Wall clock time and date at job start Sat Apr 11 2020 06:24:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47029 * 2 1
4 4 F 1.39901 * 109.46700 * 240.00781 * 2 1 3
5 5 C 1.50693 * 109.47261 * 120.00668 * 2 1 3
6 6 O 1.21282 * 120.00218 * 354.99926 * 5 2 1
7 7 N 1.34779 * 120.00168 * 174.99875 * 5 2 1
8 8 C 1.46815 * 119.67971 * 359.97438 * 7 5 2
9 9 C 1.53421 * 107.74804 * 232.29390 * 8 7 5
10 10 C 1.52770 * 108.54814 * 302.33107 * 9 8 7
11 11 C 1.52984 * 110.66334 * 63.54299 * 10 9 8
12 12 H 1.09002 * 111.92861 * 69.67880 * 11 10 9
13 13 C 1.44280 * 119.48591 * 180.48348 * 7 5 2
14 14 H 1.08997 * 109.74737 * 11.47310 * 13 7 5
15 15 C 1.53928 * 111.12693 * 249.39354 * 13 7 5
16 16 C 1.54226 * 104.68999 * 216.17365 * 15 13 7
17 17 N 1.48549 * 107.24756 * 359.47164 * 16 15 13
18 18 C 1.46899 * 111.55878 * 145.49403 * 17 16 15
19 19 C 1.50698 * 109.47564 * 52.90051 * 18 17 16
20 20 O 1.21293 * 119.99827 * 359.97438 * 19 18 17
21 21 N 1.34778 * 120.00366 * 180.02562 * 19 18 17
22 22 C 1.37100 * 119.99825 * 179.97438 * 21 19 18
23 23 H 1.07999 * 119.99987 * 359.97438 * 22 21 19
24 24 C 1.38946 * 119.99685 * 179.97438 * 22 21 19
25 25 N 1.31421 * 120.00082 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 120.00049 * 180.02562 * 24 22 21
27 27 H 1.48498 * 109.47171 * 359.97438 * 26 24 22
28 28 H 1.48495 * 109.47089 * 120.00046 * 26 24 22
29 29 H 1.48499 * 109.47133 * 240.00083 * 26 24 22
30 30 H 1.09001 * 109.46827 * 299.99212 * 1 2 3
31 31 H 1.08995 * 109.47524 * 59.99833 * 1 2 3
32 32 H 1.09004 * 109.46790 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46962 * 179.97438 * 3 2 1
34 34 H 1.09003 * 109.47614 * 300.00732 * 3 2 1
35 35 H 1.09001 * 109.46672 * 60.00693 * 3 2 1
36 36 H 1.09005 * 109.79790 * 112.73911 * 8 7 5
37 37 H 1.08994 * 109.85574 * 351.89420 * 8 7 5
38 38 H 1.08998 * 109.62476 * 182.61040 * 9 8 7
39 39 H 1.09004 * 109.77869 * 62.14105 * 9 8 7
40 40 H 1.08995 * 109.23848 * 303.23101 * 10 9 8
41 41 H 1.09003 * 109.20701 * 183.82556 * 10 9 8
42 42 H 1.08994 * 110.39344 * 334.97864 * 15 13 7
43 43 H 1.09001 * 110.39275 * 97.37184 * 15 13 7
44 44 H 1.08999 * 109.96890 * 118.32338 * 16 15 13
45 45 H 1.09005 * 109.96855 * 239.57533 * 16 15 13
46 46 H 1.09004 * 109.46935 * 172.89821 * 18 17 16
47 47 H 1.09006 * 109.47520 * 292.89663 * 18 17 16
48 48 H 0.97000 * 120.00070 * 359.97438 * 21 19 18
49 49 H 0.96997 * 120.00182 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 9 1.9963 -0.6594 -1.1424
5 6 2.0324 -0.7105 1.2303
6 8 1.2481 -1.0916 2.0733
7 7 3.3533 -0.9225 1.3940
8 6 4.2965 -0.4588 0.3689
9 6 5.1827 -1.6481 -0.0235
10 6 5.8835 -2.1667 1.2311
11 6 4.8628 -2.7010 2.2376
12 1 4.3950 -3.6231 1.8926
13 6 3.8212 -1.6132 2.5711
14 1 2.9766 -2.0582 3.0971
15 6 4.5858 -0.6596 3.5068
16 6 5.7194 -1.5202 4.1009
17 7 5.5802 -2.8855 3.5323
18 6 6.8889 -3.5193 3.3237
19 6 7.6822 -3.4670 4.6039
20 8 7.2046 -2.9519 5.5927
21 7 8.9228 -3.9917 4.6499
22 6 9.6447 -3.9436 5.8145
23 1 9.2194 -3.4849 6.6949
24 6 10.9234 -4.4850 5.8620
25 7 11.4408 -5.0436 4.7908
26 14 11.9068 -4.4201 7.4489
27 1 11.1053 -3.7444 8.5006
28 1 12.2334 -5.8013 7.8856
29 1 13.1636 -3.6625 7.2218
30 1 -0.3633 0.5137 0.8901
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3633 -1.0277 -0.0005
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9564 -0.8899
35 1 1.6767 1.9562 0.8901
36 1 4.9136 0.3446 0.7714
37 1 3.7492 -0.1022 -0.5036
38 1 5.9269 -1.3255 -0.7516
39 1 4.5688 -2.4395 -0.4536
40 1 6.4482 -1.3546 1.6888
41 1 6.5681 -2.9684 0.9539
42 1 4.9992 0.1760 2.9421
43 1 3.9297 -0.2969 4.2981
44 1 6.6876 -1.1073 3.8177
45 1 5.6318 -1.5530 5.1869
46 1 6.7461 -4.5585 3.0270
47 1 7.4290 -2.9885 2.5396
48 1 9.3050 -4.4034 3.8591
49 1 12.3336 -5.4212 4.8239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569901242.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:14
Heat of formation + Delta-G solvation = -117.652587 kcal
Electronic energy + Delta-G solvation = -31585.461088 eV
Core-core repulsion = 27268.510814 eV
Total energy + Delta-G solvation = -4316.950274 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 341.190 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.12212 -42.19281 -40.58291 -39.50459 -37.01009 -35.90474 -34.78009 -34.13471
-33.30096 -32.20840 -30.25221 -28.55817 -28.13867 -26.68405 -26.12883 -24.31282
-23.59279 -22.31178 -21.28979 -20.73005 -19.82098 -19.76531 -18.82493 -17.78682
-17.67110 -17.04848 -16.94111 -16.71779 -16.47197 -16.09726 -15.93347 -15.80178
-15.55976 -15.20009 -15.02509 -14.63221 -14.49679 -14.14663 -13.90120 -13.72634
-13.60763 -13.51983 -13.38845 -13.28509 -13.18719 -13.07795 -12.96734 -12.92129
-12.61330 -12.49900 -12.41400 -12.36190 -12.12342 -12.08639 -11.88894 -11.66735
-11.49098 -11.35801 -10.80283 -10.28040 -10.01911 -9.76675 -9.27238 -8.47868
-5.96211 1.22511 1.35150 1.40760 1.54581 1.67169 2.03009 2.27702
2.79989 2.98167 3.19024 3.24836 3.38310 3.42762 3.57493 3.70368
3.75228 3.85301 3.90623 3.97163 4.05947 4.17673 4.29562 4.38857
4.43806 4.49150 4.50285 4.53620 4.58683 4.63651 4.65466 4.68580
4.84589 4.89404 4.91600 4.96512 5.04542 5.08051 5.10992 5.15204
5.21264 5.33350 5.40214 5.40757 5.82164 5.88638 6.05664 6.16329
6.59265 6.84970 7.11902 7.54375 8.10198 8.69773
Molecular weight = 341.19amu
Principal moments of inertia in cm(-1)
A = 0.031321 B = 0.002347 C = 0.002275
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.751380 B =11925.857912 C =12304.285777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.107 3.893
3 C -0.179 4.179
4 F -0.194 7.194
5 C 0.491 3.509
6 O -0.562 6.562
7 N -0.581 5.581
8 C 0.082 3.918
9 C -0.122 4.122
10 C -0.150 4.150
11 C 0.064 3.936
12 H 0.100 0.900
13 C 0.148 3.852
14 H 0.084 0.916
15 C -0.128 4.128
16 C 0.063 3.937
17 N -0.513 5.513
18 C 0.047 3.953
19 C 0.439 3.561
20 O -0.616 6.616
21 N -0.572 5.572
22 C -0.330 4.330
23 H 0.078 0.922
24 C -0.013 4.013
25 N -0.920 5.920
26 Si 0.992 3.008
27 H -0.275 1.275
28 H -0.272 1.272
29 H -0.270 1.270
30 H 0.082 0.918
31 H 0.101 0.899
32 H 0.058 0.942
33 H 0.087 0.913
34 H 0.106 0.894
35 H 0.085 0.915
36 H 0.087 0.913
37 H 0.121 0.879
38 H 0.103 0.897
39 H 0.069 0.931
40 H 0.063 0.937
41 H 0.079 0.921
42 H 0.088 0.912
43 H 0.071 0.929
44 H 0.031 0.969
45 H 0.063 0.937
46 H 0.107 0.893
47 H 0.083 0.917
48 H 0.396 0.604
49 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.775 12.911 -18.262 27.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.086 3.914
3 C -0.236 4.236
4 F -0.174 7.174
5 C 0.278 3.722
6 O -0.440 6.440
7 N -0.311 5.311
8 C -0.038 4.038
9 C -0.160 4.160
10 C -0.188 4.188
11 C -0.044 4.044
12 H 0.118 0.882
13 C 0.042 3.958
14 H 0.102 0.898
15 C -0.167 4.167
16 C -0.065 4.065
17 N -0.237 5.237
18 C -0.084 4.084
19 C 0.226 3.774
20 O -0.502 6.502
21 N -0.209 5.209
22 C -0.460 4.460
23 H 0.096 0.904
24 C -0.213 4.213
25 N -0.561 5.561
26 Si 0.815 3.185
27 H -0.199 1.199
28 H -0.197 1.197
29 H -0.195 1.195
30 H 0.101 0.899
31 H 0.120 0.880
32 H 0.077 0.923
33 H 0.106 0.894
34 H 0.124 0.876
35 H 0.104 0.896
36 H 0.105 0.895
37 H 0.139 0.861
38 H 0.121 0.879
39 H 0.088 0.912
40 H 0.081 0.919
41 H 0.097 0.903
42 H 0.106 0.894
43 H 0.090 0.910
44 H 0.050 0.950
45 H 0.082 0.918
46 H 0.125 0.875
47 H 0.100 0.900
48 H 0.230 0.770
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -16.553 12.593 -16.845 26.764
hybrid contribution 1.472 -0.295 0.301 1.531
sum -15.081 12.298 -16.544 25.542
Atomic orbital electron populations
1.22194 0.90134 1.04025 1.05149 1.21223 0.97405 0.93917 0.78861
1.22656 1.03864 0.90930 1.06191 1.92861 1.89806 1.83098 1.51665
1.21567 0.82322 0.79452 0.88847 1.90718 1.55855 1.51627 1.45804
1.47425 1.06279 1.55810 1.21566 1.22599 0.92219 0.97609 0.91408
1.21807 0.99345 0.97890 0.96972 1.22155 0.98401 1.01588 0.96675
1.23118 0.94238 0.98214 0.88865 0.88166 1.20920 0.96933 0.92191
0.85760 0.89774 1.22661 0.96940 0.98178 0.98923 1.22688 0.96395
0.87314 1.00135 1.64780 1.17308 1.19888 1.21718 1.22044 0.89839
1.02177 0.94388 1.20741 0.82633 0.82876 0.91140 1.90491 1.70817
1.50098 1.38836 1.41907 1.13599 1.52378 1.13061 1.19664 0.97603
1.37434 0.91264 0.90430 1.26019 0.97568 0.95820 1.01850 1.69675
1.17886 1.38739 1.29769 0.84889 0.77827 0.78302 0.77434 1.19934
1.19678 1.19473 0.89932 0.88010 0.92299 0.89403 0.87568 0.89618
0.89483 0.86128 0.87881 0.91183 0.91850 0.90253 0.89370 0.91039
0.95048 0.91839 0.87540 0.89959 0.76997 0.91295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.11 8.23 71.98 0.59 -1.52 16
2 C 0.11 1.58 1.20 -11.54 -0.01 1.57 16
3 C -0.18 -1.49 8.53 71.98 0.61 -0.87 16
4 F -0.19 -3.03 14.68 44.97 0.66 -2.37 16
5 C 0.49 10.94 6.77 87.65 0.59 11.53 16
6 O -0.56 -16.99 15.28 -3.04 -0.05 -17.03 16
7 N -0.58 -11.79 2.68 -797.17 -2.13 -13.92 16
8 C 0.08 1.13 4.39 86.46 0.38 1.51 16
9 C -0.12 -1.73 6.10 30.66 0.19 -1.54 16
10 C -0.15 -2.99 3.56 30.51 0.11 -2.88 16
11 C 0.06 1.64 3.64 44.90 0.16 1.81 16
12 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16
13 C 0.15 3.79 3.09 46.14 0.14 3.93 16
14 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16
15 C -0.13 -3.35 6.13 31.32 0.19 -3.16 16
16 C 0.06 2.15 4.38 86.40 0.38 2.53 16
17 N -0.51 -17.28 5.25 -860.30 -4.52 -21.80 16
18 C 0.05 1.63 4.95 85.56 0.42 2.06 16
19 C 0.44 20.96 7.38 87.66 0.65 21.61 16
20 O -0.62 -34.03 13.44 -3.07 -0.04 -34.07 16
21 N -0.57 -29.36 5.29 -306.99 -1.62 -30.99 16
22 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16
23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16
24 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16
25 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16
26 Si 0.99 43.06 29.55 68.60 2.03 45.09 16
27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
29 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
30 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16
31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16
33 H 0.09 0.61 5.39 -2.39 -0.01 0.60 16
34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16
35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
36 H 0.09 0.99 7.43 -2.38 -0.02 0.97 16
37 H 0.12 1.28 3.75 -2.39 -0.01 1.27 16
38 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
40 H 0.06 1.38 6.39 -2.39 -0.02 1.36 16
41 H 0.08 1.55 6.84 -2.39 -0.02 1.53 16
42 H 0.09 1.92 7.15 -2.39 -0.02 1.90 16
43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
44 H 0.03 1.11 7.13 -2.39 -0.02 1.10 16
45 H 0.06 2.67 6.82 -2.38 -0.02 2.65 16
46 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16
47 H 0.08 2.49 5.55 -2.38 -0.01 2.48 16
48 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16
49 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16
Total: -1.00 -72.11 372.12 0.55 -71.56
By element:
Atomic # 1 Polarization: 34.05 SS G_CDS: 0.25 Total: 34.30 kcal
Atomic # 6 Polarization: 12.71 SS G_CDS: 5.69 Total: 18.40 kcal
Atomic # 7 Polarization: -107.88 SS G_CDS: -7.99 Total: -115.88 kcal
Atomic # 8 Polarization: -51.01 SS G_CDS: -0.09 Total: -51.10 kcal
Atomic # 9 Polarization: -3.03 SS G_CDS: 0.66 Total: -2.37 kcal
Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal
Total: -72.11 0.55 -71.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569901242.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.090 kcal
(2) G-P(sol) polarization free energy of solvation -72.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds