Wall clock time and date at job start Sat Apr 11 2020 06:24:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09000 * 109.60528 * 2 1
4 4 C 1.53378 * 109.60713 * 239.66610 * 2 1 3
5 5 C 1.53049 * 107.96231 * 171.78455 * 4 2 1
6 6 C 1.50924 * 109.58054 * 47.30685 * 5 4 2
7 7 C 1.38617 * 118.10094 * 164.58220 * 6 5 4
8 8 C 1.38054 * 120.49084 * 179.64741 * 7 6 5
9 9 C 1.38308 * 119.88557 * 0.02562 * 8 7 6
10 10 C 1.37813 * 119.95393 * 0.13530 * 9 8 7
11 11 C 1.38376 * 122.03639 * 344.46972 * 6 5 4
12 12 N 1.39400 * 122.96471 * 0.51162 * 11 6 5
13 13 C 1.46902 * 110.99736 * 105.57222 * 12 11 6
14 14 C 1.50704 * 109.47092 * 147.00507 * 13 12 11
15 15 O 1.21278 * 119.99586 * 353.20550 * 14 13 12
16 16 N 1.34770 * 120.00092 * 173.20740 * 14 13 12
17 17 C 1.46504 * 120.00174 * 180.02562 * 16 14 13
18 18 C 1.50697 * 109.47057 * 89.99629 * 17 16 14
19 19 H 1.07995 * 120.00110 * 0.02562 * 18 17 16
20 20 C 1.37880 * 119.99584 * 179.97438 * 18 17 16
21 21 N 1.31508 * 120.00088 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 119.99927 * 179.97438 * 20 18 17
23 23 H 1.48497 * 109.47152 * 90.00177 * 22 20 18
24 24 H 1.48493 * 109.47252 * 210.00394 * 22 20 18
25 25 H 1.48506 * 109.46989 * 330.00613 * 22 20 18
26 26 C 1.46504 * 120.00123 * 359.97438 * 16 14 13
27 27 C 1.53002 * 109.47233 * 90.00072 * 26 16 14
28 28 C 1.47201 * 109.46978 * 180.02562 * 27 26 16
29 29 N 7.52113 * 84.20493 * 166.36607 * 2 1 3
30 30 H 1.09000 * 109.46949 * 184.37507 * 1 2 3
31 31 H 1.08997 * 109.46987 * 304.37261 * 1 2 3
32 32 H 1.09002 * 109.46417 * 64.37673 * 1 2 3
33 33 H 1.08997 * 109.77635 * 291.41786 * 4 2 1
34 34 H 1.08999 * 109.77227 * 52.15967 * 4 2 1
35 35 H 1.09001 * 109.43872 * 167.40038 * 5 4 2
36 36 H 1.09000 * 109.44604 * 287.29766 * 5 4 2
37 37 H 1.08000 * 119.75445 * 359.62568 * 7 6 5
38 38 H 1.07996 * 120.05578 * 179.97438 * 8 7 6
39 39 H 1.07995 * 120.02400 * 180.10402 * 9 8 7
40 40 H 1.08002 * 119.78633 * 180.02562 * 10 9 8
41 41 H 1.09003 * 109.47731 * 267.00469 * 13 12 11
42 42 H 1.09005 * 109.46882 * 27.00557 * 13 12 11
43 43 H 1.09004 * 109.47212 * 209.99587 * 17 16 14
44 44 H 1.08997 * 109.46493 * 329.99612 * 17 16 14
45 45 H 0.97005 * 120.00061 * 179.97438 * 21 20 18
46 46 H 1.09000 * 109.47137 * 210.00147 * 26 16 14
47 47 H 1.09005 * 109.46789 * 329.99969 * 26 16 14
48 48 H 1.09000 * 109.47120 * 300.00085 * 27 26 16
49 49 H 1.08996 * 109.46743 * 60.00080 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8958 1.0268 0.0000
4 6 2.0448 -0.7297 -1.2470
5 6 3.5605 -0.5305 -1.3185
6 6 4.1716 -0.8092 0.0330
7 6 5.5425 -1.0021 0.1025
8 6 6.1541 -1.2530 1.3145
9 6 5.3957 -1.3136 2.4696
10 6 4.0318 -1.1262 2.4079
11 6 3.4076 -0.8732 1.1850
12 7 2.0247 -0.6976 1.1886
13 6 1.3317 -1.9797 1.3729
14 6 0.0592 -1.7560 2.1487
15 8 -0.1806 -0.6639 2.6183
16 7 -0.8122 -2.7696 2.3207
17 6 -2.0495 -2.5520 3.0745
18 6 -3.1396 -2.1085 2.1333
19 1 -2.9317 -1.9999 1.0791
20 6 -4.4026 -1.8422 2.6179
21 7 -4.6558 -1.9749 3.9016
22 14 -5.7538 -1.2917 1.4514
23 1 -6.4743 -2.4816 0.9317
24 1 -6.7067 -0.4138 2.1769
25 1 -5.1544 -0.5420 0.3183
26 6 -0.5227 -4.0888 1.7530
27 6 0.2549 -4.9234 2.7727
28 6 0.5463 -6.2487 2.2020
29 7 0.7707 -7.2718 1.7638
30 1 -0.3633 -1.0247 0.0784
31 1 -0.3633 0.5802 0.8482
32 1 -0.3632 0.4444 -0.9267
33 1 1.8157 -1.7928 -1.1731
34 1 1.5757 -0.3126 -2.1382
35 1 3.9818 -1.2134 -2.0563
36 1 3.7782 0.4970 -1.6100
37 1 6.1366 -0.9560 -0.7982
38 1 7.2226 -1.4026 1.3605
39 1 5.8720 -1.5081 3.4191
40 1 3.4423 -1.1737 3.3116
41 1 1.0930 -2.4071 0.3990
42 1 1.9766 -2.6655 1.9225
43 1 -2.3460 -3.4808 3.5620
44 1 -1.8849 -1.7823 3.8284
45 1 -5.5443 -1.7872 4.2426
46 1 -1.4580 -4.5925 1.5089
47 1 0.0740 -3.9720 0.8483
48 1 1.1902 -4.4197 3.0169
49 1 -0.3418 -5.0401 3.6773
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000053065559.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:41
Heat of formation + Delta-G solvation = 13.415016 kcal
Electronic energy + Delta-G solvation = -30601.544406 eV
Core-core repulsion = 26721.046874 eV
Total energy + Delta-G solvation = -3880.497531 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.01466 -40.35425 -38.23137 -37.82887 -36.57549 -34.95556 -34.66255 -32.62280
-32.14786 -31.03596 -29.91657 -28.71629 -27.66751 -25.29945 -24.67227 -24.31369
-22.94404 -22.79490 -20.57875 -19.59798 -18.77423 -18.32213 -18.31083 -17.69599
-17.14728 -17.07149 -16.42160 -16.07425 -15.88641 -15.66514 -15.28632 -15.12872
-15.00043 -14.89387 -14.55055 -14.22989 -14.19942 -13.93141 -13.62422 -13.58779
-13.52616 -13.24511 -13.19226 -13.05604 -12.98352 -12.75133 -12.66000 -12.49210
-12.45729 -12.20975 -12.14146 -12.10827 -11.84239 -11.66409 -11.62253 -11.47370
-10.61630 -10.55373 -10.03344 -9.54607 -9.39414 -8.73957 -8.14594 -6.26076
0.48276 0.53996 1.40291 1.42855 1.51682 1.68860 1.82872 1.95304
2.21081 2.44664 2.79279 2.93240 3.15398 3.18813 3.70785 3.81727
3.85008 3.89145 4.00273 4.04764 4.11910 4.21003 4.26579 4.31221
4.37190 4.45474 4.49029 4.55260 4.63945 4.73054 4.79351 4.83046
4.84480 4.96096 5.01367 5.03480 5.05831 5.15904 5.23825 5.31657
5.38797 5.40959 5.52808 5.62041 5.66463 5.72072 5.88470 5.97043
6.10150 6.17514 6.55031 6.58957 6.80914 6.86952 7.39650 7.63713
8.91974
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.010861 B = 0.003736 C = 0.003173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2577.372643 B = 7493.369206 C = 8822.416442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.092 3.908
3 H 0.081 0.919
4 C -0.149 4.149
5 C -0.073 4.073
6 C -0.130 4.130
7 C -0.107 4.107
8 C -0.138 4.138
9 C -0.112 4.112
10 C -0.138 4.138
11 C 0.099 3.901
12 N -0.495 5.495
13 C 0.051 3.949
14 C 0.507 3.493
15 O -0.560 6.560
16 N -0.601 5.601
17 C 0.263 3.737
18 C -0.533 4.533
19 H 0.054 0.946
20 C 0.011 3.989
21 N -0.927 5.927
22 Si 0.954 3.046
23 H -0.268 1.268
24 H -0.287 1.287
25 H -0.272 1.272
26 C 0.113 3.887
27 C -0.039 4.039
28 C 0.245 3.755
29 N -0.487 5.487
30 H 0.044 0.956
31 H 0.044 0.956
32 H 0.072 0.928
33 H 0.067 0.933
34 H 0.092 0.908
35 H 0.096 0.904
36 H 0.084 0.916
37 H 0.142 0.858
38 H 0.144 0.856
39 H 0.139 0.861
40 H 0.114 0.886
41 H 0.091 0.909
42 H 0.117 0.883
43 H 0.032 0.968
44 H 0.003 0.997
45 H 0.264 0.736
46 H 0.086 0.914
47 H 0.099 0.901
48 H 0.131 0.869
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.869 -0.670 -9.482 22.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.015 4.015
3 H 0.100 0.900
4 C -0.187 4.187
5 C -0.110 4.110
6 C -0.133 4.133
7 C -0.125 4.125
8 C -0.156 4.156
9 C -0.130 4.130
10 C -0.158 4.158
11 C 0.003 3.997
12 N -0.211 5.211
13 C -0.077 4.077
14 C 0.295 3.705
15 O -0.437 6.437
16 N -0.333 5.333
17 C 0.142 3.858
18 C -0.571 4.571
19 H 0.072 0.928
20 C -0.187 4.187
21 N -0.567 5.567
22 Si 0.780 3.220
23 H -0.194 1.194
24 H -0.213 1.213
25 H -0.197 1.197
26 C -0.012 4.012
27 C -0.080 4.080
28 C -0.072 4.072
29 N -0.165 5.165
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.091 0.909
33 H 0.086 0.914
34 H 0.111 0.889
35 H 0.114 0.886
36 H 0.102 0.898
37 H 0.160 0.840
38 H 0.162 0.838
39 H 0.157 0.843
40 H 0.132 0.868
41 H 0.109 0.891
42 H 0.135 0.865
43 H 0.050 0.950
44 H 0.021 0.979
45 H 0.073 0.927
46 H 0.104 0.896
47 H 0.117 0.883
48 H 0.149 0.851
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 20.745 -1.302 -9.358 22.795
hybrid contribution -1.385 0.474 -0.269 1.488
sum 19.360 -0.828 -9.627 21.637
Atomic orbital electron populations
1.22021 0.94528 1.01600 1.01943 1.21700 0.94633 0.97996 0.87186
0.90049 1.22243 0.96530 1.01166 0.98787 1.20578 0.94062 1.03095
0.93269 1.20227 0.94917 1.03480 0.94645 1.21252 0.93202 0.99042
0.99029 1.21364 1.00912 1.00998 0.92323 1.21219 0.92885 0.99201
0.99695 1.21188 0.95487 1.02814 0.96332 1.18637 0.87588 1.00019
0.93451 1.57999 1.02536 1.20319 1.40269 1.22173 0.93675 0.90907
1.00967 1.20856 0.85117 0.83866 0.80652 1.90663 1.77081 1.25591
1.50370 1.48083 1.20772 1.09951 1.54518 1.18754 0.80214 0.95981
0.90811 1.21721 0.95342 1.45295 0.94780 0.92756 1.25688 1.00931
0.95643 0.96481 1.70026 1.22434 1.50295 1.13945 0.85614 0.79000
0.78451 0.78959 1.19379 1.21271 1.19712 1.21497 1.01349 0.82758
0.95552 1.19840 1.04371 0.83821 0.99982 1.29106 0.91542 0.94327
0.92240 1.81223 1.11069 1.13516 1.10663 0.93655 0.93672 0.90904
0.91397 0.88932 0.88605 0.89762 0.84001 0.83816 0.84275 0.86773
0.89107 0.86517 0.95013 0.97930 0.92725 0.89570 0.88283 0.85088
0.85976
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.49 7.78 71.98 0.56 -3.93 16
2 C 0.09 2.38 2.80 45.13 0.13 2.50 16
3 H 0.08 2.16 8.11 -2.39 -0.02 2.14 16
4 C -0.15 -2.73 5.29 30.74 0.16 -2.57 16
5 C -0.07 -1.14 5.82 29.94 0.17 -0.97 16
6 C -0.13 -2.55 5.75 -19.67 -0.11 -2.66 16
7 C -0.11 -1.72 9.63 22.32 0.21 -1.50 16
8 C -0.14 -2.14 10.05 22.24 0.22 -1.91 16
9 C -0.11 -2.01 10.03 22.19 0.22 -1.79 16
10 C -0.14 -3.19 9.16 22.50 0.21 -2.99 16
11 C 0.10 2.39 5.03 38.30 0.19 2.59 16
12 N -0.50 -13.80 3.85 -676.17 -2.60 -16.41 16
13 C 0.05 1.34 3.58 85.56 0.31 1.64 16
14 C 0.51 18.37 5.55 87.66 0.49 18.86 16
15 O -0.56 -26.34 13.74 -3.02 -0.04 -26.38 16
16 N -0.60 -21.41 2.46 -826.13 -2.03 -23.44 16
17 C 0.26 12.61 5.16 85.63 0.44 13.05 16
18 C -0.53 -28.33 9.39 25.60 0.24 -28.09 16
19 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16
20 C 0.01 0.63 5.46 84.66 0.46 1.09 16
21 N -0.93 -53.72 13.29 21.45 0.28 -53.44 16
22 Si 0.95 43.44 29.54 68.60 2.03 45.47 16
23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16
24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16
25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
26 C 0.11 2.80 5.19 86.38 0.45 3.25 16
27 C -0.04 -0.73 6.03 28.79 0.17 -0.56 16
28 C 0.25 5.43 15.43 89.45 1.38 6.81 16
29 N -0.49 -13.57 18.53 20.00 0.37 -13.20 16
30 H 0.04 1.50 5.34 -2.39 -0.01 1.48 16
31 H 0.04 1.80 6.58 -2.39 -0.02 1.78 16
32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
33 H 0.07 1.25 6.38 -2.39 -0.02 1.23 16
34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16
38 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16
39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16
40 H 0.11 2.85 8.06 -2.91 -0.02 2.82 16
41 H 0.09 2.04 4.46 -2.39 -0.01 2.03 16
42 H 0.12 2.49 6.56 -2.38 -0.02 2.48 16
43 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16
44 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16
45 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16
46 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16
47 H 0.10 1.92 6.26 -2.38 -0.01 1.91 16
48 H 0.13 1.87 7.43 -2.39 -0.02 1.86 16
49 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16
Total: -1.00 -73.11 393.57 4.88 -68.23
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: 0.96 Total: 16.33 kcal
Atomic # 6 Polarization: -3.08 SS G_CDS: 5.91 Total: 2.83 kcal
Atomic # 7 Polarization: -102.51 SS G_CDS: -3.98 Total: -106.48 kcal
Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal
Total: -73.11 4.88 -68.23 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000053065559.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.648 kcal
(2) G-P(sol) polarization free energy of solvation -73.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds