Wall clock time and date at job start Sat Apr 11 2020 06:24:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50703 * 109.47011 * 2 1
4 4 C 1.38253 * 120.00216 * 264.97632 * 3 2 1
5 5 C 1.38220 * 120.00110 * 179.97438 * 4 3 2
6 6 C 1.38245 * 120.00129 * 359.96033 * 5 4 3
7 7 C 1.38215 * 119.99804 * 359.85280 * 6 5 4
8 8 C 1.38208 * 120.00209 * 85.00112 * 3 2 1
9 9 C 1.50707 * 119.99895 * 359.97438 * 8 3 2
10 10 H 1.09005 * 109.46630 * 325.00156 * 9 8 3
11 11 C 1.53006 * 109.47194 * 84.99758 * 9 8 3
12 12 N 1.46497 * 109.47212 * 175.00173 * 11 9 8
13 13 C 1.34777 * 119.99935 * 180.02562 * 12 11 9
14 14 O 1.21269 * 119.99905 * 359.97438 * 13 12 11
15 15 C 1.50702 * 119.99578 * 179.97438 * 13 12 11
16 16 C 1.50704 * 109.46762 * 179.97438 * 15 13 12
17 17 C 1.34845 * 125.88833 * 85.00052 * 16 15 13
18 18 C 1.40883 * 107.41891 * 180.02562 * 17 16 15
19 19 C 1.34854 * 107.41814 * 0.02562 * 18 17 16
20 20 N 1.36343 * 108.21624 * 0.26031 * 19 18 17
21 21 H 0.96994 * 125.63652 * 179.73195 * 20 19 18
22 22 N 1.46496 * 109.47198 * 205.00236 * 9 8 3
23 23 C 1.36931 * 120.00299 * 85.00063 * 22 9 8
24 24 H 1.08007 * 119.99658 * 359.97438 * 23 22 9
25 25 C 1.38811 * 120.00009 * 180.02562 * 23 22 9
26 26 N 1.31614 * 120.00298 * 359.97438 * 25 23 22
27 27 Si 1.86805 * 119.99933 * 179.97438 * 25 23 22
28 28 H 1.48507 * 109.47154 * 359.97438 * 27 25 23
29 29 H 1.48500 * 109.47064 * 119.99551 * 27 25 23
30 30 H 1.48497 * 109.47372 * 239.99725 * 27 25 23
31 31 H 1.08998 * 109.46851 * 300.00231 * 1 2 3
32 32 H 1.09001 * 109.46989 * 59.99560 * 1 2 3
33 33 H 1.08997 * 109.46693 * 179.97438 * 1 2 3
34 34 H 1.08998 * 109.47363 * 240.00567 * 2 1 3
35 35 H 1.08994 * 109.47629 * 119.99877 * 2 1 3
36 36 H 1.08005 * 120.00152 * 359.97438 * 4 3 2
37 37 H 1.08001 * 119.99611 * 179.97438 * 5 4 3
38 38 H 1.07993 * 120.00247 * 180.02562 * 6 5 4
39 39 H 1.08005 * 120.00083 * 180.21300 * 7 6 5
40 40 H 1.09005 * 109.46419 * 54.99961 * 11 9 8
41 41 H 1.09002 * 109.46995 * 295.00149 * 11 9 8
42 42 H 0.97004 * 119.99681 * 0.02562 * 12 11 9
43 43 H 1.09007 * 109.46806 * 60.00106 * 15 13 12
44 44 H 1.08998 * 109.47448 * 300.00182 * 15 13 12
45 45 H 1.08010 * 126.29114 * 0.04613 * 17 16 15
46 46 H 1.08008 * 126.29481 * 179.97438 * 18 17 16
47 47 H 1.08002 * 125.89007 * 179.97438 * 19 18 17
48 48 H 0.97008 * 119.99720 * 264.99520 * 22 9 8
49 49 H 0.97001 * 120.00211 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3616 2.0377 -1.1927
5 6 2.8218 3.3410 -1.1927
6 6 2.9521 4.0281 -0.0002
7 6 2.6192 3.4128 1.1918
8 6 2.1643 2.1072 1.1923
9 6 1.8054 1.4349 2.4925
10 1 0.9567 0.7692 2.3351
11 6 3.0023 0.6251 2.9954
12 7 2.6957 0.0692 4.3157
13 6 3.6097 -0.6847 4.9582
14 8 4.6856 -0.9032 4.4432
15 6 3.2945 -1.2560 6.3166
16 6 4.4733 -2.0537 6.8119
17 6 5.5459 -1.5584 7.4618
18 6 6.4058 -2.6388 7.7410
19 6 5.8262 -3.7533 7.2506
20 7 4.6426 -3.3995 6.6736
21 1 4.0222 -4.0054 6.2392
22 7 1.4511 2.4512 3.4863
23 6 0.1736 2.9415 3.5388
24 1 -0.5727 2.5791 2.8472
25 6 -0.1619 3.9049 4.4801
26 7 0.7476 4.3468 5.3226
27 14 -1.9045 4.5742 4.5513
28 1 -2.7293 3.9196 3.5041
29 1 -2.4878 4.2949 5.8880
30 1 -1.8815 6.0405 4.3178
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3632 -1.0277 -0.0005
34 1 1.8934 -0.5137 -0.8900
35 1 1.8934 -0.5138 0.8899
36 1 2.2592 1.5012 -2.1244
37 1 3.0794 3.8227 -2.1244
38 1 3.3112 5.0466 -0.0002
39 1 2.7177 3.9507 2.1232
40 1 3.8751 1.2740 3.0680
41 1 3.2101 -0.1869 2.2986
42 1 1.8349 0.2437 4.7274
43 1 2.4216 -1.9050 6.2441
44 1 3.0864 -0.4438 7.0131
45 1 5.7147 -0.5235 7.7210
46 1 7.3553 -2.5845 8.2530
47 1 6.2319 -4.7529 7.3015
48 1 2.1215 2.7768 4.1072
49 1 0.5132 5.0203 5.9801
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001325367273.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:46
Heat of formation + Delta-G solvation = 36.479414 kcal
Electronic energy + Delta-G solvation = -29486.360808 eV
Core-core repulsion = 25606.863424 eV
Total energy + Delta-G solvation = -3879.497384 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.07010 -39.59072 -38.86996 -35.91022 -33.88767 -33.56455 -32.12335 -31.54532
-30.83167 -29.57700 -29.01563 -27.81011 -26.10359 -23.92369 -23.38553 -22.78169
-20.76236 -20.51648 -20.32145 -20.00223 -19.64986 -17.67723 -17.31222 -16.78260
-15.98412 -15.71568 -15.44775 -15.05587 -14.62696 -14.29731 -14.07992 -13.76748
-13.46437 -13.44241 -13.39137 -13.27880 -13.12454 -12.95007 -12.80589 -12.61734
-12.38306 -12.18520 -12.06869 -11.78342 -11.56090 -11.42943 -11.10849 -10.99325
-10.88629 -10.79152 -10.45981 -10.31330 -10.12483 -9.80279 -9.61589 -9.10343
-8.74146 -8.65052 -8.25150 -8.08703 -7.93462 -7.15956 -5.89758 -3.21254
1.83833 1.95109 2.28995 2.93529 3.08970 3.34818 3.35734 3.42529
3.43771 3.71501 4.27762 4.47522 4.79881 5.07199 5.10827 5.15065
5.22786 5.24854 5.31046 5.42847 5.46436 5.50081 5.51793 5.58511
5.60385 5.64473 5.70793 5.82058 5.84763 5.88194 5.97937 6.05437
6.05733 6.21507 6.31156 6.34665 6.39903 6.42642 6.50210 6.59816
6.69917 6.81868 6.96836 7.08061 7.10066 7.21433 7.32029 7.56840
7.62060 7.63594 7.91483 8.26546 8.56834 9.39748 9.89866 10.26743
11.31523
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.008494 B = 0.003444 C = 0.002770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3295.770023 B = 8127.877909 C =10107.327294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.084 4.084
3 C -0.085 4.085
4 C -0.130 4.130
5 C -0.131 4.131
6 C -0.134 4.134
7 C -0.077 4.077
8 C -0.084 4.084
9 C 0.197 3.803
10 H 0.070 0.930
11 C 0.121 3.879
12 N -0.714 5.714
13 C 0.509 3.491
14 O -0.541 6.541
15 C -0.074 4.074
16 C 0.039 3.961
17 C -0.182 4.182
18 C -0.201 4.201
19 C -0.018 4.018
20 N -0.554 5.554
21 H 0.410 0.590
22 N -0.715 5.715
23 C -0.242 4.242
24 H 0.071 0.929
25 C -0.004 4.004
26 N -0.927 5.927
27 Si 0.903 3.097
28 H -0.280 1.280
29 H -0.291 1.291
30 H -0.292 1.292
31 H 0.064 0.936
32 H 0.052 0.948
33 H 0.052 0.948
34 H 0.063 0.937
35 H 0.071 0.929
36 H 0.111 0.889
37 H 0.110 0.890
38 H 0.113 0.887
39 H 0.132 0.868
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.410 0.590
43 H 0.096 0.904
44 H 0.117 0.883
45 H 0.133 0.867
46 H 0.132 0.868
47 H 0.160 0.840
48 H 0.387 0.613
49 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.301 -13.042 -3.300 14.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.122 4.122
3 C -0.086 4.086
4 C -0.148 4.148
5 C -0.149 4.149
6 C -0.152 4.152
7 C -0.095 4.095
8 C -0.087 4.087
9 C 0.086 3.914
10 H 0.088 0.912
11 C -0.003 4.003
12 N -0.366 5.366
13 C 0.294 3.706
14 O -0.418 6.418
15 C -0.115 4.115
16 C -0.074 4.074
17 C -0.206 4.206
18 C -0.226 4.226
19 C -0.149 4.149
20 N -0.149 5.149
21 H 0.245 0.755
22 N -0.356 5.356
23 C -0.373 4.373
24 H 0.089 0.911
25 C -0.201 4.201
26 N -0.574 5.574
27 Si 0.734 3.266
28 H -0.206 1.206
29 H -0.218 1.218
30 H -0.219 1.219
31 H 0.083 0.917
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.082 0.918
35 H 0.090 0.910
36 H 0.129 0.871
37 H 0.128 0.872
38 H 0.131 0.869
39 H 0.150 0.850
40 H 0.083 0.917
41 H 0.083 0.917
42 H 0.247 0.753
43 H 0.114 0.886
44 H 0.135 0.865
45 H 0.151 0.849
46 H 0.150 0.850
47 H 0.178 0.822
48 H 0.222 0.778
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 4.777 -13.240 -3.728 14.561
hybrid contribution -1.412 0.677 0.080 1.568
sum 3.365 -12.563 -3.649 13.508
Atomic orbital electron populations
1.21759 0.94913 1.01141 1.02662 1.20543 0.96165 0.93214 1.02232
1.19718 0.99977 0.95955 0.92950 1.20836 1.01692 0.95326 0.96958
1.20963 1.01368 0.94960 0.97586 1.21119 1.01551 0.99608 0.92901
1.21156 0.95547 0.94509 0.98312 1.20827 0.97377 0.94977 0.95558
1.19505 0.94337 0.90639 0.86907 0.91243 1.21565 0.98465 0.96839
0.83475 1.45961 1.19239 1.51525 1.19918 1.20450 0.84390 0.78910
0.86815 1.90705 1.23527 1.59694 1.67875 1.20148 0.95701 1.00097
0.95534 1.19565 0.99021 0.83159 1.05630 1.20650 0.94913 0.99074
1.05981 1.20849 1.01317 0.92439 1.07967 1.21716 0.88730 0.99747
1.04745 1.41860 1.18857 1.07634 1.46522 0.75452 1.42461 1.10764
1.45517 1.36875 1.19198 0.87115 1.17421 1.13539 0.91135 1.24699
0.97566 0.99426 0.98423 1.69658 1.32519 1.33201 1.22068 0.86193
0.84418 0.78752 0.77239 1.20572 1.21847 1.21872 0.91722 0.92901
0.92932 0.91798 0.91018 0.87142 0.87152 0.86930 0.85036 0.91703
0.91709 0.75319 0.88612 0.86453 0.84941 0.85006 0.82247 0.77836
0.93410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.89 9.72 37.16 0.36 -1.53 16
2 C -0.08 -1.11 5.38 -27.88 -0.15 -1.26 16
3 C -0.09 -1.34 5.13 -104.63 -0.54 -1.88 16
4 C -0.13 -1.92 9.68 -39.58 -0.38 -2.30 16
5 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16
6 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16
7 C -0.08 -1.45 9.32 -39.58 -0.37 -1.82 16
8 C -0.08 -1.49 5.03 -104.62 -0.53 -2.02 16
9 C 0.20 3.50 1.97 -69.08 -0.14 3.37 16
10 H 0.07 1.23 5.56 -51.93 -0.29 0.94 16
11 C 0.12 2.01 5.08 -4.04 -0.02 1.99 16
12 N -0.71 -10.99 5.39 -60.29 -0.32 -11.31 16
13 C 0.51 7.92 7.82 -10.98 -0.09 7.84 16
14 O -0.54 -10.42 16.03 5.57 0.09 -10.33 16
15 C -0.07 -0.90 6.24 -29.03 -0.18 -1.08 16
16 C 0.04 0.52 5.66 -81.79 -0.46 0.06 16
17 C -0.18 -2.59 10.76 -39.79 -0.43 -3.01 16
18 C -0.20 -2.55 10.86 -39.78 -0.43 -2.98 16
19 C -0.02 -0.20 11.94 -16.75 -0.20 -0.40 16
20 N -0.55 -6.19 6.08 -9.12 -0.06 -6.25 16
21 H 0.41 3.40 8.96 -40.82 -0.37 3.04 16
22 N -0.72 -15.44 3.29 -54.54 -0.18 -15.62 16
23 C -0.24 -5.96 9.92 -15.06 -0.15 -6.11 16
24 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16
25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16
26 N -0.93 -25.62 13.06 55.49 0.72 -24.90 16
27 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16
28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
29 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
31 H 0.06 0.95 6.80 -51.93 -0.35 0.60 16
32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16
35 H 0.07 0.94 5.58 -51.93 -0.29 0.65 16
36 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16
37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16
38 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16
39 H 0.13 2.75 7.26 -52.48 -0.38 2.37 16
40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
41 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16
42 H 0.41 6.20 8.14 -40.82 -0.33 5.87 16
43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
44 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16
45 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16
46 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16
47 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16
48 H 0.39 9.13 7.80 -40.82 -0.32 8.81 16
49 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
LS Contribution 404.89 15.07 6.10 6.10
Total: -1.00 -30.98 404.89 -10.55 -41.53
By element:
Atomic # 1 Polarization: 28.32 SS G_CDS: -7.29 Total: 21.03 kcal
Atomic # 6 Polarization: -11.71 SS G_CDS: -4.59 Total: -16.30 kcal
Atomic # 7 Polarization: -58.25 SS G_CDS: 0.17 Total: -58.08 kcal
Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -30.98 -10.55 -41.53 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325367273.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.014 kcal
(2) G-P(sol) polarization free energy of solvation -30.983 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.031 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds