Wall clock time and date at job start Sat Apr 11 2020 06:24:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09000 * 109.60528 * 2 1
4 4 C 1.53378 * 109.60713 * 239.66610 * 2 1 3
5 5 C 1.53049 * 107.96231 * 171.78455 * 4 2 1
6 6 C 1.50924 * 109.58054 * 47.30685 * 5 4 2
7 7 C 1.38617 * 118.10094 * 164.58220 * 6 5 4
8 8 C 1.38054 * 120.49084 * 179.64741 * 7 6 5
9 9 C 1.38308 * 119.88557 * 0.02562 * 8 7 6
10 10 C 1.37813 * 119.95393 * 0.13530 * 9 8 7
11 11 C 1.38376 * 122.03639 * 344.46972 * 6 5 4
12 12 N 1.39400 * 122.96471 * 0.51162 * 11 6 5
13 13 C 1.46902 * 110.99736 * 105.57222 * 12 11 6
14 14 C 1.50704 * 109.47092 * 147.00507 * 13 12 11
15 15 O 1.21278 * 119.99586 * 353.20550 * 14 13 12
16 16 N 1.34770 * 120.00092 * 173.20740 * 14 13 12
17 17 C 1.46504 * 120.00174 * 180.02562 * 16 14 13
18 18 C 1.50697 * 109.47057 * 89.99629 * 17 16 14
19 19 H 1.07995 * 120.00110 * 0.02562 * 18 17 16
20 20 C 1.37880 * 119.99584 * 179.97438 * 18 17 16
21 21 N 1.31508 * 120.00088 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 119.99927 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47152 * 90.00177 * 22 20 18
24 24 H 1.48493 * 109.47252 * 210.00394 * 22 20 18
25 25 H 1.48506 * 109.46989 * 330.00613 * 22 20 18
26 26 C 1.46504 * 120.00123 * 359.97438 * 16 14 13
27 27 C 1.53002 * 109.47233 * 90.00072 * 26 16 14
28 28 C 1.47201 * 109.46978 * 180.02562 * 27 26 16
29 29 N 7.52113 * 84.20493 * 166.36607 * 2 1 3
30 30 H 1.09000 * 109.46949 * 184.37507 * 1 2 3
31 31 H 1.08997 * 109.46987 * 304.37261 * 1 2 3
32 32 H 1.09002 * 109.46417 * 64.37673 * 1 2 3
33 33 H 1.08997 * 109.77635 * 291.41786 * 4 2 1
34 34 H 1.08999 * 109.77227 * 52.15967 * 4 2 1
35 35 H 1.09001 * 109.43872 * 167.40038 * 5 4 2
36 36 H 1.09000 * 109.44604 * 287.29766 * 5 4 2
37 37 H 1.08000 * 119.75445 * 359.62568 * 7 6 5
38 38 H 1.07996 * 120.05578 * 179.97438 * 8 7 6
39 39 H 1.07995 * 120.02400 * 180.10402 * 9 8 7
40 40 H 1.08002 * 119.78633 * 180.02562 * 10 9 8
41 41 H 1.09003 * 109.47731 * 267.00469 * 13 12 11
42 42 H 1.09005 * 109.46882 * 27.00557 * 13 12 11
43 43 H 1.09004 * 109.47212 * 209.99587 * 17 16 14
44 44 H 1.08997 * 109.46493 * 329.99612 * 17 16 14
45 45 H 0.97005 * 120.00061 * 179.97438 * 21 20 18
46 46 H 1.09000 * 109.47137 * 210.00147 * 26 16 14
47 47 H 1.09005 * 109.46789 * 329.99969 * 26 16 14
48 48 H 1.09000 * 109.47120 * 300.00085 * 27 26 16
49 49 H 1.08996 * 109.46743 * 60.00080 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8958 1.0268 0.0000
4 6 2.0448 -0.7297 -1.2470
5 6 3.5605 -0.5305 -1.3185
6 6 4.1716 -0.8092 0.0330
7 6 5.5425 -1.0021 0.1025
8 6 6.1541 -1.2530 1.3145
9 6 5.3957 -1.3136 2.4696
10 6 4.0318 -1.1262 2.4079
11 6 3.4076 -0.8732 1.1850
12 7 2.0247 -0.6976 1.1886
13 6 1.3317 -1.9797 1.3729
14 6 0.0592 -1.7560 2.1487
15 8 -0.1806 -0.6639 2.6183
16 7 -0.8122 -2.7696 2.3207
17 6 -2.0495 -2.5520 3.0745
18 6 -3.1396 -2.1085 2.1333
19 1 -2.9317 -1.9999 1.0791
20 6 -4.4026 -1.8422 2.6179
21 7 -4.6558 -1.9749 3.9016
22 14 -5.7538 -1.2917 1.4514
23 1 -6.4743 -2.4816 0.9317
24 1 -6.7067 -0.4138 2.1769
25 1 -5.1544 -0.5420 0.3183
26 6 -0.5227 -4.0888 1.7530
27 6 0.2549 -4.9234 2.7727
28 6 0.5463 -6.2487 2.2020
29 7 0.7707 -7.2718 1.7638
30 1 -0.3633 -1.0247 0.0784
31 1 -0.3633 0.5802 0.8482
32 1 -0.3632 0.4444 -0.9267
33 1 1.8157 -1.7928 -1.1731
34 1 1.5757 -0.3126 -2.1382
35 1 3.9818 -1.2134 -2.0563
36 1 3.7782 0.4970 -1.6100
37 1 6.1366 -0.9560 -0.7982
38 1 7.2226 -1.4026 1.3605
39 1 5.8720 -1.5081 3.4191
40 1 3.4423 -1.1737 3.3116
41 1 1.0930 -2.4071 0.3990
42 1 1.9766 -2.6655 1.9225
43 1 -2.3460 -3.4808 3.5620
44 1 -1.8849 -1.7823 3.8284
45 1 -5.5443 -1.7872 4.2426
46 1 -1.4580 -4.5925 1.5089
47 1 0.0740 -3.9720 0.8483
48 1 1.1902 -4.4197 3.0169
49 1 -0.3418 -5.0401 3.6773
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000053065559.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:42
Heat of formation + Delta-G solvation = 30.708415 kcal
Electronic energy + Delta-G solvation = -30600.794507 eV
Core-core repulsion = 26721.046874 eV
Total energy + Delta-G solvation = -3879.747633 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.02271 -39.09265 -37.26143 -36.74433 -35.17076 -33.93984 -32.87482 -31.67852
-30.83231 -30.09644 -28.69728 -27.46455 -26.28507 -24.01988 -23.68064 -22.85682
-22.02818 -21.87310 -19.50028 -18.34318 -17.59558 -17.30359 -16.67050 -16.39851
-16.17368 -15.73613 -15.25502 -14.86137 -14.69541 -14.50914 -14.26930 -14.11784
-13.97308 -13.76362 -13.43904 -13.15892 -12.92889 -12.73740 -12.44377 -12.40895
-12.33509 -12.25569 -12.03566 -11.83478 -11.65182 -11.49860 -11.31440 -11.28020
-11.11118 -10.99268 -10.82643 -10.72324 -10.62924 -10.58821 -10.18222 -9.70463
-9.48535 -8.81101 -8.74471 -8.47509 -7.84057 -7.79625 -6.08880 -4.13296
1.27924 1.32684 2.72521 2.80710 3.27223 3.29254 3.35288 3.39465
3.42166 3.69138 3.87416 4.26086 4.41584 4.58944 4.65914 4.74482
4.84713 4.93214 5.01539 5.07417 5.09157 5.14420 5.20971 5.26749
5.30945 5.35981 5.39198 5.46221 5.51749 5.57414 5.66227 5.72865
5.79763 5.81831 5.86442 6.01018 6.02500 6.05651 6.28055 6.32974
6.44070 6.48483 6.70386 6.78238 6.90380 7.05758 7.38005 7.43238
7.47573 7.56654 7.87429 8.17701 8.28705 8.86105 9.04725 9.52307
10.99157
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.010861 B = 0.003736 C = 0.003173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2577.372643 B = 7493.369206 C = 8822.416442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.090 3.910
3 H 0.087 0.913
4 C -0.156 4.156
5 C -0.077 4.077
6 C -0.123 4.123
7 C -0.105 4.105
8 C -0.139 4.139
9 C -0.109 4.109
10 C -0.120 4.120
11 C 0.121 3.879
12 N -0.473 5.473
13 C 0.036 3.964
14 C 0.509 3.491
15 O -0.506 6.506
16 N -0.601 5.601
17 C 0.247 3.753
18 C -0.526 4.526
19 H 0.057 0.943
20 C 0.063 3.937
21 N -0.893 5.893
22 Si 0.894 3.106
23 H -0.281 1.281
24 H -0.286 1.286
25 H -0.274 1.274
26 C 0.117 3.883
27 C -0.051 4.051
28 C 0.217 3.783
29 N -0.445 5.445
30 H 0.058 0.942
31 H 0.088 0.912
32 H 0.055 0.945
33 H 0.067 0.933
34 H 0.078 0.922
35 H 0.074 0.926
36 H 0.076 0.924
37 H 0.117 0.883
38 H 0.118 0.882
39 H 0.122 0.878
40 H 0.128 0.872
41 H 0.074 0.926
42 H 0.094 0.906
43 H 0.033 0.967
44 H 0.047 0.953
45 H 0.263 0.737
46 H 0.094 0.906
47 H 0.071 0.929
48 H 0.105 0.895
49 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.420 0.114 -7.157 19.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.017 4.017
3 H 0.106 0.894
4 C -0.195 4.195
5 C -0.114 4.114
6 C -0.126 4.126
7 C -0.124 4.124
8 C -0.158 4.158
9 C -0.128 4.128
10 C -0.140 4.140
11 C 0.024 3.976
12 N -0.189 5.189
13 C -0.092 4.092
14 C 0.294 3.706
15 O -0.380 6.380
16 N -0.334 5.334
17 C 0.128 3.872
18 C -0.565 4.565
19 H 0.076 0.924
20 C -0.139 4.139
21 N -0.532 5.532
22 Si 0.722 3.278
23 H -0.207 1.207
24 H -0.211 1.211
25 H -0.199 1.199
26 C -0.010 4.010
27 C -0.093 4.093
28 C -0.101 4.101
29 N -0.123 5.123
30 H 0.077 0.923
31 H 0.106 0.894
32 H 0.074 0.926
33 H 0.086 0.914
34 H 0.096 0.904
35 H 0.093 0.907
36 H 0.094 0.906
37 H 0.135 0.865
38 H 0.136 0.864
39 H 0.140 0.860
40 H 0.146 0.854
41 H 0.091 0.909
42 H 0.112 0.888
43 H 0.051 0.949
44 H 0.065 0.935
45 H 0.073 0.927
46 H 0.113 0.887
47 H 0.089 0.911
48 H 0.123 0.877
49 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 18.264 -0.479 -7.005 19.567
hybrid contribution -0.688 0.177 -1.036 1.256
sum 17.576 -0.302 -8.041 19.331
Atomic orbital electron populations
1.22154 0.92472 1.03255 1.03047 1.21774 0.96529 0.97706 0.85718
0.89441 1.22316 0.95544 1.01641 1.00036 1.20546 0.95179 1.02030
0.93657 1.20001 0.94267 1.03785 0.94501 1.20926 0.93582 1.00056
0.97853 1.21004 0.99614 1.02399 0.92795 1.20975 0.93622 0.99849
0.98342 1.21150 0.94541 1.01487 0.96853 1.18550 0.88413 0.98189
0.92477 1.58120 1.01346 1.20009 1.39384 1.22301 0.95876 0.90242
1.00816 1.20065 0.84151 0.84935 0.81412 1.90681 1.75717 1.23403
1.48199 1.48233 1.22387 1.07862 1.54933 1.19319 0.78463 0.97734
0.91651 1.21394 0.94499 1.46033 0.94579 0.92433 1.24900 0.98555
0.95350 0.95103 1.69914 1.21951 1.48978 1.12358 0.86555 0.81679
0.78602 0.80937 1.20730 1.21145 1.19886 1.21299 1.00735 0.84923
0.94005 1.19917 1.03454 0.84919 1.00980 1.29097 0.92900 0.94704
0.93420 1.81184 1.09450 1.12254 1.09385 0.92341 0.89355 0.92598
0.91450 0.90366 0.90704 0.90588 0.86467 0.86389 0.86040 0.85410
0.90853 0.88754 0.94876 0.93535 0.92703 0.88720 0.91054 0.87705
0.86365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.33 7.78 37.16 0.29 -2.04 16
2 C 0.09 1.19 2.80 -67.77 -0.19 1.00 16
3 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16
4 C -0.16 -1.64 5.29 -26.51 -0.14 -1.78 16
5 C -0.08 -0.73 5.82 -27.75 -0.16 -0.89 16
6 C -0.12 -1.37 5.75 -104.32 -0.60 -1.97 16
7 C -0.11 -1.04 9.63 -39.51 -0.38 -1.42 16
8 C -0.14 -1.33 10.05 -39.62 -0.40 -1.72 16
9 C -0.11 -1.11 10.03 -39.71 -0.40 -1.51 16
10 C -0.12 -1.45 9.16 -39.22 -0.36 -1.81 16
11 C 0.12 1.54 5.03 -83.85 -0.42 1.11 16
12 N -0.47 -6.67 3.85 -165.07 -0.64 -7.31 16
13 C 0.04 0.49 3.58 -4.97 -0.02 0.47 16
14 C 0.51 9.01 5.55 -10.99 -0.06 8.95 16
15 O -0.51 -11.23 13.74 5.56 0.08 -11.15 16
16 N -0.60 -10.55 2.46 -175.05 -0.43 -10.98 16
17 C 0.25 5.68 5.16 -5.19 -0.03 5.65 16
18 C -0.53 -13.62 9.39 -34.44 -0.32 -13.94 16
19 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16
20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
21 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16
22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
26 C 0.12 1.52 5.19 -4.04 -0.02 1.50 16
27 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16
28 C 0.22 2.61 15.43 -20.78 -0.32 2.29 16
29 N -0.45 -6.54 18.53 42.13 0.78 -5.76 16
30 H 0.06 0.96 5.34 -51.93 -0.28 0.68 16
31 H 0.09 1.66 6.58 -51.93 -0.34 1.32 16
32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.07 0.72 6.38 -51.93 -0.33 0.39 16
34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16
38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
40 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16
41 H 0.07 0.90 4.46 -51.93 -0.23 0.67 16
42 H 0.09 1.10 6.56 -51.93 -0.34 0.76 16
43 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16
44 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16
45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
46 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16
47 H 0.07 0.78 6.26 -51.93 -0.32 0.46 16
48 H 0.10 0.90 7.43 -51.93 -0.39 0.51 16
49 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16
LS Contribution 393.57 15.07 5.93 5.93
Total: -1.00 -31.84 393.57 -9.59 -41.43
By element:
Atomic # 1 Polarization: 8.82 SS G_CDS: -7.23 Total: 1.59 kcal
Atomic # 6 Polarization: -1.41 SS G_CDS: -3.81 Total: -5.21 kcal
Atomic # 7 Polarization: -48.92 SS G_CDS: 0.45 Total: -48.46 kcal
Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -31.84 -9.59 -41.43 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000053065559.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.142 kcal
(2) G-P(sol) polarization free energy of solvation -31.839 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.708 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds