Wall clock time and date at job start Sat Apr 11 2020 06:24:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35742 * 120.33336 * 2 1
4 4 C 1.40823 * 119.71787 * 180.02562 * 3 2 1
5 5 C 1.34537 * 120.58897 * 359.97438 * 4 3 2
6 6 N 1.37434 * 120.74042 * 359.97438 * 5 4 3
7 7 C 1.35134 * 131.28888 * 180.33837 * 6 5 4
8 8 C 1.38057 * 108.77007 * 180.14450 * 7 6 5
9 9 C 1.47500 * 126.37228 * 179.83005 * 8 7 6
10 10 O 1.21592 * 119.99927 * 179.69052 * 9 8 7
11 11 N 1.34776 * 120.00100 * 359.68378 * 9 8 7
12 12 C 1.46498 * 120.00096 * 180.02562 * 11 9 8
13 13 H 1.08997 * 109.52561 * 34.91980 * 12 11 9
14 14 C 1.53037 * 109.49664 * 155.00179 * 12 11 9
15 15 C 1.53041 * 109.53612 * 181.31298 * 14 12 11
16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12
17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14
18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14
19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14
20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15
21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16
22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16
23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19
24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19
25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20
26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20
27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20
28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15
29 29 C 1.41201 * 107.25409 * 359.56265 * 8 7 6
30 30 C 1.37953 * 119.80869 * 0.02562 * 6 5 4
31 31 H 1.09003 * 109.47685 * 270.00952 * 1 2 3
32 32 H 1.09005 * 109.47302 * 30.01551 * 1 2 3
33 33 H 1.09001 * 109.47122 * 150.01660 * 1 2 3
34 34 H 1.07996 * 120.13649 * 0.02562 * 3 2 1
35 35 H 1.08010 * 119.70688 * 179.97438 * 4 3 2
36 36 H 1.07998 * 119.63110 * 179.97438 * 5 4 3
37 37 H 1.08002 * 125.60998 * 359.96742 * 7 6 5
38 38 H 0.97004 * 119.99477 * 0.02562 * 11 9 8
39 39 H 1.09001 * 109.46406 * 61.29570 * 14 12 11
40 40 H 1.09001 * 109.45933 * 301.33182 * 14 12 11
41 41 H 1.09010 * 109.49639 * 178.68188 * 15 14 12
42 42 H 1.08997 * 109.49680 * 58.58637 * 15 14 12
43 43 H 1.09003 * 109.46928 * 60.28838 * 18 16 15
44 44 H 1.08996 * 109.46860 * 180.28361 * 18 16 15
45 45 H 1.08996 * 109.46920 * 300.28384 * 18 16 15
46 46 H 0.97005 * 119.99905 * 180.02562 * 23 22 20
47 47 H 1.09006 * 109.58907 * 293.81968 * 28 19 16
48 48 H 1.09004 * 109.70724 * 173.46839 * 28 19 16
49 49 H 1.08005 * 126.56391 * 180.22456 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1925 1.1716 0.0000
4 6 3.6006 1.1565 -0.0005
5 6 4.2728 -0.0090 -0.0006
6 7 3.6005 -1.2077 0.0005
7 6 4.0499 -2.4821 0.0067
8 6 2.9649 -3.3357 0.0015
9 6 3.0118 -4.8100 0.0020
10 8 1.9787 -5.4511 0.0027
11 7 4.1999 -5.4464 0.0015
12 6 4.2465 -6.9107 0.0014
13 1 3.4160 -7.3015 -0.5863
14 6 5.5693 -7.3795 -0.6088
15 6 5.6051 -8.9092 -0.6393
16 6 5.5156 -9.4468 0.7924
17 1 6.4041 -9.1506 1.3501
18 6 5.4144 -10.9732 0.7617
19 7 4.3203 -8.8839 1.4350
20 6 3.3901 -9.7029 2.0174
21 1 3.2350 -10.7011 1.6355
22 6 2.6468 -9.2502 3.0988
23 7 3.0290 -8.1762 3.7567
24 14 1.1038 -10.1650 3.6200
25 1 1.4556 -11.5606 3.9858
26 1 0.4965 -9.4839 4.7916
27 1 0.1325 -10.1774 2.4970
28 6 4.1417 -7.4256 1.4404
29 6 1.8019 -2.5350 0.0020
30 6 2.2210 -1.2202 0.0010
31 1 -0.3634 0.0002 1.0276
32 1 -0.3634 0.8899 -0.5141
33 1 -0.3633 -0.8901 -0.5136
34 1 1.6602 2.1113 0.0004
35 1 4.1459 2.0888 -0.0010
36 1 5.3527 -0.0025 -0.0014
37 1 5.0871 -2.7831 0.0118
38 1 5.0241 -4.9349 0.0012
39 1 6.3987 -7.0089 -0.0064
40 1 5.6576 -6.9939 -1.6244
41 1 6.5375 -9.2423 -1.0954
42 1 4.7618 -9.2813 -1.2210
43 1 6.2999 -11.3864 0.2787
44 1 5.3458 -11.3533 1.7809
45 1 4.5255 -11.2672 0.2036
46 1 2.5098 -7.8600 4.5126
47 1 4.9180 -6.9645 2.0510
48 1 3.1613 -7.1769 1.8469
49 1 0.7800 -2.8846 0.0021
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071987918.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:46
Heat of formation + Delta-G solvation = 53.760648 kcal
Electronic energy + Delta-G solvation = -29597.727103 eV
Core-core repulsion = 25718.979090 eV
Total energy + Delta-G solvation = -3878.748013 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.31977 -39.23597 -37.56705 -36.65529 -34.35947 -34.17444 -32.74058 -31.09296
-30.15061 -29.74545 -28.51587 -27.09160 -26.01181 -24.97971 -23.48255 -22.19837
-22.09492 -21.57939 -20.40036 -19.63466 -19.06096 -17.82531 -16.90831 -16.37505
-16.10563 -15.64767 -15.39113 -15.29649 -14.83408 -14.34633 -14.07234 -13.86766
-13.72758 -13.60299 -13.45081 -13.30320 -13.22519 -12.92655 -12.64652 -12.38372
-12.16843 -11.92934 -11.73757 -11.69112 -11.42106 -11.25670 -11.06205 -10.82913
-10.63136 -10.45411 -10.34850 -10.25477 -10.20658 -9.90932 -9.70967 -9.37833
-9.33079 -8.64215 -8.37842 -8.32777 -7.46770 -6.53014 -5.66690 -3.11545
0.59476 1.21229 2.23579 2.53898 3.29303 3.47557 3.54249 3.56512
3.66555 3.92595 4.26659 4.48540 4.58297 4.60683 4.74544 4.84821
5.00763 5.26405 5.31398 5.38901 5.39600 5.42038 5.43843 5.56253
5.62990 5.69473 5.74783 5.76943 5.84215 5.94177 6.03552 6.16375
6.18914 6.25138 6.32671 6.38202 6.44744 6.51363 6.58026 6.65402
6.69156 6.74497 6.81979 7.04957 7.10293 7.12875 7.18578 7.40909
7.82772 7.93064 8.07388 8.57992 8.80227 9.32108 9.96457 10.52068
11.41391
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.014176 B = 0.002819 C = 0.002483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.725991 B = 9929.621741 C =11272.837867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.035 4.035
3 C -0.149 4.149
4 C -0.132 4.132
5 C 0.032 3.968
6 N -0.338 5.338
7 C -0.013 4.013
8 C -0.156 4.156
9 C 0.581 3.419
10 O -0.529 6.529
11 N -0.717 5.717
12 C 0.118 3.882
13 H 0.082 0.918
14 C -0.116 4.116
15 C -0.126 4.126
16 C 0.165 3.835
17 H 0.024 0.976
18 C -0.136 4.136
19 N -0.583 5.583
20 C -0.254 4.254
21 H 0.069 0.931
22 C 0.007 3.993
23 N -0.900 5.900
24 Si 0.900 3.100
25 H -0.284 1.284
26 H -0.291 1.291
27 H -0.283 1.283
28 C 0.169 3.831
29 C -0.131 4.131
30 C 0.023 3.977
31 H 0.078 0.922
32 H 0.071 0.929
33 H 0.074 0.926
34 H 0.131 0.869
35 H 0.143 0.857
36 H 0.160 0.840
37 H 0.175 0.825
38 H 0.389 0.611
39 H 0.058 0.942
40 H 0.050 0.950
41 H 0.054 0.946
42 H 0.061 0.939
43 H 0.037 0.963
44 H 0.061 0.939
45 H 0.053 0.947
46 H 0.253 0.747
47 H 0.016 0.984
48 H 0.093 0.907
49 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.575 18.938 -9.991 21.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.036 4.036
3 C -0.169 4.169
4 C -0.152 4.152
5 C -0.086 4.086
6 N -0.001 5.001
7 C -0.147 4.147
8 C -0.164 4.164
9 C 0.367 3.633
10 O -0.406 6.406
11 N -0.367 5.367
12 C 0.013 3.987
13 H 0.101 0.899
14 C -0.154 4.154
15 C -0.166 4.166
16 C 0.059 3.941
17 H 0.041 0.959
18 C -0.194 4.194
19 N -0.306 5.306
20 C -0.384 4.384
21 H 0.086 0.914
22 C -0.192 4.192
23 N -0.543 5.543
24 Si 0.730 3.270
25 H -0.210 1.210
26 H -0.217 1.217
27 H -0.209 1.209
28 C 0.042 3.958
29 C -0.156 4.156
30 C -0.081 4.081
31 H 0.096 0.904
32 H 0.090 0.910
33 H 0.093 0.907
34 H 0.149 0.851
35 H 0.161 0.839
36 H 0.177 0.823
37 H 0.193 0.807
38 H 0.222 0.778
39 H 0.076 0.924
40 H 0.069 0.931
41 H 0.072 0.928
42 H 0.079 0.921
43 H 0.056 0.944
44 H 0.080 0.920
45 H 0.072 0.928
46 H 0.063 0.937
47 H 0.034 0.966
48 H 0.111 0.889
49 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 3.951 18.661 -9.826 21.457
hybrid contribution -0.125 0.038 0.421 0.440
sum 3.826 18.698 -9.405 21.277
Atomic orbital electron populations
1.20752 0.89648 1.03426 1.03080 1.19382 0.96477 0.90131 0.97578
1.20766 0.93662 0.97782 1.04665 1.20656 0.94818 0.96970 1.02730
1.21618 0.98307 0.83254 1.05387 1.41236 1.07169 1.05282 1.46400
1.22115 0.99460 0.80522 1.12594 1.19837 0.93155 0.93175 1.10209
1.17353 0.84003 0.85412 0.76577 1.90814 1.33176 1.67194 1.49367
1.45918 1.07319 1.08154 1.75290 1.21973 0.97625 0.77218 1.01918
0.89947 1.21677 0.97190 0.97171 0.99364 1.22051 1.00585 0.94206
0.99761 1.20478 0.90414 0.92581 0.90666 0.95851 1.21796 0.99649
0.95928 1.01986 1.44004 1.20156 1.01520 1.64959 1.19074 1.13113
0.97887 1.08301 0.91352 1.25081 1.00165 0.98153 0.95780 1.69994
1.38482 1.25454 1.20397 0.86408 0.83827 0.78957 0.77794 1.21004
1.21705 1.20888 1.21061 1.02434 0.83210 0.89062 1.21118 0.98966
0.88742 1.06726 1.18623 0.81796 0.94940 1.12763 0.90355 0.90966
0.90671 0.85093 0.83883 0.82270 0.80738 0.77802 0.92371 0.93118
0.92759 0.92057 0.94398 0.92021 0.92797 0.93707 0.96587 0.88869
0.82788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.91 9.91 36.00 0.36 -0.56 16
2 C -0.03 -0.36 5.90 -104.32 -0.62 -0.98 16
3 C -0.15 -1.26 9.72 -39.50 -0.38 -1.65 16
4 C -0.13 -1.00 9.97 -39.91 -0.40 -1.40 16
5 C 0.03 0.28 10.89 -16.35 -0.18 0.10 16
6 N -0.34 -4.00 2.92 -60.42 -0.18 -4.18 16
7 C -0.01 -0.17 11.09 -16.16 -0.18 -0.35 16
8 C -0.16 -2.48 6.12 -105.06 -0.64 -3.12 16
9 C 0.58 11.15 7.78 -12.49 -0.10 11.05 16
10 O -0.53 -12.64 16.58 5.28 0.09 -12.55 16
11 N -0.72 -12.28 5.07 -54.75 -0.28 -12.56 16
12 C 0.12 2.36 2.60 -67.81 -0.18 2.18 16
13 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16
14 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16
15 C -0.13 -2.18 5.37 -26.61 -0.14 -2.33 16
16 C 0.17 3.44 3.49 -67.60 -0.24 3.20 16
17 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
18 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16
19 N -0.58 -14.80 2.99 -164.77 -0.49 -15.29 16
20 C -0.25 -7.09 8.58 -15.06 -0.13 -7.22 16
21 H 0.07 1.85 6.24 -52.49 -0.33 1.53 16
22 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16
23 N -0.90 -27.21 11.23 55.49 0.62 -26.59 16
24 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16
25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16
27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16
28 C 0.17 4.20 4.86 -3.71 -0.02 4.18 16
29 C -0.13 -1.99 10.27 -38.55 -0.40 -2.39 16
30 C 0.02 0.30 6.60 -84.00 -0.55 -0.26 16
31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16
33 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16
34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16
35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16
36 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16
37 H 0.18 1.54 7.42 -52.49 -0.39 1.15 16
38 H 0.39 5.17 7.50 -40.82 -0.31 4.86 16
39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16
42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
44 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16
45 H 0.05 1.05 7.42 -51.93 -0.39 0.66 16
46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16
47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
48 H 0.09 2.74 6.15 -51.93 -0.32 2.42 16
49 H 0.15 2.30 7.93 -52.48 -0.42 1.88 16
LS Contribution 392.40 15.07 5.91 5.91
Total: -1.00 -35.44 392.40 -10.62 -46.06
By element:
Atomic # 1 Polarization: 12.66 SS G_CDS: -7.54 Total: 5.12 kcal
Atomic # 6 Polarization: -0.01 SS G_CDS: -3.72 Total: -3.74 kcal
Atomic # 7 Polarization: -58.29 SS G_CDS: -0.32 Total: -58.61 kcal
Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal
Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -35.44 -10.62 -46.06 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071987918.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.819 kcal
(2) G-P(sol) polarization free energy of solvation -35.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.761 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds