Wall clock time and date at job start Sat Apr 11 2020 06:25:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09009 * 109.49497 * 2 1
4 4 C 1.52756 * 109.59035 * 240.04762 * 2 1 3
5 5 N 1.46921 * 109.00744 * 185.53369 * 4 2 1
6 6 C 1.34781 * 120.63406 * 233.58338 * 5 4 2
7 7 O 1.21595 * 119.99704 * 356.01676 * 6 5 4
8 8 C 1.47500 * 120.00304 * 176.02043 * 6 5 4
9 9 C 1.41197 * 126.37054 * 43.01996 * 8 6 5
10 10 C 1.37998 * 106.86117 * 179.89867 * 9 8 6
11 11 C 1.41384 * 131.98439 * 180.09728 * 10 9 8
12 12 C 1.35742 * 119.33366 * 180.30362 * 11 10 9
13 13 C 1.40829 * 119.71837 * 359.97438 * 12 11 10
14 14 C 1.34534 * 120.58259 * 0.02562 * 13 12 11
15 15 N 1.37441 * 120.74541 * 0.02562 * 14 13 12
16 16 C 1.35125 * 131.28483 * 180.02562 * 15 14 13
17 17 C 1.46927 * 118.73686 * 53.30873 * 5 4 2
18 18 C 1.53184 * 108.77898 * 306.64219 * 17 5 4
19 19 C 1.53038 * 109.49741 * 120.06321 * 2 1 3
20 20 H 1.08994 * 109.46253 * 61.32936 * 19 2 1
21 21 C 1.52998 * 109.46108 * 301.36999 * 19 2 1
22 22 N 1.46499 * 109.47100 * 174.93309 * 21 19 2
23 23 C 1.36939 * 120.00088 * 179.97438 * 22 21 19
24 24 H 1.08001 * 120.00237 * 0.02562 * 23 22 21
25 25 C 1.38815 * 120.00330 * 180.02562 * 23 22 21
26 26 N 1.31615 * 120.00111 * 180.02562 * 25 23 22
27 27 Si 1.86804 * 119.99467 * 359.97438 * 25 23 22
28 28 H 1.48500 * 109.46864 * 90.00344 * 27 25 23
29 29 H 1.48499 * 109.46845 * 210.00140 * 27 25 23
30 30 H 1.48494 * 109.47393 * 329.99891 * 27 25 23
31 31 H 1.09008 * 109.47249 * 299.93411 * 1 2 3
32 32 H 1.08994 * 109.47315 * 59.93553 * 1 2 3
33 33 H 1.08996 * 109.47259 * 179.97438 * 1 2 3
34 34 H 1.09005 * 109.51173 * 65.65004 * 4 2 1
35 35 H 1.08997 * 109.43123 * 305.36868 * 4 2 1
36 36 H 1.08001 * 126.56531 * 0.02562 * 9 8 6
37 37 H 1.08001 * 120.33799 * 0.27638 * 11 10 9
38 38 H 1.07995 * 120.14194 * 180.02562 * 12 11 10
39 39 H 1.08002 * 119.70747 * 180.02562 * 13 12 11
40 40 H 1.08006 * 119.63034 * 180.02562 * 14 13 12
41 41 H 1.07999 * 125.61410 * 0.02562 * 16 15 14
42 42 H 1.09000 * 109.58664 * 66.43652 * 17 5 4
43 43 H 1.09005 * 109.58335 * 186.85407 * 17 5 4
44 44 H 1.08993 * 109.50321 * 174.58799 * 18 17 5
45 45 H 1.09008 * 109.49820 * 294.65133 * 18 17 5
46 46 H 1.09006 * 109.47434 * 294.93447 * 21 19 2
47 47 H 1.08998 * 109.47348 * 54.93324 * 21 19 2
48 48 H 0.96998 * 120.00314 * 359.97438 * 22 21 19
49 49 H 0.97003 * 119.99599 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0276 0.0000
4 6 2.0422 -0.7185 -1.2469
5 7 3.5053 -0.8282 -1.1690
6 6 4.2819 -0.3844 -2.1771
7 8 3.7717 0.0459 -3.1935
8 6 5.7508 -0.4207 -2.0476
9 6 6.5189 -1.4817 -1.5203
10 6 7.8410 -1.0929 -1.5922
11 6 9.0395 -1.7421 -1.2164
12 6 10.2253 -1.1074 -1.3998
13 6 10.2464 0.1843 -1.9604
14 6 9.1015 0.7952 -2.3153
15 7 7.8889 0.1730 -2.1383
16 6 6.6298 0.5791 -2.4134
17 6 4.1059 -1.4254 0.0316
18 6 3.5709 -0.6939 1.2666
19 6 2.0408 -0.7227 1.2486
20 1 1.6973 -1.7570 1.2356
21 6 1.5031 -0.0230 2.4984
22 7 1.8911 -0.7834 3.6889
23 6 1.5198 -0.3456 4.9321
24 1 0.9405 0.5600 5.0350
25 6 1.8879 -1.0659 6.0603
26 7 1.5306 -0.6453 7.2551
27 14 2.8894 -2.6327 5.8823
28 1 4.3366 -2.3027 5.9252
29 1 2.5598 -3.5598 6.9945
30 1 2.5677 -3.2812 4.5857
31 1 -0.3634 0.5128 0.8906
32 1 -0.3633 0.5148 -0.8893
33 1 -0.3633 -1.0276 -0.0005
34 1 1.7652 -0.1497 -2.1345
35 1 1.6033 -1.7149 -1.2973
36 1 6.1436 -2.4188 -1.1365
37 1 9.0118 -2.7328 -0.7873
38 1 11.1486 -1.5913 -1.1178
39 1 11.1900 0.6890 -2.1066
40 1 9.1356 1.7859 -2.7443
41 1 6.3564 1.5286 -2.8492
42 1 3.8387 -2.4806 0.0876
43 1 5.1902 -1.3227 -0.0127
44 1 3.9334 -1.1882 2.1678
45 1 3.9159 0.3401 1.2550
46 1 1.9182 0.9831 2.5586
47 1 0.4161 0.0353 2.4429
48 1 2.4111 -1.5970 3.5965
49 1 1.7876 -1.1489 8.0434
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185245665.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:03
Heat of formation + Delta-G solvation = 56.371448 kcal
Electronic energy + Delta-G solvation = -29581.087406 eV
Core-core repulsion = 25702.452606 eV
Total energy + Delta-G solvation = -3878.634800 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.54914 -40.16847 -38.05745 -36.70693 -35.09805 -33.83189 -33.20790 -32.01175
-30.66388 -30.39792 -28.16108 -27.16620 -26.87993 -24.45932 -23.57046 -22.60845
-22.48033 -21.81071 -21.06941 -19.92923 -19.02235 -17.89298 -17.58907 -16.92760
-16.79814 -16.10461 -15.67293 -15.36421 -15.08184 -14.82239 -14.74811 -14.48477
-14.18461 -14.10949 -13.78773 -13.31797 -13.25278 -13.00213 -12.80768 -12.64387
-12.35597 -12.23769 -11.97745 -11.95893 -11.86816 -11.67889 -11.57368 -11.30290
-10.94698 -10.85652 -10.77413 -10.46387 -10.34358 -10.09098 -10.06565 -9.83827
-9.56395 -8.86979 -8.86719 -8.55232 -7.70254 -7.19443 -5.75377 -3.10091
0.43510 1.03204 1.98601 2.29068 2.90886 3.13632 3.23977 3.36813
3.38757 3.44935 4.13635 4.35459 4.45320 4.51892 4.59798 4.73359
4.78546 4.84958 4.88808 4.96582 5.07779 5.10235 5.17491 5.30956
5.41925 5.47411 5.49747 5.54307 5.56206 5.65503 5.74536 5.77619
5.78846 5.85478 5.89380 5.91933 5.95835 5.97152 6.18681 6.23567
6.27061 6.36284 6.42979 6.43631 6.52636 6.58151 6.77849 6.86421
6.90745 7.38991 8.01912 8.14969 8.44000 9.23603 9.95973 10.16318
11.43381
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.010407 B = 0.003069 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2689.826135 B = 9120.018733 C =11142.043323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.096 4.096
3 H 0.074 0.926
4 C 0.119 3.881
5 N -0.599 5.599
6 C 0.589 3.411
7 O -0.547 6.547
8 C -0.159 4.159
9 C -0.168 4.168
10 C 0.031 3.969
11 C -0.076 4.076
12 C -0.133 4.133
13 C -0.136 4.136
14 C 0.043 3.957
15 N -0.341 5.341
16 C 0.009 3.991
17 C 0.092 3.908
18 C -0.126 4.126
19 C -0.093 4.093
20 H 0.071 0.929
21 C 0.161 3.839
22 N -0.755 5.755
23 C -0.241 4.241
24 H 0.089 0.911
25 C 0.002 3.998
26 N -0.936 5.936
27 Si 0.883 3.117
28 H -0.284 1.284
29 H -0.291 1.291
30 H -0.277 1.277
31 H 0.069 0.931
32 H 0.052 0.948
33 H 0.056 0.944
34 H 0.090 0.910
35 H 0.067 0.933
36 H 0.155 0.845
37 H 0.144 0.856
38 H 0.134 0.866
39 H 0.146 0.854
40 H 0.162 0.838
41 H 0.178 0.822
42 H 0.068 0.932
43 H 0.100 0.900
44 H 0.080 0.920
45 H 0.067 0.933
46 H 0.025 0.975
47 H 0.032 0.968
48 H 0.360 0.640
49 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.795 -0.557 -22.546 27.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.116 4.116
3 H 0.092 0.908
4 C -0.003 4.003
5 N -0.330 5.330
6 C 0.378 3.622
7 O -0.426 6.426
8 C -0.167 4.167
9 C -0.192 4.192
10 C -0.073 4.073
11 C -0.095 4.095
12 C -0.154 4.154
13 C -0.156 4.156
14 C -0.075 4.075
15 N -0.004 5.004
16 C -0.124 4.124
17 C -0.030 4.030
18 C -0.165 4.165
19 C -0.112 4.112
20 H 0.090 0.910
21 C 0.034 3.966
22 N -0.401 5.401
23 C -0.371 4.371
24 H 0.107 0.893
25 C -0.193 4.193
26 N -0.584 5.584
27 Si 0.714 3.286
28 H -0.211 1.211
29 H -0.218 1.218
30 H -0.203 1.203
31 H 0.088 0.912
32 H 0.071 0.929
33 H 0.075 0.925
34 H 0.109 0.891
35 H 0.085 0.915
36 H 0.173 0.827
37 H 0.162 0.838
38 H 0.152 0.848
39 H 0.163 0.837
40 H 0.179 0.821
41 H 0.195 0.805
42 H 0.086 0.914
43 H 0.118 0.882
44 H 0.098 0.902
45 H 0.086 0.914
46 H 0.043 0.957
47 H 0.050 0.950
48 H 0.193 0.807
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 15.572 -0.007 -22.968 27.750
hybrid contribution 0.791 -1.104 0.229 1.377
sum 16.363 -1.110 -22.740 28.037
Atomic orbital electron populations
1.21837 0.94215 1.02223 1.02229 1.21367 0.96200 1.00038 0.94014
0.90764 1.21620 0.78549 1.00975 0.99185 1.47938 1.06820 1.60221
1.18062 1.17465 0.85214 0.76872 0.82670 1.90762 1.75093 1.47669
1.29050 1.19467 0.92903 0.96594 1.07699 1.21210 0.89707 1.00707
1.07552 1.18808 0.95418 0.86541 1.06513 1.20690 0.89656 1.00197
0.98927 1.20959 0.98337 0.95096 1.00968 1.20740 0.97371 0.96290
1.01247 1.21685 0.82845 0.99329 1.03684 1.41291 1.05515 1.13486
1.40140 1.21867 0.80200 1.01574 1.08802 1.22247 0.99799 0.96960
0.84040 1.21939 0.95957 1.01467 0.97108 1.21400 0.94806 1.00186
0.94837 0.91044 1.20739 0.97186 0.94098 0.84608 1.42733 1.66343
1.28405 1.02621 1.19072 1.28347 1.07749 0.81921 0.89312 1.24672
1.00820 0.98695 0.95121 1.69703 1.51035 1.40643 0.97040 0.86558
0.80610 0.84530 0.76939 1.21087 1.21769 1.20307 0.91186 0.92867
0.92508 0.89116 0.91498 0.82701 0.83845 0.84803 0.83670 0.82088
0.80478 0.91361 0.88178 0.90152 0.91430 0.95728 0.95005 0.80749
0.93114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.74 8.82 37.16 0.33 -1.41 16
2 C -0.10 -1.24 2.40 -90.72 -0.22 -1.45 16
3 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16
4 C 0.12 1.47 5.68 -3.94 -0.02 1.45 16
5 N -0.60 -7.71 2.98 -174.28 -0.52 -8.23 16
6 C 0.59 8.36 7.59 -12.48 -0.09 8.26 16
7 O -0.55 -9.30 16.52 5.28 0.09 -9.22 16
8 C -0.16 -1.96 5.33 -105.07 -0.56 -2.53 16
9 C -0.17 -1.81 8.50 -38.55 -0.33 -2.14 16
10 C 0.03 0.32 6.70 -84.00 -0.56 -0.24 16
11 C -0.08 -0.61 10.11 -39.28 -0.40 -1.00 16
12 C -0.13 -0.88 10.07 -39.50 -0.40 -1.27 16
13 C -0.14 -0.82 9.97 -39.91 -0.40 -1.22 16
14 C 0.04 0.30 10.89 -16.35 -0.18 0.13 16
15 N -0.34 -3.36 2.92 -60.42 -0.18 -3.54 16
16 C 0.01 0.09 11.56 -16.17 -0.19 -0.09 16
17 C 0.09 1.09 5.72 -3.71 -0.02 1.07 16
18 C -0.13 -1.78 5.25 -26.61 -0.14 -1.92 16
19 C -0.09 -1.38 1.73 -90.58 -0.16 -1.54 16
20 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
21 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16
22 N -0.76 -17.70 5.12 -59.91 -0.31 -18.01 16
23 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16
24 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16
25 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16
26 N -0.94 -29.52 13.97 55.49 0.78 -28.75 16
27 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16
28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
29 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16
30 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16
31 H 0.07 0.90 6.29 -51.92 -0.33 0.57 16
32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
34 H 0.09 1.18 7.03 -51.93 -0.36 0.82 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.16 1.42 7.13 -52.49 -0.37 1.04 16
37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16
38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16
39 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16
40 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16
41 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16
42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
43 H 0.10 1.11 4.14 -51.93 -0.22 0.89 16
44 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16
45 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16
46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16
48 H 0.36 8.15 4.71 -40.82 -0.19 7.96 16
49 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
LS Contribution 386.07 15.07 5.82 5.82
Total: -1.00 -35.21 386.07 -9.90 -45.11
By element:
Atomic # 1 Polarization: 14.78 SS G_CDS: -7.25 Total: 7.53 kcal
Atomic # 6 Polarization: -4.29 SS G_CDS: -3.61 Total: -7.90 kcal
Atomic # 7 Polarization: -58.30 SS G_CDS: -0.23 Total: -58.53 kcal
Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -35.21 -9.90 -45.11 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185245665.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.478 kcal
(2) G-P(sol) polarization free energy of solvation -35.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds