Wall clock time and date at job start Sat Apr 11 2020 06:24:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 109.47206 * 2 1
4 4 N 1.46893 * 109.47185 * 239.99687 * 2 1 3
5 5 C 1.46903 * 110.99931 * 84.99784 * 4 2 1
6 6 C 1.52998 * 109.47185 * 179.97438 * 5 4 2
7 7 H 1.09001 * 109.47559 * 305.00218 * 6 5 4
8 8 C 1.47200 * 109.46952 * 65.00631 * 6 5 4
9 9 N 4.90942 * 82.27704 * 240.86407 * 2 1 3
10 10 C 1.53006 * 109.46850 * 185.00079 * 6 5 4
11 11 C 1.50705 * 109.47037 * 175.00080 * 10 6 5
12 12 H 1.08000 * 119.99692 * 0.02562 * 11 10 6
13 13 C 1.37871 * 120.00203 * 180.02562 * 11 10 6
14 14 N 1.31512 * 120.00201 * 180.02562 * 13 11 10
15 15 Si 1.86798 * 119.99979 * 359.97438 * 13 11 10
16 16 H 1.48505 * 109.46989 * 90.00152 * 15 13 11
17 17 H 1.48501 * 109.47457 * 210.00164 * 15 13 11
18 18 H 1.48504 * 109.47196 * 330.00648 * 15 13 11
19 19 C 1.50705 * 109.47140 * 120.00125 * 2 1 3
20 20 O 1.21282 * 120.00248 * 110.67278 * 19 2 1
21 21 N 1.34783 * 119.99674 * 290.67784 * 19 2 1
22 22 C 1.39830 * 124.98141 * 355.97792 * 21 19 2
23 23 C 1.39631 * 129.33272 * 0.03556 * 22 21 19
24 24 C 1.37840 * 120.28577 * 179.97438 * 23 22 21
25 25 C 1.38302 * 120.21899 * 0.02562 * 24 23 22
26 26 C 1.38225 * 119.82831 * 359.97438 * 25 24 23
27 27 C 1.38177 * 120.15114 * 359.97438 * 26 25 24
28 28 C 1.51221 * 130.97470 * 179.97438 * 27 26 25
29 29 C 1.46538 * 124.97535 * 176.04941 * 21 19 2
30 30 H 1.08996 * 110.36946 * 298.94737 * 29 21 19
31 31 C 1.52996 * 110.30638 * 61.04525 * 29 21 19
32 32 H 1.08999 * 109.46948 * 53.43104 * 1 2 3
33 33 H 1.09002 * 109.47321 * 173.43027 * 1 2 3
34 34 H 1.09003 * 109.46858 * 293.42466 * 1 2 3
35 35 H 1.00897 * 111.00694 * 208.95287 * 4 2 1
36 36 H 1.08992 * 109.47396 * 300.00434 * 5 4 2
37 37 H 1.09006 * 109.46824 * 59.99981 * 5 4 2
38 38 H 1.08995 * 109.47520 * 295.00052 * 10 6 5
39 39 H 1.09004 * 109.47256 * 55.00841 * 10 6 5
40 40 H 0.97000 * 119.99939 * 179.97438 * 14 13 11
41 41 H 1.08000 * 119.86128 * 359.94532 * 23 22 21
42 42 H 1.08001 * 119.89119 * 179.97438 * 24 23 22
43 43 H 1.07998 * 120.08495 * 180.02562 * 25 24 23
44 44 H 1.08004 * 119.92000 * 179.72268 * 26 25 24
45 45 H 1.08999 * 110.41139 * 298.81406 * 28 27 26
46 46 H 1.08999 * 110.40953 * 61.14363 * 28 27 26
47 47 H 1.09005 * 109.47067 * 177.22795 * 31 29 21
48 48 H 1.09003 * 109.47054 * 297.22883 * 31 29 21
49 49 H 1.09002 * 109.47457 * 57.23318 * 31 29 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6925 -1.1993
5 6 2.0824 0.2225 -2.3469
6 6 2.5962 -0.5330 -3.5741
7 1 3.5520 -1.0011 -3.3388
8 6 1.6228 -1.5693 -3.9553
9 7 0.8703 -2.3686 -4.2493
10 6 2.7800 0.4460 -4.7355
11 6 3.4011 -0.2733 -5.9053
12 1 3.6403 -1.3236 -5.8281
13 6 3.6638 0.4096 -7.0738
14 7 4.2053 -0.2182 -8.0947
15 14 3.2494 2.2261 -7.2075
16 1 4.4149 3.0335 -6.7657
17 1 2.9241 2.5572 -8.6181
18 1 2.0799 2.5318 -6.3449
19 6 2.0324 -0.7105 1.2305
20 8 2.5841 -1.7856 1.1273
21 7 1.8684 -0.1511 2.4457
22 6 1.3216 1.1147 2.6784
23 6 0.8398 2.0525 1.7630
24 6 0.3342 3.2571 2.2028
25 6 0.3010 3.5460 3.5549
26 6 0.7762 2.6226 4.4671
27 6 1.2829 1.4134 4.0308
28 6 1.8577 0.2442 4.7985
29 6 2.2384 -0.7797 3.7167
30 1 1.6802 -1.7049 3.8590
31 6 3.7425 -1.0572 3.7537
32 1 -0.3633 0.6123 -0.8254
33 1 -0.3634 -1.0209 -0.1176
34 1 -0.3633 0.4086 0.9430
35 1 2.9173 -1.1205 -1.0287
36 1 1.0871 0.6162 -2.5525
37 1 2.7589 1.0462 -2.1182
38 1 1.8103 0.8476 -5.0293
39 1 3.4318 1.2620 -4.4233
40 1 4.3898 0.2622 -8.9170
41 1 0.8637 1.8334 0.7057
42 1 -0.0364 3.9780 1.4891
43 1 -0.0960 4.4902 3.8971
44 1 0.7550 2.8485 5.5231
45 1 2.7416 0.5533 5.3563
46 1 1.1097 -0.1722 5.4732
47 1 4.0105 -1.4789 4.7225
48 1 4.0010 -1.7645 2.9655
49 1 4.2878 -0.1261 3.5995
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000569947862.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:09
Heat of formation + Delta-G solvation = 14.219553 kcal
Electronic energy + Delta-G solvation = -29476.000602 eV
Core-core repulsion = 25595.537958 eV
Total energy + Delta-G solvation = -3880.462644 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.54155 -40.11444 -38.83910 -37.68880 -36.72305 -35.54011 -34.56912 -33.46662
-31.87446 -31.10881 -30.62926 -28.44485 -27.40501 -25.95858 -24.47162 -23.30555
-23.22321 -22.67129 -21.96205 -20.65211 -19.08518 -18.80113 -18.11778 -17.76373
-17.28126 -16.87548 -16.41619 -16.28401 -15.78927 -15.62773 -15.36528 -15.24668
-15.09000 -14.63639 -14.47101 -14.34735 -14.11602 -13.87832 -13.75327 -13.59085
-13.53606 -13.51823 -13.30130 -13.21884 -13.11730 -12.90474 -12.67348 -12.59310
-12.46971 -12.31215 -12.09806 -12.07829 -11.67183 -11.64431 -11.61995 -11.30375
-11.27003 -10.93785 -10.72341 -9.68067 -9.47930 -8.79319 -8.23795 -6.30092
0.26447 0.45787 1.43535 1.46196 1.47189 1.57290 1.57726 2.04040
2.11613 2.42412 2.87300 2.94614 3.11937 3.14957 3.30353 3.48967
3.63143 3.83892 3.92543 3.98283 4.09409 4.18051 4.18443 4.29886
4.32860 4.35761 4.46048 4.58070 4.59357 4.67007 4.69974 4.73164
4.76838 4.78937 4.90521 4.93527 4.99055 5.11029 5.18056 5.19906
5.23287 5.24015 5.44604 5.48944 5.55629 5.63011 5.67786 5.85886
6.03262 6.21594 6.27900 6.37809 6.77589 6.80835 6.89630 7.34342
8.93474
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.014896 B = 0.002577 C = 0.002371
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1879.247382 B =10864.250009 C =11806.562439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.068 3.932
3 H 0.103 0.897
4 N -0.691 5.691
5 C 0.074 3.926
6 C 0.024 3.976
7 H 0.110 0.890
8 C 0.262 3.738
9 N -0.515 5.515
10 C -0.001 4.001
11 C -0.533 4.533
12 H 0.025 0.975
13 C 0.000 4.000
14 N -0.956 5.956
15 Si 0.952 3.048
16 H -0.257 1.257
17 H -0.297 1.297
18 H -0.232 1.232
19 C 0.520 3.480
20 O -0.542 6.542
21 N -0.549 5.549
22 C 0.116 3.884
23 C -0.173 4.173
24 C -0.092 4.092
25 C -0.141 4.141
26 C -0.079 4.079
27 C -0.141 4.141
28 C -0.075 4.075
29 C 0.124 3.876
30 H 0.083 0.917
31 C -0.157 4.157
32 H 0.086 0.914
33 H 0.047 0.953
34 H 0.080 0.920
35 H 0.351 0.649
36 H 0.091 0.909
37 H 0.084 0.916
38 H 0.032 0.968
39 H 0.066 0.934
40 H 0.265 0.735
41 H 0.145 0.855
42 H 0.149 0.851
43 H 0.150 0.850
44 H 0.148 0.852
45 H 0.109 0.891
46 H 0.108 0.892
47 H 0.096 0.904
48 H 0.047 0.953
49 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.768 13.819 34.279 37.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.044 4.044
3 H 0.121 0.879
4 N -0.327 5.327
5 C -0.056 4.056
6 C 0.002 3.998
7 H 0.128 0.872
8 C -0.054 4.054
9 N -0.193 5.193
10 C -0.040 4.040
11 C -0.571 4.571
12 H 0.043 0.957
13 C -0.196 4.196
14 N -0.597 5.597
15 Si 0.775 3.225
16 H -0.181 1.181
17 H -0.223 1.223
18 H -0.155 1.155
19 C 0.310 3.690
20 O -0.418 6.418
21 N -0.272 5.272
22 C 0.022 3.978
23 C -0.193 4.193
24 C -0.111 4.111
25 C -0.159 4.159
26 C -0.097 4.097
27 C -0.144 4.144
28 C -0.112 4.112
29 C 0.022 3.978
30 H 0.101 0.899
31 C -0.215 4.215
32 H 0.105 0.895
33 H 0.066 0.934
34 H 0.099 0.901
35 H 0.172 0.828
36 H 0.110 0.890
37 H 0.102 0.898
38 H 0.051 0.949
39 H 0.084 0.916
40 H 0.073 0.927
41 H 0.162 0.838
42 H 0.167 0.833
43 H 0.168 0.832
44 H 0.166 0.834
45 H 0.127 0.873
46 H 0.126 0.874
47 H 0.114 0.886
48 H 0.066 0.934
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -8.099 11.632 33.371 36.257
hybrid contribution 1.271 0.401 -0.825 1.568
sum -6.828 12.034 32.546 35.365
Atomic orbital electron populations
1.21960 0.91216 1.02932 1.03783 1.21860 0.98367 0.97329 0.86807
0.87948 1.60388 1.35437 1.33327 1.03504 1.22127 1.03082 0.93449
0.86932 1.19055 0.93755 0.90731 0.96238 0.87220 1.29439 0.92866
0.93091 0.90054 1.81011 1.13443 1.12732 1.12105 1.19581 0.98050
0.95028 0.91292 1.21409 1.40617 0.96519 0.98570 0.95700 1.26103
0.94257 1.04295 0.94977 1.70104 1.45423 1.39247 1.04936 0.85638
0.80782 0.78544 0.77586 1.18107 1.22330 1.15488 1.20988 0.78024
0.85461 0.84504 1.90712 1.42535 1.22509 1.86055 1.46094 1.58360
1.15943 1.06826 1.18626 0.97850 0.85691 0.95645 1.21498 1.03375
0.94236 1.00170 1.21243 0.97362 0.95511 0.96949 1.21426 1.01072
1.00534 0.92908 1.20735 0.96594 0.91116 1.01291 1.20278 1.04124
0.97460 0.92550 1.21247 1.02693 0.91069 0.96224 1.21845 0.97312
0.97241 0.81404 0.89870 1.22118 0.93573 1.02098 1.03709 0.89518
0.93418 0.90085 0.82822 0.89019 0.89767 0.94924 0.91619 0.92674
0.83816 0.83286 0.83233 0.83405 0.87270 0.87374 0.88568 0.93422
0.92354
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.76 8.02 71.98 0.58 -2.19 16
2 C 0.07 1.45 2.11 44.17 0.09 1.55 16
3 H 0.10 1.71 5.40 -2.39 -0.01 1.70 16
4 N -0.69 -18.03 5.84 -495.45 -2.89 -20.93 16
5 C 0.07 1.80 4.85 86.30 0.42 2.21 16
6 C 0.02 0.83 2.35 -12.60 -0.03 0.80 16
7 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16
8 C 0.26 11.15 13.67 89.44 1.22 12.37 16
9 N -0.52 -24.62 18.54 20.01 0.37 -24.24 16
10 C 0.00 -0.02 3.49 29.85 0.10 0.08 16
11 C -0.53 -29.12 9.15 25.60 0.23 -28.89 16
12 H 0.02 1.55 7.84 -2.91 -0.02 1.53 16
13 C 0.00 0.00 5.47 84.65 0.46 0.46 16
14 N -0.96 -59.88 13.96 21.44 0.30 -59.58 16
15 Si 0.95 41.13 27.47 68.60 1.88 43.02 16
16 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16
17 H -0.30 -13.21 7.11 99.48 0.71 -12.51 16
18 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16
19 C 0.52 12.89 6.86 87.66 0.60 13.49 16
20 O -0.54 -17.30 14.61 -3.04 -0.04 -17.35 16
21 N -0.55 -10.88 2.89 -607.19 -1.75 -12.63 16
22 C 0.12 1.92 6.05 38.28 0.23 2.15 16
23 C -0.17 -2.41 7.23 22.51 0.16 -2.25 16
24 C -0.09 -0.95 10.02 22.19 0.22 -0.73 16
25 C -0.14 -1.22 10.06 22.28 0.22 -0.99 16
26 C -0.08 -0.73 10.03 22.25 0.22 -0.51 16
27 C -0.14 -1.81 6.23 -19.64 -0.12 -1.93 16
28 C -0.08 -0.74 6.58 30.26 0.20 -0.54 16
29 C 0.12 1.98 3.67 45.23 0.17 2.15 16
30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
31 C -0.16 -2.49 9.02 71.98 0.65 -1.84 16
32 H 0.09 1.47 7.63 -2.39 -0.02 1.45 16
33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
34 H 0.08 1.38 5.42 -2.39 -0.01 1.36 16
35 H 0.35 9.77 7.60 -89.70 -0.68 9.09 16
36 H 0.09 2.08 7.57 -2.39 -0.02 2.06 16
37 H 0.08 1.56 8.06 -2.38 -0.02 1.54 16
38 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16
39 H 0.07 2.27 7.57 -2.38 -0.02 2.25 16
40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
41 H 0.14 1.89 3.42 -2.91 -0.01 1.88 16
42 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16
43 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16
44 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16
45 H 0.11 0.72 7.70 -2.39 -0.02 0.70 16
46 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
47 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16
48 H 0.05 1.05 6.73 -2.39 -0.02 1.04 16
49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
Total: -1.00 -78.88 392.38 3.75 -75.13
By element:
Atomic # 1 Polarization: 20.95 SS G_CDS: 0.24 Total: 21.19 kcal
Atomic # 6 Polarization: -10.25 SS G_CDS: 5.64 Total: -4.61 kcal
Atomic # 7 Polarization: -113.41 SS G_CDS: -3.97 Total: -117.38 kcal
Atomic # 8 Polarization: -17.30 SS G_CDS: -0.04 Total: -17.35 kcal
Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal
Total: -78.88 3.75 -75.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000569947862.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal
(2) G-P(sol) polarization free energy of solvation -78.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds