Wall clock time and date at job start Sat Apr 11 2020 06:24:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.49728 * 2 1
4 4 C 1.53189 * 109.49951 * 239.93766 * 2 1 3
5 5 N 1.46926 * 108.77694 * 185.41245 * 4 2 1
6 6 C 1.34777 * 120.63318 * 233.63057 * 5 4 2
7 7 O 1.21617 * 119.99968 * 355.78808 * 6 5 4
8 8 C 1.47371 * 120.00497 * 175.78665 * 6 5 4
9 9 C 1.39327 * 120.34435 * 54.14393 * 8 6 5
10 10 C 1.38268 * 120.19970 * 179.97438 * 9 8 6
11 11 C 1.38052 * 120.88670 * 0.02668 * 10 9 8
12 12 C 1.38984 * 120.26683 * 359.97438 * 11 10 9
13 13 N 1.37802 * 133.37037 * 179.97438 * 12 11 10
14 14 H 0.97004 * 125.07511 * 359.97438 * 13 12 11
15 15 C 1.36550 * 109.84796 * 179.21634 * 13 12 11
16 16 C 1.34555 * 109.89806 * 0.69525 * 15 13 12
17 17 C 1.40662 * 119.51962 * 359.70431 * 12 11 10
18 18 C 1.46920 * 118.74016 * 53.60470 * 5 4 2
19 19 C 1.53193 * 108.77766 * 306.39690 * 18 5 4
20 20 C 1.53028 * 109.49864 * 120.06295 * 2 1 3
21 21 H 1.09006 * 109.43191 * 61.28012 * 20 2 1
22 22 C 1.53002 * 109.48881 * 301.32470 * 20 2 1
23 23 N 1.46498 * 109.47137 * 174.91080 * 22 20 2
24 24 C 1.36938 * 119.99892 * 180.02562 * 23 22 20
25 25 H 1.08009 * 120.00007 * 359.97438 * 24 23 22
26 26 C 1.38817 * 120.00414 * 180.02562 * 24 23 22
27 27 N 1.31610 * 119.99988 * 179.97438 * 26 24 23
28 28 Si 1.86801 * 119.99630 * 359.97438 * 26 24 23
29 29 H 1.48502 * 109.47040 * 90.00004 * 28 26 24
30 30 H 1.48490 * 109.47207 * 210.00184 * 28 26 24
31 31 H 1.48500 * 109.47048 * 330.00355 * 28 26 24
32 32 H 1.08993 * 109.46864 * 180.02562 * 1 2 3
33 33 H 1.08993 * 109.47534 * 300.06372 * 1 2 3
34 34 H 1.09001 * 109.46719 * 60.06586 * 1 2 3
35 35 H 1.08999 * 109.59087 * 65.62541 * 4 2 1
36 36 H 1.09000 * 109.58592 * 305.20370 * 4 2 1
37 37 H 1.07995 * 119.89436 * 0.02562 * 9 8 6
38 38 H 1.07999 * 119.55539 * 180.02562 * 10 9 8
39 39 H 1.07997 * 119.86413 * 180.02562 * 11 10 9
40 40 H 1.08002 * 125.05035 * 180.09144 * 15 13 12
41 41 H 1.07994 * 126.49883 * 179.43121 * 16 15 13
42 42 H 1.08995 * 109.58996 * 186.60508 * 18 5 4
43 43 H 1.09008 * 109.70333 * 66.24980 * 18 5 4
44 44 H 1.09000 * 109.50131 * 174.58395 * 19 18 5
45 45 H 1.08997 * 109.49472 * 294.64718 * 19 18 5
46 46 H 1.08998 * 109.46868 * 294.91586 * 22 20 2
47 47 H 1.08997 * 109.46931 * 54.91244 * 22 20 2
48 48 H 0.97002 * 120.00275 * 0.02562 * 23 22 20
49 49 H 0.97005 * 119.99578 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2498
5 7 3.5046 -0.8287 -1.1698
6 6 4.2812 -0.3848 -2.1780
7 8 3.7710 0.0380 -3.1978
8 6 5.7486 -0.4118 -2.0447
9 6 6.4040 -1.5968 -1.7168
10 6 7.7809 -1.6187 -1.5930
11 6 8.5285 -0.4750 -1.7900
12 6 7.9038 0.7224 -2.1181
13 7 8.3693 1.9950 -2.3685
14 1 9.3017 2.2616 -2.3479
15 6 7.3234 2.8209 -2.6664
16 6 6.1671 2.1354 -2.6066
17 6 6.5043 0.7593 -2.2543
18 6 4.1053 -1.4265 0.0303
19 6 3.5708 -0.6953 1.2658
20 6 2.0408 -0.7226 1.2485
21 1 1.6962 -1.7567 1.2354
22 6 1.5043 -0.0227 2.4988
23 7 1.8922 -0.7838 3.6889
24 6 1.5210 -0.3465 4.9323
25 1 0.9426 0.5597 5.0357
26 6 1.8890 -1.0674 6.0602
27 7 1.5326 -0.6467 7.2552
28 14 2.8901 -2.6343 5.8815
29 1 4.3374 -2.3047 5.9245
30 1 2.5604 -3.5618 6.9933
31 1 2.5683 -3.2821 4.5845
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3634 0.5148 0.8893
34 1 -0.3633 0.5128 -0.8906
35 1 1.7638 -0.1573 -2.1389
36 1 1.6052 -1.7211 -1.2986
37 1 5.8347 -2.5009 -1.5596
38 1 8.2783 -2.5431 -1.3388
39 1 9.6032 -0.5111 -1.6895
40 1 7.4105 3.8708 -2.9043
41 1 5.1773 2.5286 -2.7851
42 1 5.1896 -1.3244 -0.0141
43 1 3.8398 -2.4822 0.0873
44 1 3.9334 -1.1902 2.1668
45 1 3.9163 0.3384 1.2545
46 1 1.9204 0.9829 2.5589
47 1 0.4173 0.0366 2.4438
48 1 2.4121 -1.5975 3.5961
49 1 1.7895 -1.1507 8.0433
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185179525.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:28
Heat of formation + Delta-G solvation = 37.923205 kcal
Electronic energy + Delta-G solvation = -29944.924102 eV
Core-core repulsion = 26065.489326 eV
Total energy + Delta-G solvation = -3879.434776 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.60097 -40.21164 -38.08973 -36.94309 -35.07400 -33.65283 -32.27906 -31.93646
-30.65815 -29.88455 -29.19140 -27.16669 -26.68361 -24.31522 -23.16021 -22.47875
-22.01568 -21.42425 -21.00780 -20.13426 -19.44469 -17.98065 -17.56845 -17.10061
-16.31054 -15.91939 -15.53542 -15.27190 -14.84555 -14.66281 -14.48587 -14.20459
-14.15231 -14.01734 -13.41994 -13.28670 -13.21214 -12.99503 -12.94233 -12.74464
-12.45214 -12.08966 -11.99432 -11.88750 -11.74524 -11.69901 -11.52823 -11.30514
-10.93232 -10.85999 -10.46822 -10.36097 -10.10606 -10.07664 -9.99869 -9.70137
-9.56294 -8.86875 -8.61394 -8.51585 -7.96416 -7.19371 -5.75247 -3.09952
0.58055 1.29157 2.43423 2.61826 2.83760 2.96740 3.36908 3.38859
3.45085 3.61666 4.28187 4.50566 4.59924 4.64093 4.76445 4.84454
4.86817 4.89611 4.98638 5.05835 5.10146 5.27729 5.28706 5.40674
5.45408 5.50062 5.55668 5.62049 5.65247 5.75951 5.77923 5.79399
5.84749 5.87668 5.95055 6.10360 6.16360 6.18418 6.23539 6.26513
6.35314 6.40501 6.43438 6.46110 6.54421 6.77541 6.80256 6.86344
7.20506 7.35546 8.02020 8.11237 8.44089 9.23694 9.96067 10.16403
11.43505
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.011813 B = 0.003091 C = 0.002777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2369.638684 B = 9056.551616 C =10081.123600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.096 4.096
3 H 0.074 0.926
4 C 0.118 3.882
5 N -0.601 5.601
6 C 0.564 3.436
7 O -0.538 6.538
8 C -0.076 4.076
9 C -0.114 4.114
10 C -0.104 4.104
11 C -0.111 4.111
12 C 0.091 3.909
13 N -0.596 5.596
14 H 0.416 0.584
15 C 0.054 3.946
16 C -0.195 4.195
17 C -0.066 4.066
18 C 0.096 3.904
19 C -0.127 4.127
20 C -0.093 4.093
21 H 0.071 0.929
22 C 0.161 3.839
23 N -0.755 5.755
24 C -0.241 4.241
25 H 0.089 0.911
26 C 0.003 3.997
27 N -0.936 5.936
28 Si 0.883 3.117
29 H -0.284 1.284
30 H -0.291 1.291
31 H -0.277 1.277
32 H 0.056 0.944
33 H 0.069 0.931
34 H 0.052 0.948
35 H 0.091 0.909
36 H 0.067 0.933
37 H 0.130 0.870
38 H 0.132 0.868
39 H 0.123 0.877
40 H 0.173 0.827
41 H 0.148 0.852
42 H 0.092 0.908
43 H 0.070 0.930
44 H 0.081 0.919
45 H 0.068 0.932
46 H 0.025 0.975
47 H 0.032 0.968
48 H 0.360 0.640
49 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.792 1.385 -22.952 26.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.116 4.116
3 H 0.093 0.907
4 C -0.004 4.004
5 N -0.333 5.333
6 C 0.353 3.647
7 O -0.416 6.416
8 C -0.079 4.079
9 C -0.134 4.134
10 C -0.123 4.123
11 C -0.132 4.132
12 C -0.016 4.016
13 N -0.199 5.199
14 H 0.253 0.747
15 C -0.072 4.072
16 C -0.220 4.220
17 C -0.072 4.072
18 C -0.027 4.027
19 C -0.165 4.165
20 C -0.112 4.112
21 H 0.090 0.910
22 C 0.034 3.966
23 N -0.401 5.401
24 C -0.371 4.371
25 H 0.107 0.893
26 C -0.193 4.193
27 N -0.584 5.584
28 Si 0.714 3.286
29 H -0.211 1.211
30 H -0.218 1.218
31 H -0.203 1.203
32 H 0.075 0.925
33 H 0.088 0.912
34 H 0.071 0.929
35 H 0.109 0.891
36 H 0.086 0.914
37 H 0.148 0.852
38 H 0.150 0.850
39 H 0.141 0.859
40 H 0.190 0.810
41 H 0.166 0.834
42 H 0.111 0.889
43 H 0.088 0.912
44 H 0.099 0.901
45 H 0.087 0.913
46 H 0.043 0.957
47 H 0.050 0.950
48 H 0.192 0.808
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 13.506 1.823 -23.312 27.003
hybrid contribution 1.193 -1.004 0.232 1.576
sum 14.699 0.819 -23.079 27.375
Atomic orbital electron populations
1.21835 0.94232 1.02214 1.02221 1.21441 0.96185 1.00022 0.93940
0.90714 1.21718 0.78515 1.00947 0.99203 1.48054 1.06938 1.60225
1.18088 1.18226 0.86446 0.77032 0.83017 1.90776 1.75017 1.47069
1.28712 1.19217 0.92524 0.93397 1.02796 1.21077 0.94782 0.96864
1.00674 1.20704 0.93329 0.97661 1.00634 1.20137 0.99616 0.90089
1.03379 1.18142 0.93077 0.86424 1.03980 1.41723 1.09243 1.07147
1.61806 0.74668 1.21905 0.86385 0.96436 1.02477 1.21748 0.98398
0.91729 1.10120 1.18893 0.91574 0.93486 1.03217 1.22112 0.99217
0.97107 0.84231 1.21940 0.96024 1.01521 0.97005 1.21398 0.94736
1.00204 0.94874 0.91035 1.20735 0.97194 0.94101 0.84586 1.42731
1.66360 1.28382 1.02624 1.19074 1.28397 1.07724 0.81918 0.89305
1.24670 1.00811 0.98690 0.95116 1.69702 1.51057 1.40609 0.97040
0.86560 0.80620 0.84530 0.76937 1.21078 1.21771 1.20310 0.92517
0.91184 0.92879 0.89107 0.91446 0.85204 0.84990 0.85902 0.80956
0.83408 0.88942 0.91175 0.90092 0.91347 0.95708 0.94993 0.80752
0.93114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.74 8.82 37.16 0.33 -1.41 16
2 C -0.10 -1.23 2.41 -90.51 -0.22 -1.45 16
3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
4 C 0.12 1.47 5.71 -3.71 -0.02 1.44 16
5 N -0.60 -7.76 2.97 -174.06 -0.52 -8.28 16
6 C 0.56 8.15 7.10 -12.54 -0.09 8.06 16
7 O -0.54 -9.29 16.51 5.26 0.09 -9.20 16
8 C -0.08 -0.97 4.91 -104.75 -0.51 -1.49 16
9 C -0.11 -1.18 7.42 -39.17 -0.29 -1.47 16
10 C -0.10 -0.90 9.99 -39.64 -0.40 -1.30 16
11 C -0.11 -0.97 10.05 -39.37 -0.40 -1.37 16
12 C 0.09 0.94 7.27 -83.99 -0.61 0.33 16
13 N -0.60 -4.60 6.06 -10.65 -0.06 -4.67 16
14 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16
15 C 0.05 0.44 11.82 -16.75 -0.20 0.25 16
16 C -0.20 -2.25 10.95 -37.78 -0.41 -2.67 16
17 C -0.07 -0.84 6.16 -104.85 -0.65 -1.49 16
18 C 0.10 1.13 5.53 -3.71 -0.02 1.11 16
19 C -0.13 -1.79 5.25 -26.61 -0.14 -1.93 16
20 C -0.09 -1.38 1.73 -90.58 -0.16 -1.54 16
21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
22 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16
23 N -0.76 -17.69 5.12 -59.91 -0.31 -18.00 16
24 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16
25 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16
26 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16
27 N -0.94 -29.50 13.97 55.49 0.78 -28.72 16
28 Si 0.88 21.89 27.74 -169.99 -4.71 17.18 16
29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
30 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
31 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16
34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.09 1.19 7.03 -51.93 -0.36 0.82 16
36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
37 H 0.13 1.15 7.36 -52.49 -0.39 0.76 16
38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16
39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16
40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16
41 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16
42 H 0.09 1.02 4.73 -51.93 -0.25 0.78 16
43 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16
44 H 0.08 1.24 7.15 -51.93 -0.37 0.87 16
45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16
48 H 0.36 8.14 4.71 -40.82 -0.19 7.95 16
49 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
LS Contribution 385.72 15.07 5.81 5.81
Total: -1.00 -35.61 385.72 -10.22 -45.83
By element:
Atomic # 1 Polarization: 16.18 SS G_CDS: -7.24 Total: 8.95 kcal
Atomic # 6 Polarization: -4.84 SS G_CDS: -4.06 Total: -8.90 kcal
Atomic # 7 Polarization: -59.55 SS G_CDS: -0.11 Total: -59.67 kcal
Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -35.61 -10.22 -45.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185179525.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.756 kcal
(2) G-P(sol) polarization free energy of solvation -35.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds