Wall clock time and date at job start Sat Apr 11 2020 06:24:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.35742 * 120.33336 * 2 1
4 4 C 1.40823 * 119.71787 * 180.02562 * 3 2 1
5 5 C 1.34537 * 120.58897 * 359.97438 * 4 3 2
6 6 N 1.37434 * 120.74042 * 359.97438 * 5 4 3
7 7 C 1.35134 * 131.28888 * 180.33837 * 6 5 4
8 8 C 1.38057 * 108.77007 * 180.14450 * 7 6 5
9 9 C 1.47500 * 126.37228 * 179.83005 * 8 7 6
10 10 O 1.21592 * 119.99927 * 179.69052 * 9 8 7
11 11 N 1.34776 * 120.00100 * 359.68378 * 9 8 7
12 12 C 1.46498 * 120.00096 * 180.02562 * 11 9 8
13 13 H 1.08997 * 109.52561 * 34.91980 * 12 11 9
14 14 C 1.53037 * 109.49664 * 155.00179 * 12 11 9
15 15 C 1.53041 * 109.53612 * 181.31298 * 14 12 11
16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12
17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14
18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14
19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14
20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15
21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16
22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16
23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19
24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19
25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20
26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20
27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20
28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15
29 29 C 1.41201 * 107.25409 * 359.56265 * 8 7 6
30 30 C 1.37953 * 119.80869 * 0.02562 * 6 5 4
31 31 H 1.09003 * 109.47685 * 270.00952 * 1 2 3
32 32 H 1.09005 * 109.47302 * 30.01551 * 1 2 3
33 33 H 1.09001 * 109.47122 * 150.01660 * 1 2 3
34 34 H 1.07996 * 120.13649 * 0.02562 * 3 2 1
35 35 H 1.08010 * 119.70688 * 179.97438 * 4 3 2
36 36 H 1.07998 * 119.63110 * 179.97438 * 5 4 3
37 37 H 1.08002 * 125.60998 * 359.96742 * 7 6 5
38 38 H 0.97004 * 119.99477 * 0.02562 * 11 9 8
39 39 H 1.09001 * 109.46406 * 61.29570 * 14 12 11
40 40 H 1.09001 * 109.45933 * 301.33182 * 14 12 11
41 41 H 1.09010 * 109.49639 * 178.68188 * 15 14 12
42 42 H 1.08997 * 109.49680 * 58.58637 * 15 14 12
43 43 H 1.09003 * 109.46928 * 60.28838 * 18 16 15
44 44 H 1.08996 * 109.46860 * 180.28361 * 18 16 15
45 45 H 1.08996 * 109.46920 * 300.28384 * 18 16 15
46 46 H 0.97005 * 119.99905 * 180.02562 * 23 22 20
47 47 H 1.09006 * 109.58907 * 293.81968 * 28 19 16
48 48 H 1.09004 * 109.70724 * 173.46839 * 28 19 16
49 49 H 1.08005 * 126.56391 * 180.22456 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1925 1.1716 0.0000
4 6 3.6006 1.1565 -0.0005
5 6 4.2728 -0.0090 -0.0006
6 7 3.6005 -1.2077 0.0005
7 6 4.0499 -2.4821 0.0067
8 6 2.9649 -3.3357 0.0015
9 6 3.0118 -4.8100 0.0020
10 8 1.9787 -5.4511 0.0027
11 7 4.1999 -5.4464 0.0015
12 6 4.2465 -6.9107 0.0014
13 1 3.4160 -7.3015 -0.5863
14 6 5.5693 -7.3795 -0.6088
15 6 5.6051 -8.9092 -0.6393
16 6 5.5156 -9.4468 0.7924
17 1 6.4041 -9.1506 1.3501
18 6 5.4144 -10.9732 0.7617
19 7 4.3203 -8.8839 1.4350
20 6 3.3901 -9.7029 2.0174
21 1 3.2350 -10.7011 1.6355
22 6 2.6468 -9.2502 3.0988
23 7 3.0290 -8.1762 3.7567
24 14 1.1038 -10.1650 3.6200
25 1 1.4556 -11.5606 3.9858
26 1 0.4965 -9.4839 4.7916
27 1 0.1325 -10.1774 2.4970
28 6 4.1417 -7.4256 1.4404
29 6 1.8019 -2.5350 0.0020
30 6 2.2210 -1.2202 0.0010
31 1 -0.3634 0.0002 1.0276
32 1 -0.3634 0.8899 -0.5141
33 1 -0.3633 -0.8901 -0.5136
34 1 1.6602 2.1113 0.0004
35 1 4.1459 2.0888 -0.0010
36 1 5.3527 -0.0025 -0.0014
37 1 5.0871 -2.7831 0.0118
38 1 5.0241 -4.9349 0.0012
39 1 6.3987 -7.0089 -0.0064
40 1 5.6576 -6.9939 -1.6244
41 1 6.5375 -9.2423 -1.0954
42 1 4.7618 -9.2813 -1.2210
43 1 6.2999 -11.3864 0.2787
44 1 5.3458 -11.3533 1.7809
45 1 4.5255 -11.2672 0.2036
46 1 2.5098 -7.8600 4.5126
47 1 4.9180 -6.9645 2.0510
48 1 3.1613 -7.1769 1.8469
49 1 0.7800 -2.8846 0.0021
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071987918.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:45
Heat of formation + Delta-G solvation = 31.662342 kcal
Electronic energy + Delta-G solvation = -29598.685358 eV
Core-core repulsion = 25718.979090 eV
Total energy + Delta-G solvation = -3879.706268 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.23259 -40.77749 -39.18115 -37.55593 -35.98841 -35.03900 -34.64504 -32.50906
-31.77168 -31.10659 -29.48474 -27.84167 -27.69774 -26.79625 -24.74026 -23.89512
-22.97031 -22.55699 -21.96380 -21.21061 -20.55694 -18.77431 -18.33795 -17.93167
-17.37629 -16.83897 -16.63978 -16.54308 -16.15197 -15.86523 -15.50781 -15.37974
-15.07379 -14.97219 -14.82291 -14.47068 -14.28826 -14.14949 -14.07405 -13.70278
-13.49063 -13.14913 -13.06303 -12.76310 -12.69695 -12.58344 -12.55957 -12.35456
-12.29346 -12.13790 -12.04638 -11.98116 -11.65498 -11.42410 -11.13991 -11.11446
-10.95731 -10.52800 -10.10705 -9.54338 -8.60721 -8.31721 -7.84829 -5.31211
-0.19659 0.36363 1.09503 1.39323 1.46086 1.49672 1.68627 2.24257
2.50427 2.51484 2.56934 3.31702 3.49709 3.66895 3.77066 3.85001
3.99364 4.02032 4.10313 4.11062 4.17128 4.27324 4.40153 4.42724
4.48086 4.63270 4.72600 4.73830 4.76015 4.81278 4.83405 4.90870
4.94248 5.02129 5.07958 5.12247 5.20038 5.23425 5.31377 5.33219
5.37584 5.46988 5.50392 5.56293 5.62406 5.63598 5.70998 5.81743
5.87955 6.30844 6.42076 6.68984 7.16328 7.36673 7.91073 8.40370
9.20049
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.014176 B = 0.002819 C = 0.002483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.725991 B = 9929.621741 C =11272.837867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.071 4.071
3 C -0.129 4.129
4 C -0.127 4.127
5 C 0.020 3.980
6 N -0.338 5.338
7 C 0.003 3.997
8 C -0.193 4.193
9 C 0.577 3.423
10 O -0.593 6.593
11 N -0.701 5.701
12 C 0.132 3.868
13 H 0.048 0.952
14 C -0.106 4.106
15 C -0.118 4.118
16 C 0.153 3.847
17 H 0.023 0.977
18 C -0.129 4.129
19 N -0.603 5.603
20 C -0.252 4.252
21 H 0.074 0.926
22 C -0.054 4.054
23 N -0.933 5.933
24 Si 0.956 3.044
25 H -0.266 1.266
26 H -0.297 1.297
27 H -0.287 1.287
28 C 0.182 3.818
29 C -0.176 4.176
30 C 0.024 3.976
31 H 0.077 0.923
32 H 0.097 0.903
33 H 0.058 0.942
34 H 0.162 0.838
35 H 0.186 0.814
36 H 0.199 0.801
37 H 0.214 0.786
38 H 0.412 0.588
39 H 0.076 0.924
40 H 0.086 0.914
41 H 0.098 0.902
42 H 0.050 0.950
43 H 0.080 0.920
44 H 0.037 0.963
45 H 0.044 0.956
46 H 0.244 0.756
47 H -0.001 1.001
48 H 0.037 0.963
49 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.865 21.559 -11.848 25.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.072 4.072
3 C -0.149 4.149
4 C -0.146 4.146
5 C -0.096 4.096
6 N -0.001 5.001
7 C -0.131 4.131
8 C -0.200 4.200
9 C 0.366 3.634
10 O -0.474 6.474
11 N -0.352 5.352
12 C 0.026 3.974
13 H 0.066 0.934
14 C -0.144 4.144
15 C -0.158 4.158
16 C 0.048 3.952
17 H 0.041 0.959
18 C -0.187 4.187
19 N -0.327 5.327
20 C -0.382 4.382
21 H 0.092 0.908
22 C -0.249 4.249
23 N -0.580 5.580
24 Si 0.785 3.215
25 H -0.191 1.191
26 H -0.223 1.223
27 H -0.214 1.214
28 C 0.054 3.946
29 C -0.200 4.200
30 C -0.081 4.081
31 H 0.096 0.904
32 H 0.115 0.885
33 H 0.077 0.923
34 H 0.180 0.820
35 H 0.203 0.797
36 H 0.216 0.784
37 H 0.231 0.769
38 H 0.249 0.751
39 H 0.095 0.905
40 H 0.104 0.896
41 H 0.116 0.884
42 H 0.069 0.931
43 H 0.099 0.901
44 H 0.056 0.944
45 H 0.064 0.936
46 H 0.053 0.947
47 H 0.017 0.983
48 H 0.055 0.945
49 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 7.312 21.291 -11.712 25.376
hybrid contribution -1.083 -0.573 0.969 1.563
sum 6.228 20.718 -10.743 24.154
Atomic orbital electron populations
1.20763 0.88830 1.03876 1.03226 1.19668 0.97467 0.89936 1.00105
1.21298 0.94588 0.98062 1.00916 1.21262 0.94559 0.98304 1.00464
1.22450 1.00271 0.82080 1.04838 1.41479 1.06823 1.06226 1.45581
1.22430 0.99883 0.80236 1.10534 1.19567 0.95111 0.91363 1.13990
1.17947 0.83485 0.86951 0.75061 1.90764 1.35366 1.68877 1.52421
1.45672 1.07923 1.07171 1.74397 1.21526 0.99086 0.78653 0.98176
0.93387 1.21647 0.94736 0.96755 1.01253 1.21963 1.02388 0.94515
0.96895 1.20817 0.88191 0.93775 0.92420 0.95895 1.21731 1.01305
0.94745 1.00882 1.44304 1.21698 1.01488 1.65226 1.19434 1.13185
0.98188 1.07412 0.90815 1.25822 1.03101 0.99384 0.96628 1.70159
1.39502 1.27277 1.21012 0.85500 0.80514 0.78661 0.76840 1.19075
1.22330 1.21376 1.20727 0.98575 0.83613 0.91637 1.21056 0.98343
0.90458 1.10133 1.18825 0.82969 0.94828 1.11517 0.90393 0.88454
0.92274 0.81999 0.79714 0.78431 0.76945 0.75125 0.90522 0.89556
0.88375 0.93088 0.90140 0.94376 0.93647 0.94745 0.98294 0.94477
0.84866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.80 9.91 71.23 0.71 -1.10 16
2 C -0.07 -1.41 5.90 -19.67 -0.12 -1.53 16
3 C -0.13 -1.71 9.72 22.32 0.22 -1.49 16
4 C -0.13 -1.29 9.97 22.05 0.22 -1.07 16
5 C 0.02 0.26 10.89 82.97 0.90 1.17 16
6 N -0.34 -7.40 2.92 -345.07 -1.01 -8.41 16
7 C 0.00 0.07 11.09 84.14 0.93 1.00 16
8 C -0.19 -6.50 6.12 -20.15 -0.12 -6.62 16
9 C 0.58 23.89 7.78 86.69 0.67 24.56 16
10 O -0.59 -31.45 16.58 -4.01 -0.07 -31.52 16
11 N -0.70 -24.63 5.07 -445.38 -2.26 -26.89 16
12 C 0.13 5.42 2.60 45.07 0.12 5.54 16
13 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16
14 C -0.11 -3.21 5.35 30.62 0.16 -3.04 16
15 C -0.12 -3.76 5.37 30.67 0.16 -3.60 16
16 C 0.15 6.22 3.49 44.98 0.16 6.38 16
17 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
18 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16
19 N -0.60 -31.57 2.99 -675.22 -2.02 -33.59 16
20 C -0.25 -14.58 8.58 84.03 0.72 -13.86 16
21 H 0.07 4.10 6.24 -2.91 -0.02 4.08 16
22 C -0.05 -3.29 4.94 84.86 0.42 -2.87 16
23 N -0.93 -60.00 11.23 21.65 0.24 -59.75 16
24 Si 0.96 49.22 29.58 68.60 2.03 51.24 16
25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16
26 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16
27 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16
28 C 0.18 9.51 4.86 86.36 0.42 9.93 16
29 C -0.18 -5.90 10.27 22.94 0.24 -5.67 16
30 C 0.02 0.64 6.60 38.90 0.26 0.89 16
31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
32 H 0.10 1.04 8.09 -2.38 -0.02 1.02 16
33 H 0.06 1.13 7.70 -2.39 -0.02 1.11 16
34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16
35 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16
36 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16
37 H 0.21 3.07 7.42 -2.91 -0.02 3.05 16
38 H 0.41 10.44 7.50 -92.71 -0.70 9.74 16
39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16
40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
41 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16
42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16
43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
44 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16
45 H 0.04 1.72 7.42 -2.39 -0.02 1.70 16
46 H 0.24 15.43 8.31 -92.70 -0.77 14.66 16
47 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16
48 H 0.04 2.35 6.15 -2.38 -0.01 2.34 16
49 H 0.13 4.74 7.93 -2.91 -0.02 4.72 16
Total: -1.00 -87.94 392.40 3.83 -84.11
By element:
Atomic # 1 Polarization: 20.09 SS G_CDS: 0.26 Total: 20.35 kcal
Atomic # 6 Polarization: -2.18 SS G_CDS: 6.64 Total: 4.46 kcal
Atomic # 7 Polarization: -123.61 SS G_CDS: -5.04 Total: -128.65 kcal
Atomic # 8 Polarization: -31.45 SS G_CDS: -0.07 Total: -31.52 kcal
Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.24 kcal
Total: -87.94 3.83 -84.11 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071987918.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.773 kcal
(2) G-P(sol) polarization free energy of solvation -87.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.835 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds