Wall clock time and date at job start Sat Apr 11 2020 06:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34236 * 126.50495 * 2 1
4 4 N 1.36823 * 109.92981 * 179.71416 * 3 2 1
5 5 C 1.46498 * 125.06473 * 180.28666 * 4 3 2
6 6 C 1.50700 * 109.47141 * 264.97630 * 5 4 3
7 7 O 1.21280 * 120.00033 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00342 * 180.02562 * 6 5 4
9 9 C 1.46495 * 120.00039 * 179.97438 * 8 6 5
10 10 C 1.53003 * 109.46917 * 185.11087 * 9 8 6
11 11 H 1.08999 * 109.87568 * 305.51437 * 10 9 8
12 12 C 1.54320 * 109.88414 * 66.53295 * 10 9 8
13 13 C 1.55400 * 102.83442 * 141.51905 * 12 10 9
14 14 C 1.54912 * 101.66264 * 324.66190 * 13 12 10
15 15 N 1.47025 * 109.88567 * 184.49950 * 10 9 8
16 16 C 1.36940 * 125.64874 * 61.60168 * 15 10 9
17 17 H 1.07997 * 119.99646 * 14.81745 * 16 15 10
18 18 C 1.38811 * 120.00036 * 194.81746 * 16 15 10
19 19 N 1.31611 * 120.00073 * 359.97438 * 18 16 15
20 20 Si 1.86801 * 119.99658 * 180.02562 * 18 16 15
21 21 H 1.48496 * 109.47381 * 89.99798 * 20 18 16
22 22 H 1.48508 * 109.46829 * 209.99965 * 20 18 16
23 23 H 1.48497 * 109.47035 * 329.99516 * 20 18 16
24 24 C 1.37685 * 109.87716 * 0.26264 * 4 3 2
25 25 C 1.39126 * 133.51567 * 179.97438 * 24 4 3
26 26 C 1.37748 * 119.78513 * 179.97438 * 25 24 4
27 27 C 1.38831 * 120.66443 * 0.04128 * 26 25 24
28 28 C 1.36626 * 120.52586 * 359.96163 * 27 26 25
29 29 C 1.39628 * 119.76626 * 0.02562 * 28 27 26
30 30 H 1.09007 * 109.46962 * 90.02414 * 1 2 3
31 31 H 1.08998 * 109.47624 * 210.02381 * 1 2 3
32 32 H 1.08997 * 109.46793 * 330.03240 * 1 2 3
33 33 H 1.08000 * 125.03093 * 359.97428 * 3 2 1
34 34 H 1.09002 * 109.47008 * 24.97090 * 5 4 3
35 35 H 1.08998 * 109.47473 * 144.97557 * 5 4 3
36 36 H 0.97004 * 119.99766 * 359.97438 * 8 6 5
37 37 H 1.08997 * 109.47168 * 305.10999 * 9 8 6
38 38 H 1.08996 * 109.47241 * 65.11417 * 9 8 6
39 39 H 1.09005 * 110.72014 * 259.97448 * 12 10 9
40 40 H 1.09001 * 110.72067 * 23.24541 * 12 10 9
41 41 H 1.08998 * 111.03670 * 206.53253 * 13 12 10
42 42 H 1.08994 * 110.89273 * 82.72620 * 13 12 10
43 43 H 1.09005 * 110.36759 * 278.08876 * 14 13 12
44 44 H 1.09001 * 110.46107 * 155.80813 * 14 13 12
45 45 H 0.97006 * 120.00157 * 179.97438 * 19 18 16
46 46 H 1.08005 * 120.10630 * 359.97438 * 25 24 4
47 47 H 1.07994 * 119.66667 * 180.02562 * 26 25 24
48 48 H 1.07998 * 119.73301 * 179.97438 * 27 26 25
49 49 H 1.08006 * 120.11336 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3056 1.0790 0.0000
4 7 3.6170 0.6887 0.0064
5 6 4.7657 1.5979 0.0143
6 6 5.2444 1.8146 -1.3981
7 8 4.6819 1.2636 -2.3204
8 7 6.2985 2.6201 -1.6362
9 6 6.7642 2.8304 -3.0092
10 6 8.0395 3.6756 -2.9913
11 1 7.8633 4.6005 -2.4421
12 6 9.1857 2.8823 -2.3292
13 6 10.4184 3.2724 -3.1914
14 6 9.7878 3.3971 -4.6009
15 7 8.4552 3.9828 -4.3677
16 6 7.7250 4.6943 -5.2819
17 1 6.8788 5.2818 -4.9576
18 6 8.0725 4.6604 -6.6254
19 7 9.1040 3.9448 -7.0205
20 14 7.0768 5.6316 -7.8724
21 1 7.6527 6.9930 -8.0135
22 1 7.1167 4.9387 -9.1853
23 1 5.6696 5.7348 -7.4098
24 6 3.6963 -0.6859 0.0049
25 6 4.7587 -1.5841 0.0088
26 6 4.5094 -2.9388 0.0062
27 6 3.2068 -3.4191 -0.0011
28 6 2.1486 -2.5548 -0.0051
29 6 2.3784 -1.1776 -0.0024
30 1 -0.3633 -0.0004 -1.0277
31 1 -0.3634 -0.8897 0.5142
32 1 -0.3633 0.8903 0.5133
33 1 1.9635 2.1034 -0.0004
34 1 4.4700 2.5531 0.4483
35 1 5.5696 1.1624 0.6077
36 1 6.7487 3.0606 -0.8985
37 1 6.9735 1.8667 -3.4734
38 1 5.9930 3.3484 -3.5791
39 1 9.3223 3.1938 -1.2936
40 1 8.9975 1.8103 -2.3889
41 1 11.1749 2.4880 -3.1699
42 1 10.8357 4.2247 -2.8645
43 1 9.6947 2.4143 -5.0631
44 1 10.3870 4.0559 -5.2294
45 1 9.3466 3.9208 -7.9594
46 1 5.7756 -1.2204 0.0138
47 1 5.3355 -3.6344 0.0097
48 1 3.0286 -4.4842 -0.0035
49 1 1.1379 -2.9357 -0.0113
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713515824.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:21
Heat of formation + Delta-G solvation = 28.185564 kcal
Electronic energy + Delta-G solvation = -29156.746811 eV
Core-core repulsion = 25276.889778 eV
Total energy + Delta-G solvation = -3879.857032 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.38514 -40.70207 -39.27951 -37.86897 -35.81649 -34.70784 -34.42729 -31.80868
-31.32984 -30.82786 -30.33176 -29.16936 -26.88769 -26.37824 -25.15346 -23.60621
-22.57298 -22.07043 -21.54159 -21.14021 -20.43915 -19.00040 -18.20559 -18.02577
-17.51450 -17.14465 -16.54293 -16.48461 -16.30732 -15.94732 -15.75148 -15.35234
-15.02182 -14.80078 -14.64215 -14.49828 -14.03034 -13.95256 -13.69418 -13.63512
-13.61088 -13.43525 -13.07631 -12.94956 -12.92059 -12.90073 -12.67606 -12.46850
-12.22530 -12.06692 -11.90852 -11.75503 -11.67939 -11.52092 -11.42117 -11.09438
-10.70914 -10.39409 -10.14690 -9.08561 -8.89128 -8.44816 -7.92179 -5.29759
0.22435 0.69823 1.40938 1.43514 1.50462 1.51348 1.55350 1.86514
2.26037 2.47304 3.01021 3.27870 3.59057 3.73190 3.76335 3.83981
3.91619 3.95017 3.96756 4.10456 4.15558 4.24901 4.28767 4.42340
4.46848 4.48304 4.52043 4.66208 4.70068 4.86550 4.89464 4.93506
4.94680 4.97736 5.01894 5.12334 5.19025 5.20041 5.31798 5.32220
5.44060 5.54575 5.59733 5.63709 5.71231 5.75511 5.87183 5.91250
6.19954 6.31824 6.32219 6.56424 7.05590 7.21217 7.73197 8.38717
9.18799
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.013842 B = 0.002487 C = 0.002320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2022.306249 B =11254.288388 C =12067.838302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.195 4.195
3 C 0.049 3.951
4 N -0.473 5.473
5 C 0.099 3.901
6 C 0.484 3.516
7 O -0.584 6.584
8 N -0.700 5.700
9 C 0.131 3.869
10 C 0.149 3.851
11 H 0.057 0.943
12 C -0.111 4.111
13 C -0.134 4.134
14 C 0.172 3.828
15 N -0.612 5.612
16 C -0.240 4.240
17 H 0.077 0.923
18 C -0.061 4.061
19 N -0.946 5.946
20 Si 0.971 3.029
21 H -0.280 1.280
22 H -0.296 1.296
23 H -0.273 1.273
24 C 0.084 3.916
25 C -0.144 4.144
26 C -0.108 4.108
27 C -0.155 4.155
28 C -0.085 4.085
29 C -0.133 4.133
30 H 0.058 0.942
31 H 0.067 0.933
32 H 0.079 0.921
33 H 0.192 0.808
34 H 0.162 0.838
35 H 0.145 0.855
36 H 0.420 0.580
37 H 0.030 0.970
38 H 0.029 0.971
39 H 0.110 0.890
40 H 0.062 0.938
41 H 0.081 0.919
42 H 0.072 0.928
43 H -0.012 1.012
44 H 0.035 0.965
45 H 0.248 0.752
46 H 0.123 0.877
47 H 0.145 0.855
48 H 0.145 0.855
49 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.303 -7.570 23.532 26.413
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.202 4.202
3 C -0.075 4.075
4 N -0.156 5.156
5 C -0.026 4.026
6 C 0.269 3.731
7 O -0.463 6.463
8 N -0.354 5.354
9 C 0.005 3.995
10 C 0.041 3.959
11 H 0.074 0.926
12 C -0.149 4.149
13 C -0.172 4.172
14 C 0.047 3.953
15 N -0.336 5.336
16 C -0.369 4.369
17 H 0.095 0.905
18 C -0.254 4.254
19 N -0.594 5.594
20 Si 0.799 3.201
21 H -0.206 1.206
22 H -0.223 1.223
23 H -0.198 1.198
24 C -0.021 4.021
25 C -0.164 4.164
26 C -0.128 4.128
27 C -0.174 4.174
28 C -0.104 4.104
29 C -0.137 4.137
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.098 0.902
33 H 0.209 0.791
34 H 0.180 0.820
35 H 0.163 0.837
36 H 0.258 0.742
37 H 0.048 0.952
38 H 0.048 0.952
39 H 0.129 0.871
40 H 0.080 0.920
41 H 0.100 0.900
42 H 0.091 0.909
43 H 0.006 0.994
44 H 0.054 0.946
45 H 0.057 0.943
46 H 0.141 0.859
47 H 0.163 0.837
48 H 0.163 0.837
49 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -9.433 -7.650 22.653 25.704
hybrid contribution -0.063 0.588 -1.565 1.673
sum -9.496 -7.062 21.088 24.182
Atomic orbital electron populations
1.20094 0.87798 1.03156 1.01711 1.20668 0.96552 0.90615 1.12351
1.22071 0.81456 1.00393 1.03621 1.43485 1.05805 1.03558 1.62725
1.21862 0.90100 0.97911 0.92769 1.21792 0.80120 0.78517 0.92651
1.90782 1.57728 1.50080 1.47709 1.45765 1.31994 1.48108 1.09528
1.21648 0.97068 0.98468 0.82355 1.21364 0.92155 0.95607 0.86741
0.92552 1.22646 0.93261 0.99150 0.99838 1.22910 0.97406 1.01640
0.95249 1.21273 0.85529 0.94588 0.93870 1.44764 1.17048 1.61727
1.10055 1.19288 1.09718 1.20389 0.87488 0.90506 1.25698 0.99751
1.01168 0.98823 1.70137 1.29266 1.45055 1.14902 0.85196 0.78593
0.77940 0.78349 1.20643 1.22280 1.19838 1.18526 0.96038 0.83612
1.03944 1.20280 0.96834 0.92963 1.06343 1.21138 0.98006 0.94134
0.99472 1.20943 0.92201 1.00610 1.03632 1.20530 1.00151 0.90653
0.99017 1.19535 0.92497 0.94375 1.07342 0.92367 0.91361 0.90187
0.79115 0.82027 0.83727 0.74183 0.95195 0.95216 0.87148 0.91962
0.90044 0.90916 0.99379 0.94612 0.94320 0.85865 0.83729 0.83745
0.84713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.20 10.41 71.24 0.74 -0.46 16
2 C -0.20 -4.63 6.32 -18.63 -0.12 -4.75 16
3 C 0.05 1.07 11.19 83.00 0.93 2.00 16
4 N -0.47 -11.16 2.27 -520.01 -1.18 -12.34 16
5 C 0.10 1.63 6.48 85.63 0.56 2.18 16
6 C 0.48 13.30 7.90 87.66 0.69 14.00 16
7 O -0.58 -23.92 16.42 -3.03 -0.05 -23.97 16
8 N -0.70 -17.49 5.36 -463.07 -2.48 -19.97 16
9 C 0.13 4.91 5.10 86.38 0.44 5.36 16
10 C 0.15 5.40 3.19 45.34 0.14 5.55 16
11 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
12 C -0.11 -3.14 6.22 31.87 0.20 -2.94 16
13 C -0.13 -4.45 7.09 32.07 0.23 -4.22 16
14 C 0.17 8.32 5.42 86.86 0.47 8.79 16
15 N -0.61 -30.26 3.13 -668.24 -2.09 -32.35 16
16 C -0.24 -13.29 9.72 84.03 0.82 -12.47 16
17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16
18 C -0.06 -3.48 5.47 84.86 0.46 -3.01 16
19 N -0.95 -57.39 10.58 21.65 0.23 -57.16 16
20 Si 0.97 46.55 29.55 68.60 2.03 48.57 16
21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16
23 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
24 C 0.08 2.31 6.80 39.03 0.27 2.58 16
25 C -0.14 -3.59 10.00 22.37 0.22 -3.36 16
26 C -0.11 -2.37 10.01 22.30 0.22 -2.14 16
27 C -0.15 -3.25 9.97 22.03 0.22 -3.03 16
28 C -0.09 -1.98 10.05 22.23 0.22 -1.76 16
29 C -0.13 -3.60 6.35 -20.20 -0.13 -3.72 16
30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16
31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16
34 H 0.16 1.28 8.12 -2.39 -0.02 1.26 16
35 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.42 6.43 8.40 -92.71 -0.78 5.65 16
37 H 0.03 1.32 8.03 -2.39 -0.02 1.31 16
38 H 0.03 1.32 7.86 -2.39 -0.02 1.31 16
39 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16
40 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16
41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16
43 H -0.01 -0.65 8.06 -2.38 -0.02 -0.67 16
44 H 0.04 1.95 6.94 -2.39 -0.02 1.93 16
45 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16
46 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16
47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16
48 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16
49 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16
Total: -1.00 -83.68 403.04 3.21 -80.47
By element:
Atomic # 1 Polarization: 18.02 SS G_CDS: 0.16 Total: 18.18 kcal
Atomic # 6 Polarization: -8.02 SS G_CDS: 6.59 Total: -1.43 kcal
Atomic # 7 Polarization: -116.30 SS G_CDS: -5.52 Total: -121.82 kcal
Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal
Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal
Total: -83.68 3.21 -80.47 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713515824.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.652 kcal
(2) G-P(sol) polarization free energy of solvation -83.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds