Wall clock time and date at job start Sat Apr 11 2020 06:25:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09009 * 109.49497 * 2 1
4 4 C 1.52756 * 109.59035 * 240.04762 * 2 1 3
5 5 N 1.46921 * 109.00744 * 185.53369 * 4 2 1
6 6 C 1.34781 * 120.63406 * 233.58338 * 5 4 2
7 7 O 1.21595 * 119.99704 * 356.01676 * 6 5 4
8 8 C 1.47500 * 120.00304 * 176.02043 * 6 5 4
9 9 C 1.41197 * 126.37054 * 43.01996 * 8 6 5
10 10 C 1.37998 * 106.86117 * 179.89867 * 9 8 6
11 11 C 1.41384 * 131.98439 * 180.09728 * 10 9 8
12 12 C 1.35742 * 119.33366 * 180.30362 * 11 10 9
13 13 C 1.40829 * 119.71837 * 359.97438 * 12 11 10
14 14 C 1.34534 * 120.58259 * 0.02562 * 13 12 11
15 15 N 1.37441 * 120.74541 * 0.02562 * 14 13 12
16 16 C 1.35125 * 131.28483 * 180.02562 * 15 14 13
17 17 C 1.46927 * 118.73686 * 53.30873 * 5 4 2
18 18 C 1.53184 * 108.77898 * 306.64219 * 17 5 4
19 19 C 1.53038 * 109.49741 * 120.06321 * 2 1 3
20 20 H 1.08994 * 109.46253 * 61.32936 * 19 2 1
21 21 C 1.52998 * 109.46108 * 301.36999 * 19 2 1
22 22 N 1.46499 * 109.47100 * 174.93309 * 21 19 2
23 23 C 1.36939 * 120.00088 * 179.97438 * 22 21 19
24 24 H 1.08001 * 120.00237 * 0.02562 * 23 22 21
25 25 C 1.38815 * 120.00330 * 180.02562 * 23 22 21
26 26 N 1.31615 * 120.00111 * 180.02562 * 25 23 22
27 27 Si 1.86804 * 119.99467 * 359.97438 * 25 23 22
28 28 H 1.48500 * 109.46864 * 90.00344 * 27 25 23
29 29 H 1.48499 * 109.46845 * 210.00140 * 27 25 23
30 30 H 1.48494 * 109.47393 * 329.99891 * 27 25 23
31 31 H 1.09008 * 109.47249 * 299.93411 * 1 2 3
32 32 H 1.08994 * 109.47315 * 59.93553 * 1 2 3
33 33 H 1.08996 * 109.47259 * 179.97438 * 1 2 3
34 34 H 1.09005 * 109.51173 * 65.65004 * 4 2 1
35 35 H 1.08997 * 109.43123 * 305.36868 * 4 2 1
36 36 H 1.08001 * 126.56531 * 0.02562 * 9 8 6
37 37 H 1.08001 * 120.33799 * 0.27638 * 11 10 9
38 38 H 1.07995 * 120.14194 * 180.02562 * 12 11 10
39 39 H 1.08002 * 119.70747 * 180.02562 * 13 12 11
40 40 H 1.08006 * 119.63034 * 180.02562 * 14 13 12
41 41 H 1.07999 * 125.61410 * 0.02562 * 16 15 14
42 42 H 1.09000 * 109.58664 * 66.43652 * 17 5 4
43 43 H 1.09005 * 109.58335 * 186.85407 * 17 5 4
44 44 H 1.08993 * 109.50321 * 174.58799 * 18 17 5
45 45 H 1.09008 * 109.49820 * 294.65133 * 18 17 5
46 46 H 1.09006 * 109.47434 * 294.93447 * 21 19 2
47 47 H 1.08998 * 109.47348 * 54.93324 * 21 19 2
48 48 H 0.96998 * 120.00314 * 359.97438 * 22 21 19
49 49 H 0.97003 * 119.99599 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0276 0.0000
4 6 2.0422 -0.7185 -1.2469
5 7 3.5053 -0.8282 -1.1690
6 6 4.2819 -0.3844 -2.1771
7 8 3.7717 0.0459 -3.1935
8 6 5.7508 -0.4207 -2.0476
9 6 6.5189 -1.4817 -1.5203
10 6 7.8410 -1.0929 -1.5922
11 6 9.0395 -1.7421 -1.2164
12 6 10.2253 -1.1074 -1.3998
13 6 10.2464 0.1843 -1.9604
14 6 9.1015 0.7952 -2.3153
15 7 7.8889 0.1730 -2.1383
16 6 6.6298 0.5791 -2.4134
17 6 4.1059 -1.4254 0.0316
18 6 3.5709 -0.6939 1.2666
19 6 2.0408 -0.7227 1.2486
20 1 1.6973 -1.7570 1.2356
21 6 1.5031 -0.0230 2.4984
22 7 1.8911 -0.7834 3.6889
23 6 1.5198 -0.3456 4.9321
24 1 0.9405 0.5600 5.0350
25 6 1.8879 -1.0659 6.0603
26 7 1.5306 -0.6453 7.2551
27 14 2.8894 -2.6327 5.8823
28 1 4.3366 -2.3027 5.9252
29 1 2.5598 -3.5598 6.9945
30 1 2.5677 -3.2812 4.5857
31 1 -0.3634 0.5128 0.8906
32 1 -0.3633 0.5148 -0.8893
33 1 -0.3633 -1.0276 -0.0005
34 1 1.7652 -0.1497 -2.1345
35 1 1.6033 -1.7149 -1.2973
36 1 6.1436 -2.4188 -1.1365
37 1 9.0118 -2.7328 -0.7873
38 1 11.1486 -1.5913 -1.1178
39 1 11.1900 0.6890 -2.1066
40 1 9.1356 1.7859 -2.7443
41 1 6.3564 1.5286 -2.8492
42 1 3.8387 -2.4806 0.0876
43 1 5.1902 -1.3227 -0.0127
44 1 3.9334 -1.1882 2.1678
45 1 3.9159 0.3401 1.2550
46 1 1.9182 0.9831 2.5586
47 1 0.4161 0.0353 2.4429
48 1 2.4111 -1.5970 3.5965
49 1 1.7876 -1.1489 8.0434
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185245665.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:02
Heat of formation + Delta-G solvation = 36.108843 kcal
Electronic energy + Delta-G solvation = -29581.966059 eV
Core-core repulsion = 25702.452606 eV
Total energy + Delta-G solvation = -3879.513453 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-43.23354 -41.21673 -39.22757 -37.34955 -36.67916 -35.08097 -34.02102 -33.54990
-32.32645 -31.12028 -28.84349 -28.61961 -27.81632 -25.65007 -24.68454 -23.89539
-23.25818 -22.62675 -22.48696 -21.09042 -20.02698 -19.56814 -18.55757 -17.80600
-17.56428 -16.95729 -16.62918 -16.44375 -16.14134 -16.07269 -15.82425 -15.59903
-15.31624 -15.14073 -14.93747 -14.70789 -14.47719 -14.30651 -14.09444 -13.76929
-13.40654 -13.24520 -13.10041 -12.94754 -12.86497 -12.79566 -12.67348 -12.43804
-12.20408 -12.15813 -11.97689 -11.84173 -11.64370 -11.54997 -11.35895 -11.22746
-10.99785 -10.85869 -9.75259 -9.48433 -9.25936 -8.34396 -8.01253 -5.34548
-0.13917 0.38913 1.14091 1.38689 1.43445 1.50878 1.60029 1.98515
2.27172 2.50466 2.58898 3.30135 3.48202 3.55487 3.64150 3.75702
3.84506 3.90283 3.96728 4.03159 4.08323 4.17640 4.29564 4.30094
4.34971 4.46985 4.51481 4.58383 4.62392 4.68596 4.74702 4.81971
4.86461 4.88624 4.91715 5.00272 5.08358 5.10533 5.19996 5.23837
5.26092 5.31876 5.37146 5.42239 5.49675 5.58704 5.68748 5.77322
5.89938 6.22718 6.27181 6.36780 7.09930 7.10507 7.85842 8.06740
9.20682
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.010407 B = 0.003069 C = 0.002512
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2689.826135 B = 9120.018733 C =11142.043323
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.087 4.087
3 H 0.063 0.937
4 C 0.121 3.879
5 N -0.598 5.598
6 C 0.588 3.412
7 O -0.584 6.584
8 C -0.183 4.183
9 C -0.183 4.183
10 C 0.023 3.977
11 C -0.098 4.098
12 C -0.126 4.126
13 C -0.132 4.132
14 C 0.022 3.978
15 N -0.343 5.343
16 C -0.007 4.007
17 C 0.099 3.901
18 C -0.123 4.123
19 C -0.083 4.083
20 H 0.079 0.921
21 C 0.159 3.841
22 N -0.754 5.754
23 C -0.235 4.235
24 H 0.051 0.949
25 C -0.067 4.067
26 N -0.987 5.987
27 Si 0.956 3.044
28 H -0.275 1.275
29 H -0.297 1.297
30 H -0.246 1.246
31 H 0.055 0.945
32 H 0.068 0.932
33 H 0.065 0.935
34 H 0.084 0.916
35 H 0.083 0.917
36 H 0.167 0.833
37 H 0.161 0.839
38 H 0.162 0.838
39 H 0.179 0.821
40 H 0.187 0.813
41 H 0.186 0.814
42 H 0.087 0.913
43 H 0.110 0.890
44 H 0.072 0.928
45 H 0.055 0.945
46 H 0.013 0.987
47 H 0.031 0.969
48 H 0.367 0.633
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.490 -2.321 -24.160 30.512
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.107 4.107
3 H 0.081 0.919
4 C -0.001 4.001
5 N -0.328 5.328
6 C 0.378 3.622
7 O -0.466 6.466
8 C -0.191 4.191
9 C -0.206 4.206
10 C -0.082 4.082
11 C -0.117 4.117
12 C -0.146 4.146
13 C -0.151 4.151
14 C -0.095 4.095
15 N -0.006 5.006
16 C -0.140 4.140
17 C -0.023 4.023
18 C -0.162 4.162
19 C -0.101 4.101
20 H 0.098 0.902
21 C 0.033 3.967
22 N -0.400 5.400
23 C -0.366 4.366
24 H 0.069 0.931
25 C -0.258 4.258
26 N -0.638 5.638
27 Si 0.783 3.217
28 H -0.201 1.201
29 H -0.224 1.224
30 H -0.170 1.170
31 H 0.074 0.926
32 H 0.087 0.913
33 H 0.084 0.916
34 H 0.102 0.898
35 H 0.101 0.899
36 H 0.184 0.816
37 H 0.179 0.821
38 H 0.179 0.821
39 H 0.196 0.804
40 H 0.204 0.796
41 H 0.203 0.797
42 H 0.106 0.894
43 H 0.128 0.872
44 H 0.090 0.910
45 H 0.073 0.927
46 H 0.031 0.969
47 H 0.049 0.951
48 H 0.201 0.799
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 18.273 -1.767 -24.623 30.713
hybrid contribution 0.042 -0.416 0.727 0.839
sum 18.315 -2.183 -23.896 30.186
Atomic orbital electron populations
1.21809 0.93280 1.02833 1.02306 1.21264 0.96909 0.99216 0.93298
0.91869 1.21616 0.78502 1.01640 0.98318 1.48002 1.06969 1.59781
1.18042 1.17775 0.86105 0.76069 0.82274 1.90728 1.75925 1.49450
1.30480 1.19421 0.92008 0.98034 1.09618 1.21336 0.89993 1.00934
1.08344 1.19195 0.96052 0.86849 1.06152 1.20995 0.89337 1.01302
1.00040 1.21428 0.98922 0.95151 0.99091 1.21250 0.98287 0.96087
0.99471 1.22324 0.82218 1.00679 1.04302 1.41471 1.05933 1.13559
1.39673 1.22003 0.80770 1.01896 1.09336 1.22269 1.00315 0.97378
0.82306 1.21883 0.95271 1.01060 0.97964 1.21297 0.95326 1.00158
0.93366 0.90220 1.20870 0.97197 0.93601 0.84987 1.42687 1.66267
1.28959 1.02125 1.19030 1.27040 1.06347 0.84149 0.93067 1.25562
1.02745 1.02948 0.94535 1.69901 1.53134 1.42648 0.98087 0.85389
0.78828 0.79528 0.77991 1.20107 1.22353 1.17050 0.92611 0.91297
0.91620 0.89753 0.89852 0.81579 0.82132 0.82078 0.80383 0.79609
0.79690 0.89435 0.87197 0.90973 0.92652 0.96921 0.95095 0.79904
0.93356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.25 8.82 71.98 0.64 -2.61 16
2 C -0.09 -2.15 2.40 -10.86 -0.03 -2.18 16
3 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
4 C 0.12 2.85 5.68 86.22 0.49 3.34 16
5 N -0.60 -14.81 2.98 -823.55 -2.45 -17.26 16
6 C 0.59 16.66 7.59 86.68 0.66 17.31 16
7 O -0.58 -20.20 16.52 -4.02 -0.07 -20.27 16
8 C -0.18 -4.50 5.33 -20.15 -0.11 -4.61 16
9 C -0.18 -3.79 8.50 22.94 0.20 -3.59 16
10 C 0.02 0.44 6.70 38.90 0.26 0.70 16
11 C -0.10 -1.33 10.11 22.47 0.23 -1.11 16
12 C -0.13 -1.22 10.07 22.32 0.22 -1.00 16
13 C -0.13 -1.12 9.97 22.06 0.22 -0.90 16
14 C 0.02 0.26 10.89 82.97 0.90 1.17 16
15 N -0.34 -6.38 2.92 -345.07 -1.01 -7.39 16
16 C -0.01 -0.15 11.56 84.14 0.97 0.83 16
17 C 0.10 2.17 5.72 86.36 0.49 2.67 16
18 C -0.12 -3.33 5.25 30.67 0.16 -3.17 16
19 C -0.08 -2.34 1.73 -10.77 -0.02 -2.36 16
20 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
21 C 0.16 6.04 5.41 86.38 0.47 6.50 16
22 N -0.75 -34.95 5.12 -343.45 -1.76 -36.71 16
23 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16
24 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16
25 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16
26 N -0.99 -63.83 13.97 21.65 0.30 -63.53 16
27 Si 0.96 44.75 27.74 68.60 1.90 46.66 16
28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16
30 H -0.25 -10.17 6.52 99.48 0.65 -9.53 16
31 H 0.05 1.41 6.29 -2.38 -0.01 1.40 16
32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16
34 H 0.08 2.14 7.03 -2.38 -0.02 2.13 16
35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
36 H 0.17 2.81 7.13 -2.91 -0.02 2.79 16
37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16
38 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16
39 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16
40 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16
41 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16
42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
43 H 0.11 2.27 4.14 -2.38 -0.01 2.26 16
44 H 0.07 2.08 7.15 -2.39 -0.02 2.07 16
45 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16
46 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16
47 H 0.03 1.20 6.14 -2.39 -0.01 1.18 16
48 H 0.37 15.89 4.71 -92.71 -0.44 15.45 16
49 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16
Total: -1.00 -78.51 386.07 4.49 -74.02
By element:
Atomic # 1 Polarization: 29.16 SS G_CDS: 0.46 Total: 29.62 kcal
Atomic # 6 Polarization: -12.25 SS G_CDS: 7.10 Total: -5.15 kcal
Atomic # 7 Polarization: -119.97 SS G_CDS: -4.92 Total: -124.89 kcal
Atomic # 8 Polarization: -20.20 SS G_CDS: -0.07 Total: -20.27 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.66 kcal
Total: -78.51 4.49 -74.02 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185245665.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.133 kcal
(2) G-P(sol) polarization free energy of solvation -78.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.621 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds