Wall clock time and date at job start Sat Apr 11 2020 06:24:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47029 * 2 1
4 4 F 1.39901 * 109.46700 * 240.00781 * 2 1 3
5 5 C 1.50693 * 109.47261 * 120.00668 * 2 1 3
6 6 O 1.21282 * 120.00218 * 354.99926 * 5 2 1
7 7 N 1.34779 * 120.00168 * 174.99875 * 5 2 1
8 8 C 1.46815 * 119.67971 * 359.97438 * 7 5 2
9 9 C 1.53421 * 107.74804 * 232.29390 * 8 7 5
10 10 C 1.52770 * 108.54814 * 302.33107 * 9 8 7
11 11 C 1.52984 * 110.66334 * 63.54299 * 10 9 8
12 12 H 1.09002 * 111.92861 * 69.67880 * 11 10 9
13 13 C 1.44280 * 119.48591 * 180.48348 * 7 5 2
14 14 H 1.08997 * 109.74737 * 11.47310 * 13 7 5
15 15 C 1.53928 * 111.12693 * 249.39354 * 13 7 5
16 16 C 1.54226 * 104.68999 * 216.17365 * 15 13 7
17 17 N 1.48549 * 107.24756 * 359.47164 * 16 15 13
18 18 C 1.46899 * 111.55878 * 145.49403 * 17 16 15
19 19 C 1.50698 * 109.47564 * 52.90051 * 18 17 16
20 20 O 1.21293 * 119.99827 * 359.97438 * 19 18 17
21 21 N 1.34778 * 120.00366 * 180.02562 * 19 18 17
22 22 C 1.37100 * 119.99825 * 179.97438 * 21 19 18
23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 19
24 24 C 1.38946 * 119.99685 * 179.97438 * 22 21 19
25 25 N 1.31421 * 120.00082 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 120.00049 * 180.02562 * 24 22 21
27 27 H 1.48498 * 109.47171 * 359.97438 * 26 24 22
28 28 H 1.48495 * 109.47089 * 120.00046 * 26 24 22
29 29 H 1.48499 * 109.47133 * 240.00083 * 26 24 22
30 30 H 1.09001 * 109.46827 * 299.99212 * 1 2 3
31 31 H 1.08995 * 109.47524 * 59.99833 * 1 2 3
32 32 H 1.09004 * 109.46790 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46962 * 179.97438 * 3 2 1
34 34 H 1.09003 * 109.47614 * 300.00732 * 3 2 1
35 35 H 1.09001 * 109.46672 * 60.00693 * 3 2 1
36 36 H 1.09005 * 109.79790 * 112.73911 * 8 7 5
37 37 H 1.08994 * 109.85574 * 351.89420 * 8 7 5
38 38 H 1.08998 * 109.62476 * 182.61040 * 9 8 7
39 39 H 1.09004 * 109.77869 * 62.14105 * 9 8 7
40 40 H 1.08995 * 109.23848 * 303.23101 * 10 9 8
41 41 H 1.09003 * 109.20701 * 183.82556 * 10 9 8
42 42 H 1.08994 * 110.39344 * 334.97864 * 15 13 7
43 43 H 1.09001 * 110.39275 * 97.37184 * 15 13 7
44 44 H 1.08999 * 109.96890 * 118.32338 * 16 15 13
45 45 H 1.09005 * 109.96855 * 239.57533 * 16 15 13
46 46 H 1.09004 * 109.46935 * 172.89821 * 18 17 16
47 47 H 1.09006 * 109.47520 * 292.89663 * 18 17 16
48 48 H 0.97000 * 120.00070 * 359.97438 * 21 19 18
49 49 H 0.96997 * 120.00182 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 9 1.9963 -0.6594 -1.1424
5 6 2.0324 -0.7105 1.2303
6 8 1.2481 -1.0916 2.0733
7 7 3.3533 -0.9225 1.3940
8 6 4.2965 -0.4588 0.3689
9 6 5.1827 -1.6481 -0.0235
10 6 5.8835 -2.1667 1.2311
11 6 4.8628 -2.7010 2.2376
12 1 4.3950 -3.6231 1.8926
13 6 3.8212 -1.6132 2.5711
14 1 2.9766 -2.0582 3.0971
15 6 4.5858 -0.6596 3.5068
16 6 5.7194 -1.5202 4.1009
17 7 5.5802 -2.8855 3.5323
18 6 6.8889 -3.5193 3.3237
19 6 7.6822 -3.4670 4.6039
20 8 7.2046 -2.9519 5.5927
21 7 8.9228 -3.9917 4.6499
22 6 9.6447 -3.9436 5.8145
23 1 9.2194 -3.4849 6.6949
24 6 10.9234 -4.4850 5.8620
25 7 11.4408 -5.0436 4.7908
26 14 11.9068 -4.4201 7.4489
27 1 11.1053 -3.7444 8.5006
28 1 12.2334 -5.8013 7.8856
29 1 13.1636 -3.6625 7.2218
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3633 -1.0277 -0.0005
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 1.6767 1.9562 0.8901
36 1 4.9136 0.3446 0.7714
37 1 3.7492 -0.1022 -0.5036
38 1 5.9269 -1.3255 -0.7516
39 1 4.5688 -2.4395 -0.4536
40 1 6.4482 -1.3546 1.6888
41 1 6.5681 -2.9684 0.9539
42 1 4.9992 0.1760 2.9421
43 1 3.9297 -0.2969 4.2981
44 1 6.6876 -1.1073 3.8177
45 1 5.6318 -1.5530 5.1869
46 1 6.7461 -4.5585 3.0270
47 1 7.4290 -2.9885 2.5396
48 1 9.3050 -4.4034 3.8591
49 1 12.3336 -5.4212 4.8239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569901242.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:15
Heat of formation + Delta-G solvation = -94.879689 kcal
Electronic energy + Delta-G solvation = -31584.473581 eV
Core-core repulsion = 27268.510814 eV
Total energy + Delta-G solvation = -4315.962767 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 341.190 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-48.44132 -41.16184 -39.31887 -37.90850 -35.89280 -34.16443 -33.86521 -33.18793
-31.38703 -30.89412 -29.21975 -27.90872 -26.65593 -25.77982 -24.37692 -23.40400
-22.73528 -20.99017 -20.29305 -19.01900 -18.90082 -18.00807 -17.81200 -16.84093
-16.33312 -16.06015 -15.72510 -15.68056 -15.17024 -14.91916 -14.68168 -14.53473
-14.06361 -13.93196 -13.79330 -13.64303 -13.32737 -13.23201 -12.97978 -12.82241
-12.59844 -12.55026 -12.50054 -12.29211 -12.11755 -12.02280 -11.65720 -11.56117
-11.44527 -11.32578 -11.16142 -10.99960 -10.90122 -10.76976 -10.35376 -10.30990
-10.23874 -9.93236 -9.52082 -8.88566 -8.38746 -7.99655 -7.89109 -6.43409
-3.84137 2.10515 2.54156 3.15024 3.25838 3.32993 3.71675 3.88115
3.95872 4.03828 4.15474 4.22652 4.29964 4.48995 4.62203 4.65443
4.75332 4.86259 4.99496 5.05386 5.09846 5.16674 5.18471 5.22250
5.24490 5.30932 5.34444 5.42842 5.47536 5.54321 5.59954 5.70417
5.73000 5.74703 5.85216 5.85265 5.96569 6.02039 6.12522 6.24222
6.30515 6.36987 6.62185 7.00937 7.17580 7.23723 7.53983 7.73530
8.04567 8.59733 9.16481 9.52345 10.03828 10.74383
Molecular weight = 341.19amu
Principal moments of inertia in cm(-1)
A = 0.031321 B = 0.002347 C = 0.002275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.751380 B =11925.857912 C =12304.285777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.103 3.897
3 C -0.182 4.182
4 F -0.192 7.192
5 C 0.499 3.501
6 O -0.520 6.520
7 N -0.584 5.584
8 C 0.086 3.914
9 C -0.128 4.128
10 C -0.153 4.153
11 C 0.060 3.940
12 H 0.099 0.901
13 C 0.140 3.860
14 H 0.111 0.889
15 C -0.142 4.142
16 C 0.055 3.945
17 N -0.491 5.491
18 C 0.032 3.968
19 C 0.442 3.558
20 O -0.581 6.581
21 N -0.563 5.563
22 C -0.297 4.297
23 H 0.104 0.896
24 C 0.022 3.978
25 N -0.902 5.902
26 Si 0.929 3.071
27 H -0.268 1.268
28 H -0.281 1.281
29 H -0.282 1.282
30 H 0.084 0.916
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.080 0.920
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.072 0.928
37 H 0.103 0.897
38 H 0.077 0.923
39 H 0.071 0.929
40 H 0.069 0.931
41 H 0.075 0.925
42 H 0.065 0.935
43 H 0.074 0.926
44 H 0.041 0.959
45 H 0.103 0.897
46 H 0.090 0.910
47 H 0.058 0.942
48 H 0.392 0.608
49 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.074 11.703 -15.775 25.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.082 3.918
3 C -0.240 4.240
4 F -0.172 7.172
5 C 0.284 3.716
6 O -0.396 6.396
7 N -0.315 5.315
8 C -0.036 4.036
9 C -0.167 4.167
10 C -0.192 4.192
11 C -0.049 4.049
12 H 0.117 0.883
13 C 0.036 3.964
14 H 0.129 0.871
15 C -0.181 4.181
16 C -0.072 4.072
17 N -0.214 5.214
18 C -0.100 4.100
19 C 0.227 3.773
20 O -0.465 6.465
21 N -0.200 5.200
22 C -0.427 4.427
23 H 0.121 0.879
24 C -0.180 4.180
25 N -0.543 5.543
26 Si 0.756 3.244
27 H -0.192 1.192
28 H -0.207 1.207
29 H -0.208 1.208
30 H 0.103 0.897
31 H 0.094 0.906
32 H 0.094 0.906
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.102 0.898
36 H 0.090 0.910
37 H 0.121 0.879
38 H 0.096 0.904
39 H 0.090 0.910
40 H 0.088 0.912
41 H 0.094 0.906
42 H 0.084 0.916
43 H 0.093 0.907
44 H 0.059 0.941
45 H 0.121 0.879
46 H 0.108 0.892
47 H 0.075 0.925
48 H 0.225 0.775
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -16.864 11.383 -14.304 24.871
hybrid contribution 1.628 0.104 -0.475 1.699
sum -15.236 11.487 -14.780 24.135
Atomic orbital electron populations
1.22162 0.90679 1.04701 1.03943 1.21169 0.96992 0.92971 0.80687
1.22622 1.03403 0.93052 1.04898 1.92865 1.89746 1.82789 1.51812
1.20855 0.82575 0.80003 0.88172 1.90737 1.54830 1.49949 1.44054
1.47355 1.05820 1.56412 1.21882 1.22327 0.92412 0.97320 0.91503
1.21818 0.98998 0.97941 0.97899 1.22213 0.99028 1.01691 0.96269
1.23103 0.94067 0.97852 0.89927 0.88330 1.21229 0.98072 0.92203
0.84921 0.87071 1.22790 0.98254 0.98182 0.98853 1.22930 0.95565
0.86519 1.02228 1.64873 1.17735 1.19750 1.19075 1.22177 0.89840
1.00652 0.97283 1.19742 0.83080 0.84788 0.89662 1.90501 1.70152
1.49056 1.36778 1.41855 1.12935 1.51643 1.13533 1.19743 0.96366
1.35734 0.90853 0.87865 1.25265 0.97274 0.96732 0.98720 1.69621
1.17369 1.38870 1.28452 0.85805 0.79234 0.77948 0.81396 1.19222
1.20722 1.20793 0.89741 0.90639 0.90625 0.90117 0.89869 0.89842
0.90988 0.87902 0.90405 0.90990 0.91227 0.90646 0.91605 0.90678
0.94059 0.87876 0.89171 0.92458 0.77496 0.91925
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.18 8.23 37.16 0.31 -0.87 16
2 C 0.10 0.88 1.20 -91.77 -0.11 0.77 16
3 C -0.18 -1.06 8.53 37.16 0.32 -0.74 16
4 F -0.19 -1.76 14.68 2.25 0.03 -1.73 16
5 C 0.50 5.79 6.77 -10.99 -0.07 5.72 16
6 O -0.52 -7.74 15.28 5.56 0.08 -7.66 16
7 N -0.58 -6.37 2.68 -165.90 -0.44 -6.82 16
8 C 0.09 0.73 4.39 -3.65 -0.02 0.71 16
9 C -0.13 -1.12 6.10 -26.63 -0.16 -1.29 16
10 C -0.15 -1.71 3.56 -26.86 -0.10 -1.81 16
11 C 0.06 0.79 3.64 -65.81 -0.24 0.55 16
12 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16
13 C 0.14 1.82 3.09 -67.97 -0.21 1.61 16
14 H 0.11 1.68 6.91 -51.93 -0.36 1.33 16
15 C -0.14 -1.87 6.13 -25.61 -0.16 -2.03 16
16 C 0.06 0.92 4.38 -2.27 -0.01 0.91 16
17 N -0.49 -8.20 5.25 -223.27 -1.17 -9.37 16
18 C 0.03 0.57 4.95 -4.98 -0.02 0.54 16
19 C 0.44 10.29 7.38 -10.99 -0.08 10.21 16
20 O -0.58 -15.33 13.44 5.55 0.07 -15.26 16
21 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16
22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16
23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16
24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16
26 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16
27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16
29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
30 H 0.08 0.62 8.05 -51.93 -0.42 0.21 16
31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16
32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.08 0.44 5.39 -51.93 -0.28 0.16 16
34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.07 0.55 7.43 -51.93 -0.39 0.17 16
37 H 0.10 0.75 3.75 -51.93 -0.19 0.55 16
38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16
39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16
41 H 0.07 0.84 6.84 -51.93 -0.36 0.49 16
42 H 0.07 0.77 7.15 -51.93 -0.37 0.40 16
43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
44 H 0.04 0.72 7.13 -51.93 -0.37 0.35 16
45 H 0.10 2.03 6.82 -51.93 -0.35 1.68 16
46 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16
47 H 0.06 0.91 5.55 -51.93 -0.29 0.62 16
48 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16
49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16
LS Contribution 372.12 15.07 5.61 5.61
Total: -1.00 -31.98 372.12 -8.32 -40.30
By element:
Atomic # 1 Polarization: 17.78 SS G_CDS: -7.35 Total: 10.43 kcal
Atomic # 6 Polarization: 7.20 SS G_CDS: -0.80 Total: 6.40 kcal
Atomic # 7 Polarization: -53.12 SS G_CDS: -0.95 Total: -54.07 kcal
Atomic # 8 Polarization: -23.07 SS G_CDS: 0.16 Total: -22.91 kcal
Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.73 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -31.98 -8.32 -40.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569901242.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.576 kcal
(2) G-P(sol) polarization free energy of solvation -31.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds