Wall clock time and date at job start Sat Apr 11 2020 06:24:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36938 * 120.00206 * 2 1
4 4 H 1.08003 * 120.00032 * 204.39754 * 3 2 1
5 5 C 1.38803 * 119.99859 * 24.39940 * 3 2 1
6 6 N 1.31621 * 120.00198 * 14.20392 * 5 3 2
7 7 Si 1.86806 * 120.00119 * 194.20947 * 5 3 2
8 8 H 1.48504 * 109.46940 * 0.02562 * 7 5 3
9 9 H 1.48500 * 109.47188 * 119.99745 * 7 5 3
10 10 H 1.48500 * 109.47244 * 239.99975 * 7 5 3
11 11 C 1.46503 * 120.00015 * 179.97438 * 2 1 3
12 12 C 1.53042 * 109.46296 * 300.00068 * 11 2 1
13 13 C 1.53192 * 109.31331 * 181.36922 * 12 11 2
14 14 N 1.46920 * 108.77654 * 305.36465 * 13 12 11
15 15 C 1.34778 * 120.63083 * 233.58517 * 14 13 12
16 16 O 1.21613 * 119.99974 * 4.75204 * 15 14 13
17 17 C 1.47386 * 120.00005 * 184.74849 * 15 14 13
18 18 C 1.39316 * 120.34109 * 39.61300 * 17 15 14
19 19 C 1.38276 * 120.19582 * 179.97438 * 18 17 15
20 20 C 1.38051 * 120.88765 * 0.06771 * 19 18 17
21 21 C 1.38988 * 120.26840 * 359.95294 * 20 19 18
22 22 C 1.40665 * 119.51648 * 0.02562 * 21 20 19
23 23 C 1.45986 * 106.13344 * 179.97438 * 22 21 20
24 24 C 1.34549 * 107.01012 * 359.97438 * 23 22 21
25 25 N 1.36552 * 109.89662 * 0.02562 * 24 23 22
26 26 C 1.46496 * 125.07094 * 180.02562 * 25 24 23
27 27 C 1.46925 * 118.74075 * 53.86031 * 14 13 12
28 28 C 1.53041 * 109.44741 * 60.06248 * 11 2 1
29 29 H 1.09001 * 109.47278 * 271.94142 * 1 2 3
30 30 H 1.08992 * 109.46982 * 31.93900 * 1 2 3
31 31 H 1.08997 * 109.47268 * 151.93961 * 1 2 3
32 32 H 0.97008 * 119.99789 * 180.02562 * 6 5 3
33 33 H 1.09000 * 109.46202 * 180.02562 * 11 2 1
34 34 H 1.09008 * 109.49457 * 61.41731 * 12 11 2
35 35 H 1.08998 * 109.52214 * 301.34028 * 12 11 2
36 36 H 1.08998 * 109.58309 * 185.57791 * 13 12 11
37 37 H 1.08994 * 109.70106 * 65.22771 * 13 12 11
38 38 H 1.08007 * 119.90276 * 359.97438 * 18 17 15
39 39 H 1.08004 * 119.55563 * 180.02562 * 19 18 17
40 40 H 1.07998 * 119.86704 * 180.23561 * 20 19 18
41 41 H 1.08004 * 126.49458 * 180.02562 * 23 22 21
42 42 H 1.07995 * 125.05061 * 180.02562 * 24 23 22
43 43 H 1.08997 * 109.47125 * 269.95613 * 26 25 24
44 44 H 1.08998 * 109.47303 * 29.95950 * 26 25 24
45 45 H 1.09003 * 109.46950 * 149.95712 * 26 25 24
46 46 H 1.09006 * 109.58534 * 65.92615 * 27 14 13
47 47 H 1.08999 * 109.58988 * 186.35049 * 27 14 13
48 48 H 1.09002 * 109.49944 * 298.57150 * 28 11 2
49 49 H 1.09000 * 109.50129 * 58.66848 * 28 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1574 1.2276 -0.3864
5 6 1.5487 2.3343 0.4966
6 7 0.4495 2.2439 1.2150
7 14 2.2997 4.0083 0.1452
8 1 3.5234 3.8386 -0.6789
9 1 1.3195 4.8457 -0.5917
10 1 2.6529 4.6711 1.4262
11 6 2.1975 -1.2687 0.0006
12 6 1.8276 -2.0706 1.2506
13 6 2.6210 -3.3810 1.2651
14 7 2.3843 -4.0911 0.0008
15 6 1.9579 -5.3696 0.0008
16 8 1.6826 -5.9188 1.0503
17 6 1.8252 -6.1021 -1.2713
18 6 2.7768 -5.9448 -2.2766
19 6 2.6496 -6.6339 -3.4686
20 6 1.5840 -7.4844 -3.6853
21 6 0.6182 -7.6620 -2.7018
22 6 0.7338 -6.9683 -1.4836
23 6 -0.4183 -7.3653 -0.6797
24 6 -1.1331 -8.2336 -1.4183
25 7 -0.5286 -8.4223 -2.6281
26 6 -1.0258 -9.3012 -3.6895
27 6 2.6272 -3.3829 -1.2634
28 6 1.8285 -2.0707 -1.2496
29 1 -0.3634 0.0348 1.0271
30 1 -0.3633 0.8720 -0.5436
31 1 -0.3634 -0.9068 -0.4834
32 1 0.0293 3.0465 1.5617
33 1 3.2691 -1.0694 0.0009
34 1 0.7602 -2.2915 1.2384
35 1 2.0686 -1.4894 2.1406
36 1 2.2895 -3.9995 2.0992
37 1 3.6843 -3.1656 1.3698
38 1 3.6164 -5.2826 -2.1244
39 1 3.3936 -6.5045 -4.2408
40 1 1.5030 -8.0173 -4.6212
41 1 -0.6529 -7.0257 0.3183
42 1 -2.0488 -8.7105 -1.1013
43 1 -0.6069 -10.2992 -3.5608
44 1 -2.1133 -9.3542 -3.6377
45 1 -0.7272 -8.9040 -4.6597
46 1 3.6908 -3.1655 -1.3619
47 1 2.3000 -4.0028 -2.0982
48 1 0.7612 -2.2917 -1.2383
49 1 2.0707 -1.4894 -2.1393
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000985704602.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:28
Heat of formation + Delta-G solvation = 67.085889 kcal
Electronic energy + Delta-G solvation = -29988.612039 eV
Core-core repulsion = 26110.441852 eV
Total energy + Delta-G solvation = -3878.170187 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.56398 -39.89316 -37.46004 -36.91892 -34.97180 -33.06308 -32.27020 -31.28396
-30.08912 -29.52643 -29.13973 -26.49250 -25.95033 -25.19206 -23.48736 -22.88408
-21.96585 -21.67291 -20.92619 -19.55499 -18.46947 -17.23792 -17.08177 -16.68213
-16.12187 -15.70663 -15.54499 -15.39614 -14.93610 -14.89760 -14.06112 -13.89527
-13.86996 -13.47966 -13.31122 -13.20643 -13.10757 -12.91534 -12.79788 -12.60587
-12.30654 -12.23122 -11.83340 -11.66169 -11.52465 -11.39091 -11.22637 -10.89458
-10.80044 -10.74107 -10.35201 -10.16271 -10.04780 -9.82660 -9.81639 -9.58317
-9.42857 -8.52509 -8.36196 -8.33701 -7.75614 -6.67993 -5.69307 -3.15379
0.66194 1.39598 2.54467 2.57015 2.92500 3.22279 3.39302 3.46659
3.48564 3.81512 4.39323 4.42943 4.51676 4.61992 4.68434 4.79154
4.88217 4.98664 5.06178 5.23200 5.26683 5.34478 5.40508 5.43216
5.48126 5.55166 5.60982 5.72031 5.76397 5.87714 5.94493 5.98026
6.13823 6.22901 6.24389 6.28216 6.34428 6.46652 6.52224 6.57745
6.63555 6.73837 6.87118 6.98597 7.06302 7.08230 7.09629 7.41072
7.64403 7.76370 7.84098 8.37653 8.45075 9.27550 9.91687 10.42538
11.35850
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.019338 B = 0.002527 C = 0.002517
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1447.542523 B =11079.860414 C =11123.281539
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.163 3.837
2 N -0.595 5.595
3 C -0.254 4.254
4 H 0.067 0.933
5 C 0.002 3.998
6 N -0.905 5.905
7 Si 0.902 3.098
8 H -0.278 1.278
9 H -0.290 1.290
10 H -0.291 1.291
11 C 0.179 3.821
12 C -0.143 4.143
13 C 0.114 3.886
14 N -0.599 5.599
15 C 0.560 3.440
16 O -0.541 6.541
17 C -0.076 4.076
18 C -0.114 4.114
19 C -0.107 4.107
20 C -0.110 4.110
21 C 0.089 3.911
22 C -0.062 4.062
23 C -0.188 4.188
24 C 0.048 3.952
25 N -0.491 5.491
26 C 0.081 3.919
27 C 0.097 3.903
28 C -0.147 4.147
29 H 0.025 0.975
30 H 0.041 0.959
31 H -0.002 1.002
32 H 0.251 0.749
33 H 0.062 0.938
34 H 0.059 0.941
35 H 0.075 0.925
36 H 0.085 0.915
37 H 0.065 0.935
38 H 0.134 0.866
39 H 0.131 0.869
40 H 0.120 0.880
41 H 0.152 0.848
42 H 0.170 0.830
43 H 0.068 0.932
44 H 0.082 0.918
45 H 0.079 0.921
46 H 0.068 0.932
47 H 0.091 0.909
48 H 0.061 0.939
49 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.210 -23.337 -11.445 25.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.316 5.316
3 C -0.383 4.383
4 H 0.085 0.915
5 C -0.197 4.197
6 N -0.549 5.549
7 Si 0.732 3.268
8 H -0.203 1.203
9 H -0.217 1.217
10 H -0.218 1.218
11 C 0.071 3.929
12 C -0.184 4.184
13 C -0.008 4.008
14 N -0.331 5.331
15 C 0.348 3.652
16 O -0.419 6.419
17 C -0.080 4.080
18 C -0.134 4.134
19 C -0.127 4.127
20 C -0.131 4.131
21 C -0.017 4.017
22 C -0.068 4.068
23 C -0.212 4.212
24 C -0.076 4.076
25 N -0.175 5.175
26 C -0.061 4.061
27 C -0.026 4.026
28 C -0.187 4.187
29 H 0.043 0.957
30 H 0.060 0.940
31 H 0.017 0.983
32 H 0.061 0.939
33 H 0.080 0.920
34 H 0.077 0.923
35 H 0.093 0.907
36 H 0.104 0.896
37 H 0.083 0.917
38 H 0.152 0.848
39 H 0.149 0.851
40 H 0.138 0.862
41 H 0.169 0.831
42 H 0.187 0.813
43 H 0.086 0.914
44 H 0.101 0.899
45 H 0.098 0.902
46 H 0.086 0.914
47 H 0.109 0.891
48 H 0.080 0.920
49 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -0.202 -23.666 -11.040 26.115
hybrid contribution 0.166 1.029 -0.169 1.055
sum -0.036 -22.637 -11.208 25.260
Atomic orbital electron populations
1.20702 0.82962 0.95737 0.98752 1.43950 1.01682 1.00228 1.85782
1.19235 0.99175 0.85716 1.34213 0.91507 1.25041 0.98227 0.98540
0.97886 1.70088 1.21224 1.27221 1.36409 0.86229 0.78467 0.84590
0.77508 1.20335 1.21712 1.21806 1.20301 0.95925 0.86023 0.90665
1.22484 1.00023 0.94388 1.01479 1.21704 0.99709 0.93816 0.85600
1.48066 1.65492 1.11417 1.08174 1.18196 0.76880 0.81450 0.88646
1.90751 1.50171 1.68063 1.32917 1.19310 0.95755 0.98420 0.94519
1.21246 0.99218 1.00137 0.92799 1.20699 0.97665 0.96830 0.97471
1.20092 0.94062 1.01385 0.97577 1.18142 0.90115 0.96730 0.96672
1.18926 0.95831 0.98068 0.93971 1.21806 0.95674 1.02856 1.00898
1.21880 0.99465 1.01201 0.85048 1.43738 1.20478 1.38763 1.14519
1.21913 1.00597 0.93662 0.89943 1.22310 1.00064 0.94394 0.85800
1.22545 1.00181 0.94726 1.01209 0.95681 0.94045 0.98323 0.93868
0.91956 0.92259 0.90651 0.89616 0.91694 0.84809 0.85093 0.86209
0.83079 0.81286 0.91391 0.89892 0.90192 0.91376 0.89135 0.91980
0.90887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.07 8.06 59.84 0.48 4.55 16
2 N -0.60 -14.76 2.80 -173.44 -0.49 -15.24 16
3 C -0.25 -6.91 9.55 -15.06 -0.14 -7.05 16
4 H 0.07 1.77 7.84 -52.48 -0.41 1.36 16
5 C 0.00 0.04 5.05 -17.43 -0.09 -0.04 16
6 N -0.90 -26.57 10.89 55.49 0.60 -25.96 16
7 Si 0.90 21.83 29.58 -169.99 -5.03 16.80 16
8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
11 C 0.18 3.58 2.55 -67.89 -0.17 3.41 16
12 C -0.14 -2.71 5.34 -26.61 -0.14 -2.85 16
13 C 0.11 1.85 6.44 -3.71 -0.02 1.82 16
14 N -0.60 -9.33 2.97 -173.79 -0.52 -9.85 16
15 C 0.56 9.32 7.29 -12.54 -0.09 9.23 16
16 O -0.54 -10.54 15.85 5.27 0.08 -10.46 16
17 C -0.08 -1.10 5.20 -104.75 -0.54 -1.65 16
18 C -0.11 -1.30 7.35 -39.17 -0.29 -1.59 16
19 C -0.11 -1.01 9.99 -39.64 -0.40 -1.41 16
20 C -0.11 -1.07 9.94 -39.37 -0.39 -1.46 16
21 C 0.09 1.04 6.80 -83.99 -0.57 0.47 16
22 C -0.06 -0.89 6.11 -104.86 -0.64 -1.53 16
23 C -0.19 -2.51 10.56 -37.78 -0.40 -2.90 16
24 C 0.05 0.49 11.29 -16.75 -0.19 0.30 16
25 N -0.49 -4.71 3.17 -121.82 -0.39 -5.10 16
26 C 0.08 0.41 11.02 59.84 0.66 1.07 16
27 C 0.10 1.33 4.91 -3.48 -0.02 1.32 16
28 C -0.15 -2.48 5.33 -26.38 -0.14 -2.62 16
29 H 0.02 0.68 7.50 -51.93 -0.39 0.29 16
30 H 0.04 1.11 7.25 -51.93 -0.38 0.73 16
31 H 0.00 -0.04 6.46 -51.93 -0.34 -0.37 16
32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
33 H 0.06 1.25 7.87 -51.93 -0.41 0.84 16
34 H 0.06 1.21 7.72 -51.92 -0.40 0.81 16
35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16
36 H 0.09 1.45 6.99 -51.93 -0.36 1.08 16
37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
38 H 0.13 1.33 6.43 -52.48 -0.34 0.99 16
39 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16
41 H 0.15 2.12 7.95 -52.48 -0.42 1.70 16
42 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16
43 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
44 H 0.08 0.28 8.13 -51.93 -0.42 -0.15 16
45 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16
46 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16
47 H 0.09 1.12 4.59 -51.93 -0.24 0.88 16
48 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16
49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
LS Contribution 386.08 15.07 5.82 5.82
Total: -1.00 -34.21 386.08 -10.39 -44.61
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -7.39 Total: 0.32 kcal
Atomic # 6 Polarization: 2.16 SS G_CDS: -3.10 Total: -0.93 kcal
Atomic # 7 Polarization: -55.36 SS G_CDS: -0.78 Total: -56.15 kcal
Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -34.21 -10.39 -44.61 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985704602.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.692 kcal
(2) G-P(sol) polarization free energy of solvation -34.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.480 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds