Wall clock time and date at job start Sat Apr 11 2020 06:24:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.49728 * 2 1
4 4 C 1.53189 * 109.49951 * 239.93766 * 2 1 3
5 5 N 1.46926 * 108.77694 * 185.41245 * 4 2 1
6 6 C 1.34777 * 120.63318 * 233.63057 * 5 4 2
7 7 O 1.21617 * 119.99968 * 355.78808 * 6 5 4
8 8 C 1.47371 * 120.00497 * 175.78665 * 6 5 4
9 9 C 1.39327 * 120.34435 * 54.14393 * 8 6 5
10 10 C 1.38268 * 120.19970 * 179.97438 * 9 8 6
11 11 C 1.38052 * 120.88670 * 0.02668 * 10 9 8
12 12 C 1.38984 * 120.26683 * 359.97438 * 11 10 9
13 13 N 1.37802 * 133.37037 * 179.97438 * 12 11 10
14 14 H 0.97004 * 125.07511 * 359.97438 * 13 12 11
15 15 C 1.36550 * 109.84796 * 179.21634 * 13 12 11
16 16 C 1.34555 * 109.89806 * 0.69525 * 15 13 12
17 17 C 1.40662 * 119.51962 * 359.70431 * 12 11 10
18 18 C 1.46920 * 118.74016 * 53.60470 * 5 4 2
19 19 C 1.53193 * 108.77766 * 306.39690 * 18 5 4
20 20 C 1.53028 * 109.49864 * 120.06295 * 2 1 3
21 21 H 1.09006 * 109.43191 * 61.28012 * 20 2 1
22 22 C 1.53002 * 109.48881 * 301.32470 * 20 2 1
23 23 N 1.46498 * 109.47137 * 174.91080 * 22 20 2
24 24 C 1.36938 * 119.99892 * 180.02562 * 23 22 20
25 25 H 1.08009 * 120.00007 * 359.97438 * 24 23 22
26 26 C 1.38817 * 120.00414 * 180.02562 * 24 23 22
27 27 N 1.31610 * 119.99988 * 179.97438 * 26 24 23
28 28 Si 1.86801 * 119.99630 * 359.97438 * 26 24 23
29 29 H 1.48502 * 109.47040 * 90.00004 * 28 26 24
30 30 H 1.48490 * 109.47207 * 210.00184 * 28 26 24
31 31 H 1.48500 * 109.47048 * 330.00355 * 28 26 24
32 32 H 1.08993 * 109.46864 * 180.02562 * 1 2 3
33 33 H 1.08993 * 109.47534 * 300.06372 * 1 2 3
34 34 H 1.09001 * 109.46719 * 60.06586 * 1 2 3
35 35 H 1.08999 * 109.59087 * 65.62541 * 4 2 1
36 36 H 1.09000 * 109.58592 * 305.20370 * 4 2 1
37 37 H 1.07995 * 119.89436 * 0.02562 * 9 8 6
38 38 H 1.07999 * 119.55539 * 180.02562 * 10 9 8
39 39 H 1.07997 * 119.86413 * 180.02562 * 11 10 9
40 40 H 1.08002 * 125.05035 * 180.09144 * 15 13 12
41 41 H 1.07994 * 126.49883 * 179.43121 * 16 15 13
42 42 H 1.08995 * 109.58996 * 186.60508 * 18 5 4
43 43 H 1.09008 * 109.70333 * 66.24980 * 18 5 4
44 44 H 1.09000 * 109.50131 * 174.58395 * 19 18 5
45 45 H 1.08997 * 109.49472 * 294.64718 * 19 18 5
46 46 H 1.08998 * 109.46868 * 294.91586 * 22 20 2
47 47 H 1.08997 * 109.46931 * 54.91244 * 22 20 2
48 48 H 0.97002 * 120.00275 * 0.02562 * 23 22 20
49 49 H 0.97005 * 119.99578 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2498
5 7 3.5046 -0.8287 -1.1698
6 6 4.2812 -0.3848 -2.1780
7 8 3.7710 0.0380 -3.1978
8 6 5.7486 -0.4118 -2.0447
9 6 6.4040 -1.5968 -1.7168
10 6 7.7809 -1.6187 -1.5930
11 6 8.5285 -0.4750 -1.7900
12 6 7.9038 0.7224 -2.1181
13 7 8.3693 1.9950 -2.3685
14 1 9.3017 2.2616 -2.3479
15 6 7.3234 2.8209 -2.6664
16 6 6.1671 2.1354 -2.6066
17 6 6.5043 0.7593 -2.2543
18 6 4.1053 -1.4265 0.0303
19 6 3.5708 -0.6953 1.2658
20 6 2.0408 -0.7226 1.2485
21 1 1.6962 -1.7567 1.2354
22 6 1.5043 -0.0227 2.4988
23 7 1.8922 -0.7838 3.6889
24 6 1.5210 -0.3465 4.9323
25 1 0.9426 0.5597 5.0357
26 6 1.8890 -1.0674 6.0602
27 7 1.5326 -0.6467 7.2552
28 14 2.8901 -2.6343 5.8815
29 1 4.3374 -2.3047 5.9245
30 1 2.5604 -3.5618 6.9933
31 1 2.5683 -3.2821 4.5845
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3634 0.5148 0.8893
34 1 -0.3633 0.5128 -0.8906
35 1 1.7638 -0.1573 -2.1389
36 1 1.6052 -1.7211 -1.2986
37 1 5.8347 -2.5009 -1.5596
38 1 8.2783 -2.5431 -1.3388
39 1 9.6032 -0.5111 -1.6895
40 1 7.4105 3.8708 -2.9043
41 1 5.1773 2.5286 -2.7851
42 1 5.1896 -1.3244 -0.0141
43 1 3.8398 -2.4822 0.0873
44 1 3.9334 -1.1902 2.1668
45 1 3.9163 0.3384 1.2545
46 1 1.9204 0.9829 2.5589
47 1 0.4173 0.0366 2.4438
48 1 2.4121 -1.5975 3.5961
49 1 1.7895 -1.1507 8.0433
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185179525.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:27
Heat of formation + Delta-G solvation = 15.278845 kcal
Electronic energy + Delta-G solvation = -29945.906035 eV
Core-core repulsion = 26065.489326 eV
Total energy + Delta-G solvation = -3880.416709 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.34158 -41.22503 -39.26355 -37.70674 -36.66945 -35.00732 -33.66098 -32.91521
-32.33538 -30.63531 -29.92012 -28.64338 -27.65631 -25.61428 -24.50157 -23.57995
-22.84230 -22.63591 -22.00997 -21.19803 -20.46181 -19.61858 -18.80775 -17.96785
-17.24393 -16.77834 -16.61894 -16.41672 -16.22011 -15.84235 -15.60518 -15.38467
-15.16742 -15.03400 -14.85783 -14.56528 -14.41579 -14.11222 -14.02431 -13.85787
-13.55553 -13.25749 -13.16877 -13.01257 -12.86430 -12.72888 -12.65404 -12.47809
-12.38328 -12.15512 -11.97842 -11.84086 -11.65159 -11.45720 -11.25267 -10.96592
-10.88374 -10.64210 -9.68647 -9.26220 -9.22640 -8.68783 -8.00965 -5.34428
-0.17300 0.57692 1.39082 1.44047 1.51487 1.53554 1.76960 2.00289
2.23918 2.50894 2.84287 3.30389 3.40580 3.53606 3.71889 3.80736
3.88184 3.96675 4.04082 4.06161 4.18162 4.25470 4.30865 4.39056
4.40116 4.49052 4.60879 4.62699 4.66997 4.72549 4.79536 4.81976
4.85763 4.91571 4.98968 5.04925 5.06875 5.09311 5.19420 5.24420
5.35681 5.40267 5.46010 5.49210 5.58517 5.66910 5.68089 5.77386
6.09708 6.22829 6.33098 6.69742 7.06916 7.10108 7.85723 8.06989
9.20944
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.011813 B = 0.003091 C = 0.002777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2369.638684 B = 9056.551616 C =10081.123600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.087 4.087
3 H 0.060 0.940
4 C 0.121 3.879
5 N -0.599 5.599
6 C 0.563 3.437
7 O -0.579 6.579
8 C -0.112 4.112
9 C -0.111 4.111
10 C -0.108 4.108
11 C -0.103 4.103
12 C 0.074 3.926
13 N -0.582 5.582
14 H 0.435 0.565
15 C 0.082 3.918
16 C -0.248 4.248
17 C -0.097 4.097
18 C 0.102 3.898
19 C -0.124 4.124
20 C -0.082 4.082
21 H 0.082 0.918
22 C 0.160 3.840
23 N -0.754 5.754
24 C -0.236 4.236
25 H 0.051 0.949
26 C -0.066 4.066
27 N -0.987 5.987
28 Si 0.957 3.043
29 H -0.275 1.275
30 H -0.297 1.297
31 H -0.245 1.245
32 H 0.066 0.934
33 H 0.055 0.945
34 H 0.067 0.933
35 H 0.081 0.919
36 H 0.086 0.914
37 H 0.144 0.856
38 H 0.165 0.835
39 H 0.155 0.845
40 H 0.212 0.788
41 H 0.129 0.871
42 H 0.103 0.897
43 H 0.093 0.907
44 H 0.074 0.926
45 H 0.052 0.948
46 H 0.011 0.989
47 H 0.031 0.969
48 H 0.367 0.633
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.622 -0.681 -24.426 29.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.107 4.107
3 H 0.079 0.921
4 C -0.001 4.001
5 N -0.330 5.330
6 C 0.353 3.647
7 O -0.460 6.460
8 C -0.115 4.115
9 C -0.130 4.130
10 C -0.127 4.127
11 C -0.123 4.123
12 C -0.033 4.033
13 N -0.187 5.187
14 H 0.275 0.725
15 C -0.045 4.045
16 C -0.273 4.273
17 C -0.103 4.103
18 C -0.019 4.019
19 C -0.162 4.162
20 C -0.101 4.101
21 H 0.100 0.900
22 C 0.034 3.966
23 N -0.400 5.400
24 C -0.367 4.367
25 H 0.069 0.931
26 C -0.258 4.258
27 N -0.638 5.638
28 Si 0.783 3.217
29 H -0.201 1.201
30 H -0.224 1.224
31 H -0.170 1.170
32 H 0.085 0.915
33 H 0.074 0.926
34 H 0.086 0.914
35 H 0.100 0.900
36 H 0.104 0.896
37 H 0.161 0.839
38 H 0.182 0.818
39 H 0.173 0.827
40 H 0.228 0.772
41 H 0.147 0.853
42 H 0.121 0.879
43 H 0.112 0.888
44 H 0.092 0.908
45 H 0.071 0.929
46 H 0.030 0.970
47 H 0.049 0.951
48 H 0.201 0.799
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 16.361 -0.245 -24.821 29.729
hybrid contribution 0.305 -0.198 0.682 0.773
sum 16.667 -0.443 -24.139 29.337
Atomic orbital electron populations
1.21804 0.93252 1.02886 1.02258 1.21333 0.96933 0.99065 0.93342
0.92145 1.21708 0.78545 1.01665 0.98201 1.48122 1.07045 1.59799
1.18072 1.18601 0.87449 0.76105 0.82585 1.90734 1.75946 1.48919
1.30351 1.19252 0.91500 0.94822 1.05941 1.21328 0.95857 0.96288
0.99571 1.21106 0.92646 0.99002 0.99952 1.20586 1.01281 0.89242
1.01198 1.18400 0.92349 0.87865 1.04670 1.41757 1.10127 1.06273
1.60528 0.72465 1.22398 0.85344 0.97648 0.99143 1.21793 0.99006
0.92598 1.13944 1.19251 0.93147 0.93863 1.04001 1.22155 0.99745
0.97690 0.82357 1.21884 0.95357 1.00977 0.98008 1.21291 0.95254
1.00247 0.93299 0.89999 1.20858 0.97198 0.93559 0.85014 1.42674
1.66290 1.28935 1.02091 1.19032 1.27146 1.06337 0.84165 0.93116
1.25566 1.02713 1.02971 0.94509 1.69901 1.53135 1.42618 0.98096
0.85384 0.78825 0.79474 0.78031 1.20078 1.22361 1.16965 0.91490
0.92601 0.91414 0.90019 0.89563 0.83866 0.81794 0.82695 0.77161
0.85348 0.87912 0.88840 0.90753 0.92893 0.97046 0.95079 0.79864
0.93352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.28 8.82 71.98 0.63 -2.65 16
2 C -0.09 -2.19 2.41 -10.72 -0.03 -2.21 16
3 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
4 C 0.12 2.89 5.71 86.36 0.49 3.38 16
5 N -0.60 -15.06 2.97 -822.85 -2.45 -17.51 16
6 C 0.56 16.52 7.10 86.65 0.62 17.14 16
7 O -0.58 -20.91 16.51 -4.08 -0.07 -20.98 16
8 C -0.11 -2.85 4.91 -19.95 -0.10 -2.95 16
9 C -0.11 -2.08 7.42 22.54 0.17 -1.91 16
10 C -0.11 -1.52 9.99 22.23 0.22 -1.30 16
11 C -0.10 -1.46 10.05 22.40 0.23 -1.23 16
12 C 0.07 1.40 7.27 38.98 0.28 1.69 16
13 N -0.58 -7.65 6.06 -187.62 -1.14 -8.79 16
14 H 0.43 2.33 8.96 -92.71 -0.83 1.50 16
15 C 0.08 1.24 11.82 83.11 0.98 2.22 16
16 C -0.25 -5.97 10.95 23.44 0.26 -5.71 16
17 C -0.10 -2.47 6.16 -20.01 -0.12 -2.59 16
18 C 0.10 2.22 5.53 86.36 0.48 2.70 16
19 C -0.12 -3.36 5.25 30.67 0.16 -3.19 16
20 C -0.08 -2.34 1.73 -10.77 -0.02 -2.36 16
21 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16
22 C 0.16 6.07 5.41 86.38 0.47 6.54 16
23 N -0.75 -34.90 5.12 -343.44 -1.76 -36.66 16
24 C -0.24 -13.61 10.47 84.03 0.88 -12.72 16
25 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16
26 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16
27 N -0.99 -63.75 13.97 21.65 0.30 -63.45 16
28 Si 0.96 44.57 27.74 68.60 1.90 46.48 16
29 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
30 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16
31 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16
32 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16
33 H 0.06 1.43 6.30 -2.39 -0.02 1.41 16
34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
35 H 0.08 2.15 7.03 -2.39 -0.02 2.13 16
36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
37 H 0.14 2.16 7.36 -2.91 -0.02 2.13 16
38 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16
39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16
40 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16
41 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16
42 H 0.10 2.07 4.73 -2.39 -0.01 2.06 16
43 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16
44 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16
45 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16
46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
47 H 0.03 1.21 6.14 -2.39 -0.01 1.19 16
48 H 0.37 15.83 4.71 -92.71 -0.44 15.39 16
49 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16
Total: -1.00 -81.36 385.72 2.52 -78.84
By element:
Atomic # 1 Polarization: 31.04 SS G_CDS: -0.35 Total: 30.69 kcal
Atomic # 6 Polarization: -14.69 SS G_CDS: 6.07 Total: -8.63 kcal
Atomic # 7 Polarization: -121.36 SS G_CDS: -5.04 Total: -126.40 kcal
Atomic # 8 Polarization: -20.91 SS G_CDS: -0.07 Total: -20.98 kcal
Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.48 kcal
Total: -81.36 2.52 -78.84 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185179525.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.122 kcal
(2) G-P(sol) polarization free energy of solvation -81.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds