Wall clock time and date at job start Sat Apr 11 2020 06:24:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34236 * 126.50495 * 2 1
4 4 N 1.36823 * 109.92981 * 179.71416 * 3 2 1
5 5 C 1.46498 * 125.06473 * 180.28666 * 4 3 2
6 6 C 1.50700 * 109.47141 * 264.97630 * 5 4 3
7 7 O 1.21280 * 120.00033 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00342 * 180.02562 * 6 5 4
9 9 C 1.46495 * 120.00039 * 179.97438 * 8 6 5
10 10 C 1.53003 * 109.46917 * 185.11087 * 9 8 6
11 11 H 1.08999 * 109.87568 * 305.51437 * 10 9 8
12 12 C 1.54320 * 109.88414 * 66.53295 * 10 9 8
13 13 C 1.55400 * 102.83442 * 141.51905 * 12 10 9
14 14 C 1.54912 * 101.66264 * 324.66190 * 13 12 10
15 15 N 1.47025 * 109.88567 * 184.49950 * 10 9 8
16 16 C 1.36940 * 125.64874 * 61.60168 * 15 10 9
17 17 H 1.07997 * 119.99646 * 14.81745 * 16 15 10
18 18 C 1.38811 * 120.00036 * 194.81746 * 16 15 10
19 19 N 1.31611 * 120.00073 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 119.99658 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47381 * 89.99798 * 20 18 16
22 22 H 1.48508 * 109.46829 * 209.99965 * 20 18 16
23 23 H 1.48497 * 109.47035 * 329.99516 * 20 18 16
24 24 C 1.37685 * 109.87716 * 0.26264 * 4 3 2
25 25 C 1.39126 * 133.51567 * 179.97438 * 24 4 3
26 26 C 1.37748 * 119.78513 * 179.97438 * 25 24 4
27 27 C 1.38831 * 120.66443 * 0.04128 * 26 25 24
28 28 C 1.36626 * 120.52586 * 359.96163 * 27 26 25
29 29 C 1.39628 * 119.76626 * 0.02562 * 28 27 26
30 30 H 1.09007 * 109.46962 * 90.02414 * 1 2 3
31 31 H 1.08998 * 109.47624 * 210.02381 * 1 2 3
32 32 H 1.08997 * 109.46793 * 330.03240 * 1 2 3
33 33 H 1.08000 * 125.03093 * 359.97428 * 3 2 1
34 34 H 1.09002 * 109.47008 * 24.97090 * 5 4 3
35 35 H 1.08998 * 109.47473 * 144.97557 * 5 4 3
36 36 H 0.97004 * 119.99766 * 359.97438 * 8 6 5
37 37 H 1.08997 * 109.47168 * 305.10999 * 9 8 6
38 38 H 1.08996 * 109.47241 * 65.11417 * 9 8 6
39 39 H 1.09005 * 110.72014 * 259.97448 * 12 10 9
40 40 H 1.09001 * 110.72067 * 23.24541 * 12 10 9
41 41 H 1.08998 * 111.03670 * 206.53253 * 13 12 10
42 42 H 1.08994 * 110.89273 * 82.72620 * 13 12 10
43 43 H 1.09005 * 110.36759 * 278.08876 * 14 13 12
44 44 H 1.09001 * 110.46107 * 155.80813 * 14 13 12
45 45 H 0.97006 * 120.00157 * 179.97438 * 19 18 16
46 46 H 1.08005 * 120.10630 * 359.97438 * 25 24 4
47 47 H 1.07994 * 119.66667 * 180.02562 * 26 25 24
48 48 H 1.07998 * 119.73301 * 179.97438 * 27 26 25
49 49 H 1.08006 * 120.11336 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3056 1.0790 0.0000
4 7 3.6170 0.6887 0.0064
5 6 4.7657 1.5979 0.0143
6 6 5.2444 1.8146 -1.3981
7 8 4.6819 1.2636 -2.3204
8 7 6.2985 2.6201 -1.6362
9 6 6.7642 2.8304 -3.0092
10 6 8.0395 3.6756 -2.9913
11 1 7.8633 4.6005 -2.4421
12 6 9.1857 2.8823 -2.3292
13 6 10.4184 3.2724 -3.1914
14 6 9.7878 3.3971 -4.6009
15 7 8.4552 3.9828 -4.3677
16 6 7.7250 4.6943 -5.2819
17 1 6.8788 5.2818 -4.9576
18 6 8.0725 4.6604 -6.6254
19 7 9.1040 3.9448 -7.0205
20 14 7.0768 5.6316 -7.8724
21 1 7.6527 6.9930 -8.0135
22 1 7.1167 4.9387 -9.1853
23 1 5.6696 5.7348 -7.4098
24 6 3.6963 -0.6859 0.0049
25 6 4.7587 -1.5841 0.0088
26 6 4.5094 -2.9388 0.0062
27 6 3.2068 -3.4191 -0.0011
28 6 2.1486 -2.5548 -0.0051
29 6 2.3784 -1.1776 -0.0024
30 1 -0.3633 -0.0004 -1.0277
31 1 -0.3634 -0.8897 0.5142
32 1 -0.3633 0.8903 0.5133
33 1 1.9635 2.1034 -0.0004
34 1 4.4700 2.5531 0.4483
35 1 5.5696 1.1624 0.6077
36 1 6.7487 3.0606 -0.8985
37 1 6.9735 1.8667 -3.4734
38 1 5.9930 3.3484 -3.5791
39 1 9.3223 3.1938 -1.2936
40 1 8.9975 1.8103 -2.3889
41 1 11.1749 2.4880 -3.1699
42 1 10.8357 4.2247 -2.8645
43 1 9.6947 2.4143 -5.0631
44 1 10.3870 4.0559 -5.2294
45 1 9.3466 3.9208 -7.9594
46 1 5.7756 -1.2204 0.0138
47 1 5.3355 -3.6344 0.0097
48 1 3.0286 -4.4842 -0.0035
49 1 1.1379 -2.9357 -0.0113
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713515824.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:22
Heat of formation + Delta-G solvation = 49.146581 kcal
Electronic energy + Delta-G solvation = -29155.837873 eV
Core-core repulsion = 25276.889778 eV
Total energy + Delta-G solvation = -3878.948094 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.51042 -39.44995 -37.71097 -36.98241 -34.36906 -33.83905 -32.53874 -30.75110
-30.01081 -29.65368 -29.00149 -28.13372 -25.65613 -24.75886 -23.70817 -22.70837
-21.62203 -20.59654 -20.17954 -19.67909 -19.48586 -17.52284 -17.06068 -16.67334
-16.58917 -15.68701 -15.48997 -15.29864 -14.81863 -14.70502 -14.21083 -14.05526
-13.87909 -13.82271 -13.40384 -13.34786 -13.18218 -12.82438 -12.73538 -12.30265
-12.17770 -12.11587 -11.94403 -11.75856 -11.56754 -11.44918 -11.38021 -10.99519
-10.83952 -10.82417 -10.31851 -10.16476 -10.04587 -9.91970 -9.83796 -9.74403
-9.47603 -8.79628 -8.62838 -8.18701 -7.58372 -6.89645 -5.81882 -3.18991
1.10665 1.60136 2.45440 2.63085 2.69598 3.34311 3.39127 3.43059
3.44482 3.91167 4.43580 4.48305 4.57389 4.68131 4.74232 4.78367
4.92375 5.07184 5.20795 5.26728 5.28102 5.33249 5.43275 5.48517
5.56106 5.62483 5.66769 5.70835 5.74258 5.83336 5.91194 5.97477
6.05284 6.12793 6.16604 6.38652 6.45615 6.46945 6.52638 6.58161
6.61399 6.71384 6.72734 6.77522 6.97314 7.16594 7.20537 7.45774
7.55378 7.62354 7.73985 8.19968 8.30637 9.12015 9.72591 10.39511
11.30061
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.013842 B = 0.002487 C = 0.002320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2022.306249 B =11254.288388 C =12067.838302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.176 4.176
3 C 0.060 3.940
4 N -0.466 5.466
5 C 0.091 3.909
6 C 0.483 3.517
7 O -0.520 6.520
8 N -0.720 5.720
9 C 0.110 3.890
10 C 0.152 3.848
11 H 0.037 0.963
12 C -0.126 4.126
13 C -0.148 4.148
14 C 0.172 3.828
15 N -0.588 5.588
16 C -0.236 4.236
17 H 0.075 0.925
18 C 0.000 4.000
19 N -0.914 5.914
20 Si 0.911 3.089
21 H -0.288 1.288
22 H -0.289 1.289
23 H -0.280 1.280
24 C 0.112 3.888
25 C -0.124 4.124
26 C -0.102 4.102
27 C -0.150 4.150
28 C -0.072 4.072
29 C -0.102 4.102
30 H 0.062 0.938
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.165 0.835
34 H 0.118 0.882
35 H 0.113 0.887
36 H 0.396 0.604
37 H 0.065 0.935
38 H 0.067 0.933
39 H 0.058 0.942
40 H 0.062 0.938
41 H 0.058 0.942
42 H 0.058 0.942
43 H 0.026 0.974
44 H 0.073 0.927
45 H 0.254 0.746
46 H 0.115 0.885
47 H 0.123 0.877
48 H 0.119 0.881
49 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.986 -8.037 20.161 23.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.183 4.183
3 C -0.065 4.065
4 N -0.148 5.148
5 C -0.035 4.035
6 C 0.266 3.734
7 O -0.395 6.395
8 N -0.372 5.372
9 C -0.015 4.015
10 C 0.044 3.956
11 H 0.055 0.945
12 C -0.164 4.164
13 C -0.187 4.187
14 C 0.047 3.953
15 N -0.312 5.312
16 C -0.365 4.365
17 H 0.093 0.907
18 C -0.198 4.198
19 N -0.560 5.560
20 Si 0.741 3.259
21 H -0.215 1.215
22 H -0.215 1.215
23 H -0.205 1.205
24 C 0.006 3.994
25 C -0.145 4.145
26 C -0.121 4.121
27 C -0.169 4.169
28 C -0.091 4.091
29 C -0.107 4.107
30 H 0.081 0.919
31 H 0.080 0.920
32 H 0.079 0.921
33 H 0.182 0.818
34 H 0.136 0.864
35 H 0.131 0.869
36 H 0.229 0.771
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.076 0.924
40 H 0.081 0.919
41 H 0.077 0.923
42 H 0.077 0.923
43 H 0.044 0.956
44 H 0.091 0.909
45 H 0.065 0.935
46 H 0.133 0.867
47 H 0.141 0.859
48 H 0.137 0.863
49 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -9.121 -8.142 19.193 22.756
hybrid contribution -0.129 0.785 -0.556 0.971
sum -9.249 -7.357 18.637 22.068
Atomic orbital electron populations
1.20060 0.89529 1.01864 1.01639 1.20215 0.95108 0.90776 1.12218
1.21528 0.81547 0.99178 1.04212 1.43274 1.04966 1.03704 1.62900
1.21619 0.89715 0.95915 0.96260 1.20881 0.81223 0.80167 0.91122
1.90798 1.55806 1.47728 1.45197 1.46120 1.31977 1.48107 1.11003
1.22288 0.98135 1.01005 0.80105 1.21126 0.90998 0.94376 0.89116
0.94536 1.22648 0.96284 0.99612 0.97851 1.23047 0.96404 0.99967
0.99294 1.21464 0.85478 0.97644 0.90720 1.44491 1.16447 1.61887
1.08408 1.18964 1.10110 1.20752 0.86644 0.90686 1.24927 0.98463
0.99457 0.96906 1.69931 1.27657 1.43122 1.15290 0.86146 0.79688
0.79097 0.80996 1.21466 1.21514 1.20516 1.18167 0.95497 0.82555
1.03141 1.20012 0.96523 0.92316 1.05617 1.20764 0.96968 0.94061
1.00305 1.20579 0.92483 0.99312 1.04560 1.20203 0.98901 0.90862
0.99112 1.19059 0.91835 0.93205 1.06598 0.91943 0.92032 0.92060
0.81758 0.86386 0.86912 0.77084 0.91634 0.91439 0.92367 0.91892
0.92303 0.92279 0.95593 0.90909 0.93523 0.86673 0.85939 0.86263
0.86354
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.67 10.41 36.01 0.37 -0.29 16
2 C -0.18 -2.16 6.32 -102.71 -0.65 -2.80 16
3 C 0.06 0.70 11.19 -16.74 -0.19 0.52 16
4 N -0.47 -5.87 2.27 -115.71 -0.26 -6.13 16
5 C 0.09 0.90 6.48 -5.19 -0.03 0.87 16
6 C 0.48 7.01 7.90 -10.98 -0.09 6.93 16
7 O -0.52 -10.49 16.42 5.56 0.09 -10.40 16
8 N -0.72 -9.78 5.36 -60.30 -0.32 -10.10 16
9 C 0.11 2.05 5.10 -4.04 -0.02 2.03 16
10 C 0.15 2.89 3.19 -66.95 -0.21 2.67 16
11 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
12 C -0.13 -1.99 6.22 -24.77 -0.15 -2.15 16
13 C -0.15 -2.64 7.09 -24.45 -0.17 -2.81 16
14 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16
15 N -0.59 -14.33 3.13 -162.57 -0.51 -14.84 16
16 C -0.24 -6.40 9.72 -15.06 -0.15 -6.55 16
17 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16
18 C 0.00 0.00 5.47 -17.43 -0.10 -0.09 16
19 N -0.91 -26.48 10.58 55.49 0.59 -25.89 16
20 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16
21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 C 0.11 1.57 6.80 -83.99 -0.57 0.99 16
25 C -0.12 -1.59 10.00 -39.43 -0.39 -1.99 16
26 C -0.10 -1.16 10.01 -39.54 -0.40 -1.56 16
27 C -0.15 -1.66 9.97 -39.94 -0.40 -2.05 16
28 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16
29 C -0.10 -1.40 6.35 -105.14 -0.67 -2.07 16
30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16
34 H 0.12 0.76 8.12 -51.93 -0.42 0.34 16
35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.40 3.89 8.40 -40.82 -0.34 3.55 16
37 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16
38 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16
39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16
41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
43 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16
44 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16
45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
46 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16
47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16
48 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16
49 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16
LS Contribution 403.04 15.07 6.07 6.07
Total: -1.00 -34.98 403.04 -11.40 -46.38
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: -7.81 Total: 3.53 kcal
Atomic # 6 Polarization: -1.38 SS G_CDS: -4.22 Total: -5.61 kcal
Atomic # 7 Polarization: -56.46 SS G_CDS: -0.51 Total: -56.97 kcal
Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -34.98 -11.40 -46.38 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713515824.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.530 kcal
(2) G-P(sol) polarization free energy of solvation -34.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.550 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.384 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds