Wall clock time and date at job start Sat Apr 11 2020 06:25:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 110.88992 * 2 1
4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3
5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1
6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2
7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4
8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4
9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5
10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5
11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6
12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6
13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6
14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2
15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4
16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5
17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5
18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14
19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15
20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17
21 21 O 1.21583 * 120.00167 * 359.97438 * 20 19 18
22 22 C 1.47576 * 119.99737 * 179.97438 * 20 19 18
23 23 C 1.40244 * 119.83644 * 359.97438 * 22 20 19
24 24 C 1.36189 * 120.38097 * 180.02562 * 23 22 20
25 25 C 1.39912 * 119.96272 * 359.97438 * 24 23 22
26 26 C 1.46254 * 133.83699 * 179.97438 * 25 24 23
27 27 C 1.34461 * 107.03143 * 180.02562 * 26 25 24
28 28 N 1.36557 * 109.97673 * 0.02562 * 27 26 25
29 29 H 0.97002 * 125.06985 * 179.97438 * 28 27 26
30 30 C 1.37829 * 109.86228 * 359.97438 * 28 27 26
31 31 C 1.38688 * 133.37557 * 180.33389 * 30 28 27
32 32 H 1.08996 * 109.47303 * 182.42955 * 1 2 3
33 33 H 1.09006 * 109.46537 * 302.42803 * 1 2 3
34 34 H 1.08996 * 109.47165 * 62.42956 * 1 2 3
35 35 H 1.08998 * 110.36455 * 86.04455 * 4 2 1
36 36 H 1.08995 * 110.37228 * 323.71591 * 4 2 1
37 37 H 0.96996 * 119.99743 * 179.97438 * 9 8 6
38 38 H 1.09007 * 109.88188 * 118.12720 * 14 5 4
39 39 H 1.09002 * 109.88437 * 239.29313 * 14 5 4
40 40 H 1.09009 * 109.46621 * 48.78194 * 17 15 14
41 41 H 1.09003 * 109.47118 * 168.77881 * 17 15 14
42 42 H 1.09000 * 109.47127 * 299.99186 * 18 17 15
43 43 H 1.08993 * 109.47568 * 60.00281 * 18 17 15
44 44 H 0.96996 * 120.00130 * 359.97438 * 19 18 17
45 45 H 1.08007 * 119.80284 * 0.02581 * 23 22 20
46 46 H 1.08005 * 120.02221 * 179.97438 * 24 23 22
47 47 H 1.07997 * 126.48429 * 0.02702 * 26 25 24
48 48 H 1.08002 * 125.00985 * 179.97438 * 27 26 25
49 49 H 1.08003 * 120.16771 * 359.90133 * 31 30 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9186 1.0183 0.0000
4 6 2.0852 -0.8063 -1.2006
5 7 3.4274 -1.2421 -0.7741
6 6 4.4642 -1.5651 -1.6083
7 1 5.4143 -1.8707 -1.1957
8 6 4.2957 -1.4944 -2.9844
9 7 3.1396 -1.1164 -3.4873
10 14 5.7102 -1.9344 -4.1224
11 1 6.8932 -2.3243 -3.3139
12 1 5.3104 -3.0691 -4.9931
13 1 6.0512 -0.7601 -4.9651
14 6 3.4667 -1.2785 0.6951
15 6 2.0870 -0.8078 1.2019
16 1 1.4481 -1.6634 1.4209
17 6 2.2317 0.0866 2.4349
18 6 2.6628 -0.7620 3.6327
19 7 2.8019 0.0947 4.8131
20 6 3.1751 -0.4393 5.9930
21 8 3.3958 -1.6319 6.0779
22 6 3.3157 0.4236 7.1818
23 6 3.0608 1.7989 7.0799
24 6 3.1877 2.6056 8.1698
25 6 3.5739 2.0625 9.4000
26 6 3.7996 2.6267 10.7303
27 6 4.1624 1.6106 11.5327
28 7 4.1879 0.4432 10.8246
29 1 4.4212 -0.4249 11.1892
30 6 3.8326 0.6823 9.5145
31 6 3.6953 -0.1329 8.4009
32 1 -0.3634 -1.0267 0.0436
33 1 -0.3632 0.5511 0.8675
34 1 -0.3633 0.4756 -0.9109
35 1 2.1553 -0.1715 -2.0839
36 1 1.4522 -1.6703 -1.4026
37 1 3.0220 -1.0667 -4.4488
38 1 3.6616 -2.2956 1.0356
39 1 4.2431 -0.6073 1.0620
40 1 2.9836 0.8519 2.2422
41 1 1.2757 0.5631 2.6523
42 1 1.9108 -1.5272 3.8253
43 1 3.6187 -1.2383 3.4154
44 1 2.6254 1.0460 4.7454
45 1 2.7621 2.2206 6.1315
46 1 2.9903 3.6640 8.0846
47 1 3.6946 3.6633 11.0144
48 1 4.3996 1.7040 12.5822
49 1 3.8869 -1.1930 8.4774
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103470644.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:20
Heat of formation + Delta-G solvation = 15.481017 kcal
Electronic energy + Delta-G solvation = -28196.137374 eV
Core-core repulsion = 24315.729431 eV
Total energy + Delta-G solvation = -3880.407943 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.21928 -40.81526 -39.71405 -37.57062 -36.51080 -35.01904 -32.97642 -32.58223
-32.50042 -30.49969 -30.00087 -28.37836 -27.37579 -25.78608 -24.37193 -23.55485
-23.26040 -21.62193 -21.53636 -21.26570 -20.61009 -19.30872 -18.86199 -17.94284
-17.25450 -17.09116 -16.88874 -16.56295 -16.00056 -15.69048 -15.42323 -15.33926
-14.99786 -14.89621 -14.74378 -14.56536 -14.28551 -14.14722 -13.91448 -13.66624
-13.50280 -13.36314 -12.90878 -12.78113 -12.76280 -12.72508 -12.56032 -12.38505
-12.17368 -12.02555 -11.92881 -11.77513 -11.41995 -11.26223 -11.17276 -10.89115
-10.77395 -10.73725 -10.14603 -9.27701 -8.86661 -8.70270 -7.77111 -5.21458
-0.24868 0.48021 1.44684 1.45747 1.56273 1.61199 1.99951 2.05375
2.36469 2.48884 2.95303 3.31281 3.66823 3.72461 3.74762 3.79441
3.92512 3.99292 4.09056 4.16488 4.27803 4.30608 4.35801 4.39247
4.53549 4.64756 4.68282 4.71446 4.77537 4.81297 4.85292 5.00859
5.02923 5.03630 5.05320 5.14174 5.20663 5.30140 5.31388 5.40628
5.43185 5.47102 5.49091 5.56378 5.69269 5.77783 5.78496 5.86841
6.10336 6.33288 6.53746 6.64687 7.12333 7.19240 7.80183 8.44203
9.24278
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.021098 B = 0.001783 C = 0.001718
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1326.820278 B =15703.027497 C =16289.962836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.100 4.100
3 H 0.073 0.927
4 C 0.159 3.841
5 N -0.629 5.629
6 C -0.239 4.239
7 H 0.076 0.924
8 C -0.068 4.068
9 N -0.947 5.947
10 Si 0.979 3.021
11 H -0.269 1.269
12 H -0.292 1.292
13 H -0.288 1.288
14 C 0.133 3.867
15 C -0.079 4.079
16 H 0.076 0.924
17 C -0.100 4.100
18 C 0.124 3.876
19 N -0.708 5.708
20 C 0.555 3.445
21 O -0.589 6.589
22 C -0.138 4.138
23 C -0.113 4.113
24 C -0.082 4.082
25 C -0.102 4.102
26 C -0.232 4.232
27 C 0.076 3.924
28 N -0.588 5.588
29 H 0.429 0.571
30 C 0.059 3.941
31 C -0.072 4.072
32 H 0.047 0.953
33 H 0.081 0.919
34 H 0.050 0.950
35 H 0.069 0.931
36 H -0.019 1.019
37 H 0.247 0.753
38 H 0.009 0.991
39 H 0.026 0.974
40 H 0.075 0.925
41 H 0.100 0.900
42 H 0.063 0.937
43 H 0.049 0.951
44 H 0.416 0.584
45 H 0.151 0.849
46 H 0.155 0.845
47 H 0.169 0.831
48 H 0.214 0.786
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.366 11.666 31.990 34.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.120 4.120
3 H 0.091 0.909
4 C 0.034 3.966
5 N -0.355 5.355
6 C -0.369 4.369
7 H 0.094 0.906
8 C -0.261 4.261
9 N -0.597 5.597
10 Si 0.808 3.192
11 H -0.194 1.194
12 H -0.219 1.219
13 H -0.215 1.215
14 C 0.008 3.992
15 C -0.098 4.098
16 H 0.095 0.905
17 C -0.138 4.138
18 C 0.000 4.000
19 N -0.360 5.360
20 C 0.344 3.656
21 O -0.471 6.471
22 C -0.142 4.142
23 C -0.133 4.133
24 C -0.100 4.100
25 C -0.108 4.108
26 C -0.256 4.256
27 C -0.052 4.052
28 N -0.192 5.192
29 H 0.268 0.732
30 C -0.048 4.048
31 C -0.094 4.094
32 H 0.066 0.934
33 H 0.100 0.900
34 H 0.069 0.931
35 H 0.087 0.913
36 H -0.001 1.001
37 H 0.057 0.943
38 H 0.027 0.973
39 H 0.044 0.956
40 H 0.094 0.906
41 H 0.119 0.881
42 H 0.082 0.918
43 H 0.067 0.933
44 H 0.255 0.745
45 H 0.169 0.831
46 H 0.172 0.828
47 H 0.186 0.814
48 H 0.230 0.770
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -3.112 10.691 31.894 33.782
hybrid contribution 0.914 -0.978 -1.084 1.722
sum -2.198 9.713 30.810 32.379
Atomic orbital electron populations
1.21596 0.92948 1.01639 1.02246 1.22473 0.96539 0.98479 0.94490
0.90859 1.21790 0.83521 0.94813 0.96429 1.44863 1.10555 1.78915
1.01175 1.19486 0.91829 1.37361 0.88186 0.90634 1.25631 0.99828
1.02579 0.98042 1.70076 1.24039 1.54905 1.10713 0.84991 0.78583
0.77032 0.78616 1.19400 1.21915 1.21469 1.21580 0.96757 0.96927
0.83939 1.22051 0.95162 0.98252 0.94340 0.90536 1.21642 1.03517
0.97480 0.91143 1.21325 1.00975 0.93571 0.84103 1.45783 1.68817
1.13035 1.08356 1.18546 0.76035 0.87070 0.83914 1.90752 1.52712
1.17642 1.85987 1.19452 1.07652 0.94659 0.92434 1.20955 1.00892
0.91081 1.00338 1.20514 0.98414 1.01035 0.90075 1.19896 1.02671
0.92376 0.95858 1.22104 1.12217 1.00653 0.90655 1.22637 0.99784
0.83515 0.99259 1.41944 1.59392 1.11339 1.06505 0.73218 1.18175
1.05004 0.95219 0.86412 1.20095 0.99937 0.99250 0.90108 0.93423
0.90002 0.93054 0.91291 1.00055 0.94350 0.97264 0.95605 0.90601
0.88147 0.91819 0.93287 0.74535 0.83099 0.82765 0.81387 0.76968
0.86034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.59 9.30 71.98 0.67 -2.92 16
2 C -0.10 -3.58 3.09 -9.40 -0.03 -3.61 16
3 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16
4 C 0.16 8.01 5.36 86.86 0.47 8.47 16
5 N -0.63 -33.80 3.39 -691.95 -2.35 -36.15 16
6 C -0.24 -14.03 10.27 84.04 0.86 -13.17 16
7 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16
8 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16
9 N -0.95 -57.81 10.09 21.65 0.22 -57.59 16
10 Si 0.98 47.12 29.55 68.60 2.03 49.14 16
11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
12 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16
13 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16
14 C 0.13 5.71 6.25 86.73 0.54 6.25 16
15 C -0.08 -2.56 2.38 -9.60 -0.02 -2.58 16
16 H 0.08 2.46 8.02 -2.39 -0.02 2.44 16
17 C -0.10 -2.32 4.74 30.59 0.14 -2.17 16
18 C 0.12 3.14 5.56 86.38 0.48 3.62 16
19 N -0.71 -15.34 5.50 -466.23 -2.57 -17.90 16
20 C 0.56 15.01 7.76 86.71 0.67 15.69 16
21 O -0.59 -21.04 16.31 -3.98 -0.06 -21.11 16
22 C -0.14 -3.06 5.87 -20.07 -0.12 -3.18 16
23 C -0.11 -1.81 9.46 22.28 0.21 -1.60 16
24 C -0.08 -1.20 10.03 22.20 0.22 -0.98 16
25 C -0.10 -1.70 6.37 -20.14 -0.13 -1.83 16
26 C -0.23 -2.57 11.08 23.49 0.26 -2.31 16
27 C 0.08 0.57 11.81 83.09 0.98 1.55 16
28 N -0.59 -6.54 6.07 -187.71 -1.14 -7.68 16
29 H 0.43 2.57 8.96 -92.71 -0.83 1.74 16
30 C 0.06 1.07 7.26 38.96 0.28 1.35 16
31 C -0.07 -1.60 9.61 22.63 0.22 -1.38 16
32 H 0.05 1.38 8.11 -2.39 -0.02 1.36 16
33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16
34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16
36 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16
37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
38 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16
39 H 0.03 1.09 7.70 -2.39 -0.02 1.07 16
40 H 0.08 1.74 7.95 -2.38 -0.02 1.73 16
41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
43 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16
44 H 0.42 6.04 6.46 -92.71 -0.60 5.44 16
45 H 0.15 1.51 6.36 -2.91 -0.02 1.49 16
46 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16
47 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16
48 H 0.21 -0.29 8.06 -2.91 -0.02 -0.31 16
49 H 0.12 2.84 7.62 -2.91 -0.02 2.82 16
Total: -1.00 -81.23 395.79 1.85 -79.38
By element:
Atomic # 1 Polarization: 14.71 SS G_CDS: -0.46 Total: 14.25 kcal
Atomic # 6 Polarization: -8.52 SS G_CDS: 6.18 Total: -2.34 kcal
Atomic # 7 Polarization: -113.49 SS G_CDS: -5.83 Total: -119.32 kcal
Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.11 kcal
Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal
Total: -81.23 1.85 -79.38 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103470644.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.858 kcal
(2) G-P(sol) polarization free energy of solvation -81.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds