Wall clock time and date at job start Sat Apr 11 2020 06:24:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 109.47206 * 2 1
4 4 N 1.46893 * 109.47185 * 239.99687 * 2 1 3
5 5 C 1.46903 * 110.99931 * 84.99784 * 4 2 1
6 6 C 1.52998 * 109.47185 * 179.97438 * 5 4 2
7 7 H 1.09001 * 109.47559 * 305.00218 * 6 5 4
8 8 C 1.47200 * 109.46952 * 65.00631 * 6 5 4
9 9 N 4.90942 * 82.27704 * 240.86407 * 2 1 3
10 10 C 1.53006 * 109.46850 * 185.00079 * 6 5 4
11 11 C 1.50705 * 109.47037 * 175.00080 * 10 6 5
12 12 H 1.08000 * 119.99692 * 0.02562 * 11 10 6
13 13 C 1.37871 * 120.00203 * 180.02562 * 11 10 6
14 14 N 1.31512 * 120.00201 * 180.02562 * 13 11 10
15 15 Si 1.86798 * 119.99979 * 359.97438 * 13 11 10
16 16 H 1.48505 * 109.46989 * 90.00152 * 15 13 11
17 17 H 1.48501 * 109.47457 * 210.00164 * 15 13 11
18 18 H 1.48504 * 109.47196 * 330.00648 * 15 13 11
19 19 C 1.50705 * 109.47140 * 120.00125 * 2 1 3
20 20 O 1.21282 * 120.00248 * 110.67278 * 19 2 1
21 21 N 1.34783 * 119.99674 * 290.67784 * 19 2 1
22 22 C 1.39830 * 124.98141 * 355.97792 * 21 19 2
23 23 C 1.39631 * 129.33272 * 0.03556 * 22 21 19
24 24 C 1.37840 * 120.28577 * 179.97438 * 23 22 21
25 25 C 1.38302 * 120.21899 * 0.02562 * 24 23 22
26 26 C 1.38225 * 119.82831 * 359.97438 * 25 24 23
27 27 C 1.38177 * 120.15114 * 359.97438 * 26 25 24
28 28 C 1.51221 * 130.97470 * 179.97438 * 27 26 25
29 29 C 1.46538 * 124.97535 * 176.04941 * 21 19 2
30 30 H 1.08996 * 110.36946 * 298.94737 * 29 21 19
31 31 C 1.52996 * 110.30638 * 61.04525 * 29 21 19
32 32 H 1.08999 * 109.46948 * 53.43104 * 1 2 3
33 33 H 1.09002 * 109.47321 * 173.43027 * 1 2 3
34 34 H 1.09003 * 109.46858 * 293.42466 * 1 2 3
35 35 H 1.00897 * 111.00694 * 208.95287 * 4 2 1
36 36 H 1.08992 * 109.47396 * 300.00434 * 5 4 2
37 37 H 1.09006 * 109.46824 * 59.99981 * 5 4 2
38 38 H 1.08995 * 109.47520 * 295.00052 * 10 6 5
39 39 H 1.09004 * 109.47256 * 55.00841 * 10 6 5
40 40 H 0.97000 * 119.99939 * 179.97438 * 14 13 11
41 41 H 1.08000 * 119.86128 * 359.94532 * 23 22 21
42 42 H 1.08001 * 119.89119 * 179.97438 * 24 23 22
43 43 H 1.07998 * 120.08495 * 180.02562 * 25 24 23
44 44 H 1.08004 * 119.92000 * 179.72268 * 26 25 24
45 45 H 1.08999 * 110.41139 * 298.81406 * 28 27 26
46 46 H 1.08999 * 110.40953 * 61.14363 * 28 27 26
47 47 H 1.09005 * 109.47067 * 177.22795 * 31 29 21
48 48 H 1.09003 * 109.47054 * 297.22883 * 31 29 21
49 49 H 1.09002 * 109.47457 * 57.23318 * 31 29 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6925 -1.1993
5 6 2.0824 0.2225 -2.3469
6 6 2.5962 -0.5330 -3.5741
7 1 3.5520 -1.0011 -3.3388
8 6 1.6228 -1.5693 -3.9553
9 7 0.8703 -2.3686 -4.2493
10 6 2.7800 0.4460 -4.7355
11 6 3.4011 -0.2733 -5.9053
12 1 3.6403 -1.3236 -5.8281
13 6 3.6638 0.4096 -7.0738
14 7 4.2053 -0.2182 -8.0947
15 14 3.2494 2.2261 -7.2075
16 1 4.4149 3.0335 -6.7657
17 1 2.9241 2.5572 -8.6181
18 1 2.0799 2.5318 -6.3449
19 6 2.0324 -0.7105 1.2305
20 8 2.5841 -1.7856 1.1273
21 7 1.8684 -0.1511 2.4457
22 6 1.3216 1.1147 2.6784
23 6 0.8398 2.0525 1.7630
24 6 0.3342 3.2571 2.2028
25 6 0.3010 3.5460 3.5549
26 6 0.7762 2.6226 4.4671
27 6 1.2829 1.4134 4.0308
28 6 1.8577 0.2442 4.7985
29 6 2.2384 -0.7797 3.7167
30 1 1.6802 -1.7049 3.8590
31 6 3.7425 -1.0572 3.7537
32 1 -0.3633 0.6123 -0.8254
33 1 -0.3634 -1.0209 -0.1176
34 1 -0.3633 0.4086 0.9430
35 1 2.9173 -1.1205 -1.0287
36 1 1.0871 0.6162 -2.5525
37 1 2.7589 1.0462 -2.1182
38 1 1.8103 0.8476 -5.0293
39 1 3.4318 1.2620 -4.4233
40 1 4.3898 0.2622 -8.9170
41 1 0.8637 1.8334 0.7057
42 1 -0.0364 3.9780 1.4891
43 1 -0.0960 4.4902 3.8971
44 1 0.7550 2.8485 5.5231
45 1 2.7416 0.5533 5.3563
46 1 1.1097 -0.1722 5.4732
47 1 4.0105 -1.4789 4.7225
48 1 4.0010 -1.7645 2.9655
49 1 4.2878 -0.1261 3.5995
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000569947862.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:10
Heat of formation + Delta-G solvation = 35.617272 kcal
Electronic energy + Delta-G solvation = -29475.072727 eV
Core-core repulsion = 25595.537958 eV
Total energy + Delta-G solvation = -3879.534769 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.85903 -39.32729 -37.69537 -36.78991 -35.52538 -34.03111 -33.29587 -31.95029
-31.31354 -30.15803 -29.83921 -26.93612 -26.82626 -25.02824 -23.43319 -22.47073
-22.09490 -21.58053 -21.15478 -19.91331 -17.97807 -17.09993 -17.06107 -16.78752
-16.46902 -16.08667 -15.51159 -15.03435 -15.00156 -14.72157 -14.35264 -14.09496
-13.88658 -13.57480 -13.51047 -13.25778 -13.15334 -12.90460 -12.84684 -12.57378
-12.52008 -12.38954 -12.28774 -12.09492 -12.01059 -11.90558 -11.62687 -11.50052
-11.34932 -11.23095 -11.11104 -10.76013 -10.64911 -10.41880 -10.14717 -9.92845
-9.75208 -9.33069 -9.18683 -8.62388 -8.50873 -8.17279 -6.10538 -4.11341
0.85564 0.95066 2.26913 2.30040 3.24922 3.33787 3.34464 3.38253
3.68989 3.77952 3.80438 4.02251 4.05014 4.25114 4.37703 4.46911
4.56004 4.67891 4.74752 4.78700 4.83831 4.87075 4.95632 5.00881
5.04851 5.17970 5.23968 5.27942 5.37300 5.41924 5.46928 5.54075
5.56825 5.57920 5.59790 5.75891 5.81941 5.85604 6.02353 6.05368
6.05669 6.16081 6.18405 6.27665 6.52476 6.79170 6.89980 7.06934
7.11003 7.32098 7.63027 7.65142 8.40853 8.56902 8.93578 9.48932
11.02631
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.014896 B = 0.002577 C = 0.002371
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1879.247382 B =10864.250009 C =11806.562439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.064 3.936
3 H 0.080 0.920
4 N -0.674 5.674
5 C 0.062 3.938
6 C 0.021 3.979
7 H 0.106 0.894
8 C 0.251 3.749
9 N -0.468 5.468
10 C -0.004 4.004
11 C -0.528 4.528
12 H 0.075 0.925
13 C 0.071 3.929
14 N -0.897 5.897
15 Si 0.878 3.122
16 H -0.275 1.275
17 H -0.287 1.287
18 H -0.264 1.264
19 C 0.526 3.474
20 O -0.499 6.499
21 N -0.550 5.550
22 C 0.148 3.852
23 C -0.164 4.164
24 C -0.086 4.086
25 C -0.144 4.144
26 C -0.075 4.075
27 C -0.137 4.137
28 C -0.084 4.084
29 C 0.134 3.866
30 H 0.090 0.910
31 C -0.164 4.164
32 H 0.074 0.926
33 H 0.072 0.928
34 H 0.068 0.932
35 H 0.356 0.644
36 H 0.081 0.919
37 H 0.051 0.949
38 H 0.026 0.974
39 H 0.032 0.968
40 H 0.265 0.735
41 H 0.145 0.855
42 H 0.130 0.870
43 H 0.126 0.874
44 H 0.125 0.875
45 H 0.092 0.908
46 H 0.091 0.909
47 H 0.072 0.928
48 H 0.077 0.923
49 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.742 9.587 31.249 33.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.049 4.049
3 H 0.098 0.902
4 N -0.309 5.309
5 C -0.067 4.067
6 C -0.001 4.001
7 H 0.124 0.876
8 C -0.066 4.066
9 N -0.145 5.145
10 C -0.043 4.043
11 C -0.566 4.566
12 H 0.093 0.907
13 C -0.131 4.131
14 N -0.535 5.535
15 Si 0.705 3.295
16 H -0.201 1.201
17 H -0.213 1.213
18 H -0.188 1.188
19 C 0.315 3.685
20 O -0.371 6.371
21 N -0.274 5.274
22 C 0.052 3.948
23 C -0.185 4.185
24 C -0.104 4.104
25 C -0.163 4.163
26 C -0.094 4.094
27 C -0.140 4.140
28 C -0.121 4.121
29 C 0.032 3.968
30 H 0.108 0.892
31 C -0.222 4.222
32 H 0.093 0.907
33 H 0.091 0.909
34 H 0.087 0.913
35 H 0.177 0.823
36 H 0.099 0.901
37 H 0.069 0.931
38 H 0.044 0.956
39 H 0.051 0.949
40 H 0.074 0.926
41 H 0.162 0.838
42 H 0.148 0.852
43 H 0.144 0.856
44 H 0.143 0.857
45 H 0.111 0.889
46 H 0.109 0.891
47 H 0.091 0.909
48 H 0.096 0.904
49 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -7.047 7.367 30.276 31.946
hybrid contribution 0.950 1.770 0.038 2.009
sum -6.097 9.138 30.314 32.243
Atomic orbital electron populations
1.22003 0.91769 1.04223 1.02617 1.21815 0.98157 0.96727 0.88186
0.90236 1.60456 1.35477 1.32497 1.02452 1.22225 1.01885 0.93604
0.89016 1.18925 0.94075 0.91820 0.95293 0.87648 1.28655 0.93308
0.93310 0.91316 1.81020 1.11560 1.11303 1.10579 1.19636 0.97894
0.94214 0.92565 1.21027 1.41110 0.98206 0.96233 0.90734 1.24994
0.94356 0.98249 0.95544 1.69906 1.42962 1.36664 1.03931 0.86816
0.79393 0.85732 0.77600 1.20075 1.21308 1.18835 1.20775 0.78376
0.85851 0.83461 1.90734 1.40315 1.20702 1.85355 1.46099 1.58904
1.15370 1.07033 1.18367 0.96102 0.85842 0.94488 1.21387 1.03091
0.93768 1.00229 1.20949 0.97736 0.95721 0.96031 1.21052 1.02279
0.99788 0.93151 1.20405 0.97336 0.91762 0.99877 1.20005 1.04333
0.96676 0.92953 1.21235 1.01585 0.92275 0.96985 1.21654 0.97374
0.96627 0.81157 0.89170 1.22188 0.93563 1.02951 1.03523 0.90741
0.90908 0.91309 0.82284 0.90107 0.93059 0.95568 0.94942 0.92557
0.83800 0.85161 0.85555 0.85749 0.88931 0.89103 0.90927 0.90406
0.92166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.54 8.02 37.16 0.30 -1.24 16
2 C 0.06 0.72 2.11 -68.86 -0.15 0.57 16
3 H 0.08 0.77 5.40 -51.93 -0.28 0.49 16
4 N -0.67 -9.09 5.84 -107.95 -0.63 -9.72 16
5 C 0.06 0.85 4.85 -3.82 -0.02 0.83 16
6 C 0.02 0.37 2.35 -93.40 -0.22 0.15 16
7 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16
8 C 0.25 5.30 13.67 -20.74 -0.28 5.02 16
9 N -0.47 -10.89 18.54 42.17 0.78 -10.11 16
10 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16
11 C -0.53 -14.25 9.15 -34.44 -0.32 -14.57 16
12 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16
13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16
14 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16
15 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16
16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
18 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16
19 C 0.53 6.49 6.86 -10.98 -0.08 6.41 16
20 O -0.50 -7.60 14.61 5.56 0.08 -7.52 16
21 N -0.55 -5.61 2.89 -105.85 -0.31 -5.92 16
22 C 0.15 1.35 6.05 -83.57 -0.51 0.85 16
23 C -0.16 -1.36 7.23 -39.21 -0.28 -1.64 16
24 C -0.09 -0.59 10.02 -39.70 -0.40 -0.99 16
25 C -0.14 -0.90 10.06 -39.56 -0.40 -1.29 16
26 C -0.08 -0.48 10.03 -39.61 -0.40 -0.88 16
27 C -0.14 -1.05 6.23 -104.27 -0.65 -1.70 16
28 C -0.08 -0.51 6.58 -27.24 -0.18 -0.69 16
29 C 0.13 1.12 3.67 -67.53 -0.25 0.87 16
30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
31 C -0.16 -1.32 9.02 37.16 0.34 -0.99 16
32 H 0.07 0.71 7.63 -51.93 -0.40 0.32 16
33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.07 0.63 5.42 -51.93 -0.28 0.35 16
35 H 0.36 4.95 7.60 -39.29 -0.30 4.66 16
36 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16
37 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16
38 H 0.03 0.56 7.20 -51.93 -0.37 0.19 16
39 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16
40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
41 H 0.14 1.14 3.42 -52.49 -0.18 0.96 16
42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
43 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16
44 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16
45 H 0.09 0.44 7.70 -51.93 -0.40 0.04 16
46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
48 H 0.08 0.82 6.73 -51.93 -0.35 0.47 16
49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 392.38 15.07 5.91 5.91
Total: -1.00 -34.04 392.38 -8.88 -42.92
By element:
Atomic # 1 Polarization: 9.71 SS G_CDS: -7.15 Total: 2.56 kcal
Atomic # 6 Polarization: -3.91 SS G_CDS: -3.68 Total: -7.59 kcal
Atomic # 7 Polarization: -52.75 SS G_CDS: 0.62 Total: -52.13 kcal
Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.52 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -34.04 -8.88 -42.92 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000569947862.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.533 kcal
(2) G-P(sol) polarization free energy of solvation -34.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.497 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds