70 11.69 16
5 C 0.12 3.52 6.87 39.44 0.27 3.79 16
6 C -0.13 -3.20 6.35 -20.21 -0.13 -3.33 16
7 C -0.04 -0.70 10.09 22.51 0.23 -0.47 16
8 C -0.16 -2.50 10.00 22.21 0.22 -2.28 16
9 C -0.09 -1.92 8.61 22.56 0.19 -1.73 16
10 C -0.17 -5.09 5.88 -20.03 -0.12 -5.21 16
11 C 0.56 20.22 7.80 86.69 0.68 20.90 16
12 O -0.60 -25.63 15.45 -4.01 -0.06 -25.70 16
13 N -0.61 -20.03 3.34 -830.98 -2.77 -22.80 16
14 C 0.09 3.63 6.65 86.79 0.58 4.21 16
15 C 0.17 6.68 3.17 46.38 0.15 6.83 16
16 H 0.06 2.52 7.99 -2.39 -0.02 2.50 16
17 N -0.72 -35.07 5.24 -316.37 -1.66 -36.73 16
18 C -0.25 -13.59 9.96 84.03 0.84 -12.76 16
19 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16
20 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16
21 N -0.96 -57.85 13.06 21.65 0.28 -57.57 16
22 Si 0.97 46.17 29.55 68.60 2.03 48.19 16
23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16
25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16
26 C -0.11 -2.96 3.19 -9.60 -0.03 -2.99 16
27 H 0.08 2.42 8.00 -2.39 -0.02 2.40 16
28 C -0.13 -3.02 9.14 71.98 0.66 -2.36 16
29 C 0.10 2.29 4.46 86.73 0.39 2.67 16
30 C -0.18 -3.71 6.32 -18.61 -0.12 -3.83 16
31 C -0.07 -0.84 10.17 71.24 0.72 -0.12 16
32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16
33 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16
34 H 0.11 0.91 7.05 -2.38 -0.02 0.89 16
35 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16
36 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16
37 H 0.18 2.97 2.70 -9.14 -0.02 2.94 16
38 H 0.04 1.97 7.99 -2.39 -0.02 1.95 16
39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
40 H 0.38 19.63 7.76 -92.71 -0.72 18.92 16
41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
44 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16
45 H 0.10 1.92 6.74 -2.38 -0.02 1.90 16
46 H 0.11 1.94 6.42 -2.39 -0.02 1.93 16
47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
48 H 0.08 0.68 7.06 -2.39 -0.02 0.66 16
49 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16
Total: -1.00 -75.18 391.93 2.35 -72.83
By element:
Atomic # 1 Polarization: 38.65 SS G_CDS: -0.44 Total: 38.21 kcal
Atomic # 6 Polarization: -4.95 SS G_CDS: 6.01 Total: 1.06 kcal
Atomic # 7 Polarization: -129.41 SS G_CDS: -5.18 Total: -134.59 kcal
Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.70 kcal
Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal
Total: -75.18 2.35 -72.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054805827.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.401 kcal
(2) G-P(sol) polarization free energy of solvation -75.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds