Wall clock time and date at job start Sat Apr 11 2020 06:25:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 110.88992 * 2 1
4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3
5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1
6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2
7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4
8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4
9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5
10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5
11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6
12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6
13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6
14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2
15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4
16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5
17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5
18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14
19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15
20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17
21 21 O 1.21583 * 120.00167 * 359.97438 * 20 19 18
22 22 C 1.47576 * 119.99737 * 179.97438 * 20 19 18
23 23 C 1.40244 * 119.83644 * 359.97438 * 22 20 19
24 24 C 1.36189 * 120.38097 * 180.02562 * 23 22 20
25 25 C 1.39912 * 119.96272 * 359.97438 * 24 23 22
26 26 C 1.46254 * 133.83699 * 179.97438 * 25 24 23
27 27 C 1.34461 * 107.03143 * 180.02562 * 26 25 24
28 28 N 1.36557 * 109.97673 * 0.02562 * 27 26 25
29 29 H 0.97002 * 125.06985 * 179.97438 * 28 27 26
30 30 C 1.37829 * 109.86228 * 359.97438 * 28 27 26
31 31 C 1.38688 * 133.37557 * 180.33389 * 30 28 27
32 32 H 1.08996 * 109.47303 * 182.42955 * 1 2 3
33 33 H 1.09006 * 109.46537 * 302.42803 * 1 2 3
34 34 H 1.08996 * 109.47165 * 62.42956 * 1 2 3
35 35 H 1.08998 * 110.36455 * 86.04455 * 4 2 1
36 36 H 1.08995 * 110.37228 * 323.71591 * 4 2 1
37 37 H 0.96996 * 119.99743 * 179.97438 * 9 8 6
38 38 H 1.09007 * 109.88188 * 118.12720 * 14 5 4
39 39 H 1.09002 * 109.88437 * 239.29313 * 14 5 4
40 40 H 1.09009 * 109.46621 * 48.78194 * 17 15 14
41 41 H 1.09003 * 109.47118 * 168.77881 * 17 15 14
42 42 H 1.09000 * 109.47127 * 299.99186 * 18 17 15
43 43 H 1.08993 * 109.47568 * 60.00281 * 18 17 15
44 44 H 0.96996 * 120.00130 * 359.97438 * 19 18 17
45 45 H 1.08007 * 119.80284 * 0.02581 * 23 22 20
46 46 H 1.08005 * 120.02221 * 179.97438 * 24 23 22
47 47 H 1.07997 * 126.48429 * 0.02702 * 26 25 24
48 48 H 1.08002 * 125.00985 * 179.97438 * 27 26 25
49 49 H 1.08003 * 120.16771 * 359.90133 * 31 30 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9186 1.0183 0.0000
4 6 2.0852 -0.8063 -1.2006
5 7 3.4274 -1.2421 -0.7741
6 6 4.4642 -1.5651 -1.6083
7 1 5.4143 -1.8707 -1.1957
8 6 4.2957 -1.4944 -2.9844
9 7 3.1396 -1.1164 -3.4873
10 14 5.7102 -1.9344 -4.1224
11 1 6.8932 -2.3243 -3.3139
12 1 5.3104 -3.0691 -4.9931
13 1 6.0512 -0.7601 -4.9651
14 6 3.4667 -1.2785 0.6951
15 6 2.0870 -0.8078 1.2019
16 1 1.4481 -1.6634 1.4209
17 6 2.2317 0.0866 2.4349
18 6 2.6628 -0.7620 3.6327
19 7 2.8019 0.0947 4.8131
20 6 3.1751 -0.4393 5.9930
21 8 3.3958 -1.6319 6.0779
22 6 3.3157 0.4236 7.1818
23 6 3.0608 1.7989 7.0799
24 6 3.1877 2.6056 8.1698
25 6 3.5739 2.0625 9.4000
26 6 3.7996 2.6267 10.7303
27 6 4.1624 1.6106 11.5327
28 7 4.1879 0.4432 10.8246
29 1 4.4212 -0.4249 11.1892
30 6 3.8326 0.6823 9.5145
31 6 3.6953 -0.1329 8.4009
32 1 -0.3634 -1.0267 0.0436
33 1 -0.3632 0.5511 0.8675
34 1 -0.3633 0.4756 -0.9109
35 1 2.1553 -0.1715 -2.0839
36 1 1.4522 -1.6703 -1.4026
37 1 3.0220 -1.0667 -4.4488
38 1 3.6616 -2.2956 1.0356
39 1 4.2431 -0.6073 1.0620
40 1 2.9836 0.8519 2.2422
41 1 1.2757 0.5631 2.6523
42 1 1.9108 -1.5272 3.8253
43 1 3.6187 -1.2383 3.4154
44 1 2.6254 1.0460 4.7454
45 1 2.7621 2.2206 6.1315
46 1 2.9903 3.6640 8.0846
47 1 3.6946 3.6633 11.0144
48 1 4.3996 1.7040 12.5822
49 1 3.8869 -1.1930 8.4774
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001103470644.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:21
Heat of formation + Delta-G solvation = 37.608390 kcal
Electronic energy + Delta-G solvation = -28195.177859 eV
Core-core repulsion = 24315.729431 eV
Total energy + Delta-G solvation = -3879.448428 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.63746 -39.82438 -38.14286 -36.86174 -35.25648 -33.23902 -32.33986 -31.31840
-30.66018 -29.76452 -29.32960 -26.83655 -25.64229 -24.40937 -23.27216 -22.88615
-21.91675 -21.11656 -20.50655 -19.66167 -19.21220 -18.59282 -17.22776 -16.82068
-16.45294 -16.01103 -15.64221 -15.08283 -14.81321 -14.64461 -14.35466 -14.28252
-14.08839 -13.78046 -13.54853 -13.49169 -13.40132 -12.94937 -12.78380 -12.27106
-12.08155 -12.00891 -11.83017 -11.59356 -11.46585 -11.35003 -11.08718 -10.98467
-10.81405 -10.72164 -10.14752 -10.13776 -10.02012 -9.83645 -9.76879 -9.67551
-9.28253 -9.09963 -8.63759 -8.60516 -8.14138 -6.76565 -5.60413 -3.01505
0.47259 1.12529 2.19712 2.63186 2.85976 3.16749 3.42567 3.48232
3.50707 3.69506 4.29091 4.43267 4.53192 4.57211 4.72259 4.89828
4.96381 5.03332 5.14794 5.16635 5.29928 5.33433 5.50271 5.52409
5.58308 5.60061 5.64180 5.71660 5.81588 5.96676 5.99386 6.04141
6.12971 6.18715 6.22449 6.29003 6.31030 6.32258 6.37597 6.44277
6.60610 6.66345 6.70082 6.74565 6.88201 7.05722 7.07319 7.44439
7.60660 7.69456 7.91975 8.15196 8.42092 9.27915 9.88895 10.54497
11.43364
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.021098 B = 0.001783 C = 0.001718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1326.820278 B =15703.027497 C =16289.962836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.115 4.115
3 H 0.068 0.932
4 C 0.158 3.842
5 N -0.606 5.606
6 C -0.219 4.219
7 H 0.077 0.923
8 C -0.014 4.014
9 N -0.923 5.923
10 Si 0.913 3.087
11 H -0.280 1.280
12 H -0.291 1.291
13 H -0.291 1.291
14 C 0.139 3.861
15 C -0.092 4.092
16 H 0.072 0.928
17 C -0.116 4.116
18 C 0.118 3.882
19 N -0.722 5.722
20 C 0.558 3.442
21 O -0.541 6.541
22 C -0.116 4.116
23 C -0.114 4.114
24 C -0.079 4.079
25 C -0.088 4.088
26 C -0.211 4.211
27 C 0.060 3.940
28 N -0.592 5.592
29 H 0.418 0.582
30 C 0.080 3.920
31 C -0.060 4.060
32 H 0.050 0.950
33 H 0.042 0.958
34 H 0.053 0.947
35 H 0.105 0.895
36 H 0.011 0.989
37 H 0.250 0.750
38 H 0.019 0.981
39 H 0.022 0.978
40 H 0.070 0.930
41 H 0.066 0.934
42 H 0.068 0.932
43 H 0.073 0.927
44 H 0.399 0.601
45 H 0.128 0.872
46 H 0.129 0.871
47 H 0.149 0.851
48 H 0.173 0.827
49 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.009 9.314 29.353 30.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 H 0.086 0.914
4 C 0.034 3.966
5 N -0.331 5.331
6 C -0.347 4.347
7 H 0.095 0.905
8 C -0.209 4.209
9 N -0.572 5.572
10 Si 0.744 3.256
11 H -0.206 1.206
12 H -0.218 1.218
13 H -0.218 1.218
14 C 0.013 3.987
15 C -0.112 4.112
16 H 0.091 0.909
17 C -0.155 4.155
18 C -0.005 4.005
19 N -0.374 5.374
20 C 0.345 3.655
21 O -0.419 6.419
22 C -0.120 4.120
23 C -0.133 4.133
24 C -0.097 4.097
25 C -0.093 4.093
26 C -0.236 4.236
27 C -0.068 4.068
28 N -0.194 5.194
29 H 0.255 0.745
30 C -0.026 4.026
31 C -0.081 4.081
32 H 0.069 0.931
33 H 0.061 0.939
34 H 0.072 0.928
35 H 0.122 0.878
36 H 0.029 0.971
37 H 0.061 0.939
38 H 0.037 0.963
39 H 0.040 0.960
40 H 0.088 0.912
41 H 0.085 0.915
42 H 0.086 0.914
43 H 0.091 0.909
44 H 0.235 0.765
45 H 0.145 0.855
46 H 0.147 0.853
47 H 0.166 0.834
48 H 0.190 0.810
49 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -2.749 8.310 29.227 30.510
hybrid contribution 0.758 -0.236 -0.383 0.882
sum -1.991 8.074 28.844 30.019
Atomic orbital electron populations
1.21632 0.95781 1.01124 1.00540 1.22629 0.94349 0.99360 0.97110
0.91380 1.21963 0.84075 0.95853 0.94739 1.44515 1.10517 1.78904
0.99198 1.19144 0.90988 1.37367 0.87240 0.90508 1.24783 0.97276
1.02209 0.96617 1.69816 1.22363 1.54130 1.10858 0.86011 0.81201
0.77572 0.80826 1.20556 1.21812 1.21804 1.21378 0.93745 0.97218
0.86335 1.22146 0.98147 0.97611 0.93284 0.90940 1.21793 1.01506
0.98513 0.93643 1.21532 1.02335 0.93321 0.83322 1.45978 1.69630
1.12353 1.09422 1.18135 0.76964 0.87420 0.82989 1.90785 1.50387
1.15532 1.85206 1.19540 1.05396 0.93797 0.93315 1.20742 1.01365
0.92250 0.98974 1.20178 0.99185 0.99823 0.90538 1.19409 1.03155
0.92272 0.94482 1.21752 1.11189 0.99160 0.91508 1.21917 1.02416
0.84641 0.97809 1.41797 1.60113 1.10155 1.07383 0.74507 1.18100
1.04042 0.94941 0.85542 1.20088 0.99275 0.99531 0.89225 0.93097
0.93853 0.92824 0.87780 0.97101 0.93880 0.96268 0.95967 0.91161
0.91542 0.91371 0.90870 0.76525 0.85470 0.85320 0.83357 0.81028
0.84758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.04 9.30 37.16 0.35 -1.70 16
2 C -0.11 -2.12 3.09 -88.47 -0.27 -2.39 16
3 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16
4 C 0.16 3.86 5.36 -2.53 -0.01 3.85 16
5 N -0.61 -15.81 3.39 -170.06 -0.58 -16.38 16
6 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16
7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
8 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16
9 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16
10 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16
11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
14 C 0.14 2.95 6.25 -3.06 -0.02 2.93 16
15 C -0.09 -1.56 2.38 -88.77 -0.21 -1.77 16
16 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16
17 C -0.12 -1.51 4.74 -26.73 -0.13 -1.64 16
18 C 0.12 1.55 5.56 -4.04 -0.02 1.53 16
19 N -0.72 -8.30 5.50 -61.34 -0.34 -8.64 16
20 C 0.56 7.48 7.76 -12.45 -0.10 7.38 16
21 O -0.54 -9.25 16.31 5.29 0.09 -9.16 16
22 C -0.12 -1.30 5.87 -104.95 -0.62 -1.91 16
23 C -0.11 -1.01 9.46 -39.57 -0.37 -1.38 16
24 C -0.08 -0.66 10.03 -39.69 -0.40 -1.06 16
25 C -0.09 -0.81 6.37 -105.05 -0.67 -1.48 16
26 C -0.21 -1.46 11.08 -37.70 -0.42 -1.88 16
27 C 0.06 0.32 11.81 -16.78 -0.20 0.12 16
28 N -0.59 -3.77 6.07 -10.68 -0.06 -3.84 16
29 H 0.42 1.53 8.96 -40.82 -0.37 1.17 16
30 C 0.08 0.75 7.26 -84.00 -0.61 0.15 16
31 C -0.06 -0.64 9.61 -39.03 -0.37 -1.02 16
32 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16
33 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16
34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16
35 H 0.10 2.86 5.87 -51.93 -0.31 2.56 16
36 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16
37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16
39 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16
40 H 0.07 0.92 7.95 -51.92 -0.41 0.51 16
41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
43 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16
44 H 0.40 3.43 6.46 -40.82 -0.26 3.17 16
45 H 0.13 0.82 6.36 -52.48 -0.33 0.49 16
46 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16
47 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16
48 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16
49 H 0.13 1.43 7.62 -52.48 -0.40 1.03 16
LS Contribution 395.79 15.07 5.96 5.96
Total: -1.00 -35.17 395.79 -11.20 -46.37
By element:
Atomic # 1 Polarization: 9.54 SS G_CDS: -7.48 Total: 2.06 kcal
Atomic # 6 Polarization: -2.82 SS G_CDS: -4.33 Total: -7.14 kcal
Atomic # 7 Polarization: -55.12 SS G_CDS: -0.42 Total: -55.54 kcal
Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -35.17 -11.20 -46.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103470644.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.982 kcal
(2) G-P(sol) polarization free energy of solvation -35.173 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.374 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds