Wall clock time and date at job start Sat Apr 11 2020 06:24:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50703 * 109.47011 * 2 1
4 4 C 1.38253 * 120.00216 * 264.97632 * 3 2 1
5 5 C 1.38220 * 120.00110 * 179.97438 * 4 3 2
6 6 C 1.38245 * 120.00129 * 359.96033 * 5 4 3
7 7 C 1.38215 * 119.99804 * 359.85280 * 6 5 4
8 8 C 1.38208 * 120.00209 * 85.00112 * 3 2 1
9 9 C 1.50707 * 119.99895 * 359.97438 * 8 3 2
10 10 H 1.09005 * 109.46630 * 325.00156 * 9 8 3
11 11 C 1.53006 * 109.47194 * 84.99758 * 9 8 3
12 12 N 1.46497 * 109.47212 * 175.00173 * 11 9 8
13 13 C 1.34777 * 119.99935 * 180.02562 * 12 11 9
14 14 O 1.21269 * 119.99905 * 359.97438 * 13 12 11
15 15 C 1.50702 * 119.99578 * 179.97438 * 13 12 11
16 16 C 1.50704 * 109.46762 * 179.97438 * 15 13 12
17 17 C 1.34845 * 125.88833 * 85.00052 * 16 15 13
18 18 C 1.40883 * 107.41891 * 180.02562 * 17 16 15
19 19 C 1.34854 * 107.41814 * 0.02562 * 18 17 16
20 20 N 1.36343 * 108.21624 * 0.26031 * 19 18 17
21 21 H 0.96994 * 125.63652 * 179.73195 * 20 19 18
22 22 N 1.46496 * 109.47198 * 205.00236 * 9 8 3
23 23 C 1.36931 * 120.00299 * 85.00063 * 22 9 8
24 24 H 1.08007 * 119.99658 * 359.97438 * 23 22 9
25 25 C 1.38811 * 120.00009 * 180.02562 * 23 22 9
26 26 N 1.31614 * 120.00298 * 359.97438 * 25 23 22
27 27 Si 1.86805 * 119.99933 * 179.97438 * 25 23 22
28 28 H 1.48507 * 109.47154 * 359.97438 * 27 25 23
29 29 H 1.48500 * 109.47064 * 119.99551 * 27 25 23
30 30 H 1.48497 * 109.47372 * 239.99725 * 27 25 23
31 31 H 1.08998 * 109.46851 * 300.00231 * 1 2 3
32 32 H 1.09001 * 109.46989 * 59.99560 * 1 2 3
33 33 H 1.08997 * 109.46693 * 179.97438 * 1 2 3
34 34 H 1.08998 * 109.47363 * 240.00567 * 2 1 3
35 35 H 1.08994 * 109.47629 * 119.99877 * 2 1 3
36 36 H 1.08005 * 120.00152 * 359.97438 * 4 3 2
37 37 H 1.08001 * 119.99611 * 179.97438 * 5 4 3
38 38 H 1.07993 * 120.00247 * 180.02562 * 6 5 4
39 39 H 1.08005 * 120.00083 * 180.21300 * 7 6 5
40 40 H 1.09005 * 109.46419 * 54.99961 * 11 9 8
41 41 H 1.09002 * 109.46995 * 295.00149 * 11 9 8
42 42 H 0.97004 * 119.99681 * 0.02562 * 12 11 9
43 43 H 1.09007 * 109.46806 * 60.00106 * 15 13 12
44 44 H 1.08998 * 109.47448 * 300.00182 * 15 13 12
45 45 H 1.08010 * 126.29114 * 0.04613 * 17 16 15
46 46 H 1.08008 * 126.29481 * 179.97438 * 18 17 16
47 47 H 1.08002 * 125.89007 * 179.97438 * 19 18 17
48 48 H 0.97008 * 119.99720 * 264.99520 * 22 9 8
49 49 H 0.97001 * 120.00211 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3616 2.0377 -1.1927
5 6 2.8218 3.3410 -1.1927
6 6 2.9521 4.0281 -0.0002
7 6 2.6192 3.4128 1.1918
8 6 2.1643 2.1072 1.1923
9 6 1.8054 1.4349 2.4925
10 1 0.9567 0.7692 2.3351
11 6 3.0023 0.6251 2.9954
12 7 2.6957 0.0692 4.3157
13 6 3.6097 -0.6847 4.9582
14 8 4.6856 -0.9032 4.4432
15 6 3.2945 -1.2560 6.3166
16 6 4.4733 -2.0537 6.8119
17 6 5.5459 -1.5584 7.4618
18 6 6.4058 -2.6388 7.7410
19 6 5.8262 -3.7533 7.2506
20 7 4.6426 -3.3995 6.6736
21 1 4.0222 -4.0054 6.2392
22 7 1.4511 2.4512 3.4863
23 6 0.1736 2.9415 3.5388
24 1 -0.5727 2.5791 2.8472
25 6 -0.1619 3.9049 4.4801
26 7 0.7476 4.3468 5.3226
27 14 -1.9045 4.5742 4.5513
28 1 -2.7293 3.9196 3.5041
29 1 -2.4878 4.2949 5.8880
30 1 -1.8815 6.0405 4.3178
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3632 -1.0277 -0.0005
34 1 1.8934 -0.5137 -0.8900
35 1 1.8934 -0.5138 0.8899
36 1 2.2592 1.5012 -2.1244
37 1 3.0794 3.8227 -2.1244
38 1 3.3112 5.0466 -0.0002
39 1 2.7177 3.9507 2.1232
40 1 3.8751 1.2740 3.0680
41 1 3.2101 -0.1869 2.2986
42 1 1.8349 0.2437 4.7274
43 1 2.4216 -1.9050 6.2441
44 1 3.0864 -0.4438 7.0131
45 1 5.7147 -0.5235 7.7210
46 1 7.3553 -2.5845 8.2530
47 1 6.2319 -4.7529 7.3015
48 1 2.1215 2.7768 4.1072
49 1 0.5132 5.0203 5.9801
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001325367273.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:45
Heat of formation + Delta-G solvation = 18.719218 kcal
Electronic energy + Delta-G solvation = -29487.130947 eV
Core-core repulsion = 25606.863424 eV
Total energy + Delta-G solvation = -3880.267524 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-42.02434 -40.89503 -40.14156 -37.39424 -35.26561 -34.94427 -33.61615 -32.72733
-31.77074 -31.13193 -30.25474 -29.13138 -27.23735 -25.58399 -24.70490 -24.08812
-21.94825 -21.68292 -21.41662 -21.14317 -20.83693 -19.34248 -18.48802 -18.01500
-17.34187 -17.11155 -16.72434 -16.28827 -16.18102 -15.69502 -15.39149 -15.07385
-14.76583 -14.58978 -14.51519 -14.40660 -14.31864 -14.23453 -14.10937 -13.86623
-13.66861 -13.33098 -13.09792 -12.97187 -12.88832 -12.83001 -12.62669 -12.46772
-12.32279 -12.09693 -12.02473 -11.80943 -11.61120 -11.42011 -11.04806 -10.87213
-10.00990 -9.69361 -9.55775 -9.37290 -9.01420 -8.89514 -7.90341 -5.19482
0.57042 0.65726 1.32007 1.47677 1.51018 1.57960 1.68967 2.08310
2.40722 2.56885 2.61244 2.99184 3.44174 3.78448 3.81061 3.98074
4.03277 4.07475 4.15076 4.23723 4.28168 4.34995 4.37758 4.44134
4.48551 4.57952 4.58662 4.63442 4.68931 4.78127 4.82070 4.85276
4.88902 5.02008 5.11918 5.18378 5.27713 5.38025 5.38074 5.44669
5.47538 5.49337 5.58547 5.72001 5.80700 5.98281 6.11210 6.24598
6.27220 6.31618 6.62697 6.85893 7.30186 7.38142 8.05653 8.32615
9.31801
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.008494 B = 0.003444 C = 0.002770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3295.770023 B = 8127.877909 C =10107.327294
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.083 4.083
3 C -0.089 4.089
4 C -0.128 4.128
5 C -0.126 4.126
6 C -0.145 4.145
7 C -0.106 4.106
8 C -0.103 4.103
9 C 0.206 3.794
10 H 0.076 0.924
11 C 0.133 3.867
12 N -0.710 5.710
13 C 0.510 3.490
14 O -0.580 6.580
15 C -0.066 4.066
16 C 0.024 3.976
17 C -0.214 4.214
18 C -0.229 4.229
19 C -0.006 4.006
20 N -0.547 5.547
21 H 0.424 0.576
22 N -0.718 5.718
23 C -0.224 4.224
24 H 0.072 0.928
25 C -0.060 4.060
26 N -0.961 5.961
27 Si 0.957 3.043
28 H -0.270 1.270
29 H -0.294 1.294
30 H -0.303 1.303
31 H 0.038 0.962
32 H 0.055 0.945
33 H 0.074 0.926
34 H 0.089 0.911
35 H 0.069 0.931
36 H 0.144 0.856
37 H 0.143 0.857
38 H 0.123 0.877
39 H 0.096 0.904
40 H 0.040 0.960
41 H 0.077 0.923
42 H 0.413 0.587
43 H 0.130 0.870
44 H 0.124 0.876
45 H 0.121 0.879
46 H 0.143 0.857
47 H 0.198 0.802
48 H 0.375 0.625
49 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.425 -15.598 -5.432 16.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.120 4.120
3 C -0.089 4.089
4 C -0.146 4.146
5 C -0.144 4.144
6 C -0.163 4.163
7 C -0.125 4.125
8 C -0.106 4.106
9 C 0.097 3.903
10 H 0.094 0.906
11 C 0.008 3.992
12 N -0.362 5.362
13 C 0.297 3.703
14 O -0.460 6.460
15 C -0.106 4.106
16 C -0.090 4.090
17 C -0.239 4.239
18 C -0.253 4.253
19 C -0.138 4.138
20 N -0.143 5.143
21 H 0.263 0.737
22 N -0.358 5.358
23 C -0.355 4.355
24 H 0.090 0.910
25 C -0.253 4.253
26 N -0.612 5.612
27 Si 0.788 3.212
28 H -0.194 1.194
29 H -0.221 1.221
30 H -0.231 1.231
31 H 0.057 0.943
32 H 0.075 0.925
33 H 0.093 0.907
34 H 0.108 0.892
35 H 0.087 0.913
36 H 0.162 0.838
37 H 0.161 0.839
38 H 0.141 0.859
39 H 0.115 0.885
40 H 0.058 0.942
41 H 0.095 0.905
42 H 0.250 0.750
43 H 0.148 0.852
44 H 0.142 0.858
45 H 0.139 0.861
46 H 0.161 0.839
47 H 0.215 0.785
48 H 0.207 0.793
49 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 3.868 -15.838 -5.897 17.337
hybrid contribution -1.056 1.423 0.624 1.879
sum 2.812 -14.414 -5.273 15.604
Atomic orbital electron populations
1.21719 0.94515 1.02290 1.01535 1.20599 0.96362 0.91620 1.03397
1.20025 0.99284 0.97195 0.92412 1.21266 1.00120 0.95346 0.97830
1.21340 0.99983 0.95114 0.97973 1.21303 1.01697 1.00390 0.92907
1.21028 0.98128 0.95360 0.97969 1.20748 0.98775 0.94887 0.96203
1.19539 0.94837 0.89687 0.86278 0.90598 1.21368 0.96930 0.96516
0.84387 1.45936 1.19398 1.51266 1.19553 1.21041 0.83500 0.78094
0.87659 1.90683 1.25035 1.61161 1.69097 1.20147 0.96669 1.00722
0.93080 1.19662 0.99152 0.84249 1.05900 1.20864 0.96330 0.99314
1.07411 1.21143 1.02140 0.92739 1.09308 1.22303 0.87961 1.00840
1.02660 1.41910 1.19206 1.07112 1.46058 0.73726 1.42477 1.09535
1.46182 1.37562 1.19413 0.88011 1.16055 1.12059 0.91035 1.25282
1.00318 1.00619 0.99061 1.69793 1.33986 1.34241 1.23166 0.85319
0.81383 0.77349 0.77151 1.19424 1.22080 1.23135 0.94253 0.92548
0.90683 0.89227 0.91271 0.83778 0.83927 0.85902 0.88541 0.94170
0.90537 0.74990 0.85205 0.85813 0.86057 0.83907 0.78549 0.79270
0.94240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.29 9.72 71.98 0.70 -2.59 16
2 C -0.08 -1.94 5.38 29.85 0.16 -1.78 16
3 C -0.09 -2.61 5.13 -19.87 -0.10 -2.71 16
4 C -0.13 -3.36 9.68 22.27 0.22 -3.15 16
5 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16
6 C -0.14 -4.76 10.05 22.27 0.22 -4.53 16
7 C -0.11 -4.14 9.32 22.27 0.21 -3.93 16
8 C -0.10 -3.67 5.03 -19.86 -0.10 -3.77 16
9 C 0.21 7.42 1.97 44.25 0.09 7.51 16
10 H 0.08 2.65 5.56 -2.38 -0.01 2.64 16
11 C 0.13 4.49 5.08 86.38 0.44 4.93 16
12 N -0.71 -22.00 5.39 -463.06 -2.49 -24.50 16
13 C 0.51 15.88 7.82 87.66 0.69 16.57 16
14 O -0.58 -22.63 16.03 -3.00 -0.05 -22.68 16
15 C -0.07 -1.54 6.24 29.10 0.18 -1.36 16
16 C 0.02 0.62 5.66 41.08 0.23 0.85 16
17 C -0.21 -6.23 10.76 22.14 0.24 -6.00 16
18 C -0.23 -5.71 10.86 22.14 0.24 -5.47 16
19 C -0.01 -0.12 11.94 83.21 0.99 0.87 16
20 N -0.55 -11.23 6.08 -182.76 -1.11 -12.34 16
21 H 0.42 5.98 8.96 -92.71 -0.83 5.15 16
22 N -0.72 -32.05 3.29 -326.48 -1.07 -33.12 16
23 C -0.22 -11.19 9.92 84.03 0.83 -10.36 16
24 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16
25 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16
26 N -0.96 -55.01 13.06 21.65 0.28 -54.73 16
27 Si 0.96 43.99 29.55 68.60 2.03 46.02 16
28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
29 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
30 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16
31 H 0.04 1.09 6.80 -2.39 -0.02 1.08 16
32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16
35 H 0.07 1.66 5.58 -2.39 -0.01 1.65 16
36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16
37 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16
38 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16
39 H 0.10 4.36 7.26 -2.91 -0.02 4.34 16
40 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16
41 H 0.08 2.41 6.72 -2.39 -0.02 2.40 16
42 H 0.41 12.49 8.14 -92.71 -0.75 11.74 16
43 H 0.13 2.11 8.14 -2.38 -0.02 2.10 16
44 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16
45 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16
46 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16
47 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16
48 H 0.37 18.60 7.80 -92.70 -0.72 17.88 16
49 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16
Total: -1.00 -69.40 404.89 2.19 -67.21
By element:
Atomic # 1 Polarization: 56.32 SS G_CDS: -1.32 Total: 55.00 kcal
Atomic # 6 Polarization: -26.78 SS G_CDS: 5.93 Total: -20.85 kcal
Atomic # 7 Polarization: -120.30 SS G_CDS: -4.40 Total: -124.69 kcal
Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal
Total: -69.40 2.19 -67.21 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325367273.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.931 kcal
(2) G-P(sol) polarization free energy of solvation -69.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds