Wall clock time and date at job start Sat Apr 11 2020 06:24:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36938 * 120.00206 * 2 1
4 4 H 1.08003 * 120.00032 * 204.39754 * 3 2 1
5 5 C 1.38803 * 119.99859 * 24.39940 * 3 2 1
6 6 N 1.31621 * 120.00198 * 14.20392 * 5 3 2
7 7 Si 1.86806 * 120.00119 * 194.20947 * 5 3 2
8 8 H 1.48504 * 109.46940 * 0.02562 * 7 5 3
9 9 H 1.48500 * 109.47188 * 119.99745 * 7 5 3
10 10 H 1.48500 * 109.47244 * 239.99975 * 7 5 3
11 11 C 1.46503 * 120.00015 * 179.97438 * 2 1 3
12 12 C 1.53042 * 109.46296 * 300.00068 * 11 2 1
13 13 C 1.53192 * 109.31331 * 181.36922 * 12 11 2
14 14 N 1.46920 * 108.77654 * 305.36465 * 13 12 11
15 15 C 1.34778 * 120.63083 * 233.58517 * 14 13 12
16 16 O 1.21613 * 119.99974 * 4.75204 * 15 14 13
17 17 C 1.47386 * 120.00005 * 184.74849 * 15 14 13
18 18 C 1.39316 * 120.34109 * 39.61300 * 17 15 14
19 19 C 1.38276 * 120.19582 * 179.97438 * 18 17 15
20 20 C 1.38051 * 120.88765 * 0.06771 * 19 18 17
21 21 C 1.38988 * 120.26840 * 359.95294 * 20 19 18
22 22 C 1.40665 * 119.51648 * 0.02562 * 21 20 19
23 23 C 1.45986 * 106.13344 * 179.97438 * 22 21 20
24 24 C 1.34549 * 107.01012 * 359.97438 * 23 22 21
25 25 N 1.36552 * 109.89662 * 0.02562 * 24 23 22
26 26 C 1.46496 * 125.07094 * 180.02562 * 25 24 23
27 27 C 1.46925 * 118.74075 * 53.86031 * 14 13 12
28 28 C 1.53041 * 109.44741 * 60.06248 * 11 2 1
29 29 H 1.09001 * 109.47278 * 271.94142 * 1 2 3
30 30 H 1.08992 * 109.46982 * 31.93900 * 1 2 3
31 31 H 1.08997 * 109.47268 * 151.93961 * 1 2 3
32 32 H 0.97008 * 119.99789 * 180.02562 * 6 5 3
33 33 H 1.09000 * 109.46202 * 180.02562 * 11 2 1
34 34 H 1.09008 * 109.49457 * 61.41731 * 12 11 2
35 35 H 1.08998 * 109.52214 * 301.34028 * 12 11 2
36 36 H 1.08998 * 109.58309 * 185.57791 * 13 12 11
37 37 H 1.08994 * 109.70106 * 65.22771 * 13 12 11
38 38 H 1.08007 * 119.90276 * 359.97438 * 18 17 15
39 39 H 1.08004 * 119.55563 * 180.02562 * 19 18 17
40 40 H 1.07998 * 119.86704 * 180.23561 * 20 19 18
41 41 H 1.08004 * 126.49458 * 180.02562 * 23 22 21
42 42 H 1.07995 * 125.05061 * 180.02562 * 24 23 22
43 43 H 1.08997 * 109.47125 * 269.95613 * 26 25 24
44 44 H 1.08998 * 109.47303 * 29.95950 * 26 25 24
45 45 H 1.09003 * 109.46950 * 149.95712 * 26 25 24
46 46 H 1.09006 * 109.58534 * 65.92615 * 27 14 13
47 47 H 1.08999 * 109.58988 * 186.35049 * 27 14 13
48 48 H 1.09002 * 109.49944 * 298.57150 * 28 11 2
49 49 H 1.09000 * 109.50129 * 58.66848 * 28 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1574 1.2276 -0.3864
5 6 1.5487 2.3343 0.4966
6 7 0.4495 2.2439 1.2150
7 14 2.2997 4.0083 0.1452
8 1 3.5234 3.8386 -0.6789
9 1 1.3195 4.8457 -0.5917
10 1 2.6529 4.6711 1.4262
11 6 2.1975 -1.2687 0.0006
12 6 1.8276 -2.0706 1.2506
13 6 2.6210 -3.3810 1.2651
14 7 2.3843 -4.0911 0.0008
15 6 1.9579 -5.3696 0.0008
16 8 1.6826 -5.9188 1.0503
17 6 1.8252 -6.1021 -1.2713
18 6 2.7768 -5.9448 -2.2766
19 6 2.6496 -6.6339 -3.4686
20 6 1.5840 -7.4844 -3.6853
21 6 0.6182 -7.6620 -2.7018
22 6 0.7338 -6.9683 -1.4836
23 6 -0.4183 -7.3653 -0.6797
24 6 -1.1331 -8.2336 -1.4183
25 7 -0.5286 -8.4223 -2.6281
26 6 -1.0258 -9.3012 -3.6895
27 6 2.6272 -3.3829 -1.2634
28 6 1.8285 -2.0707 -1.2496
29 1 -0.3634 0.0348 1.0271
30 1 -0.3633 0.8720 -0.5436
31 1 -0.3634 -0.9068 -0.4834
32 1 0.0293 3.0465 1.5617
33 1 3.2691 -1.0694 0.0009
34 1 0.7602 -2.2915 1.2384
35 1 2.0686 -1.4894 2.1406
36 1 2.2895 -3.9995 2.0992
37 1 3.6843 -3.1656 1.3698
38 1 3.6164 -5.2826 -2.1244
39 1 3.3936 -6.5045 -4.2408
40 1 1.5030 -8.0173 -4.6212
41 1 -0.6529 -7.0257 0.3183
42 1 -2.0488 -8.7105 -1.1013
43 1 -0.6069 -10.2992 -3.5608
44 1 -2.1133 -9.3542 -3.6377
45 1 -0.7272 -8.9040 -4.6597
46 1 3.6908 -3.1655 -1.3619
47 1 2.3000 -4.0028 -2.0982
48 1 0.7612 -2.2917 -1.2383
49 1 2.0707 -1.4894 -2.1393
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000985704602.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:28
Heat of formation + Delta-G solvation = 47.736787 kcal
Electronic energy + Delta-G solvation = -29989.451079 eV
Core-core repulsion = 26110.441852 eV
Total energy + Delta-G solvation = -3879.009227 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.38771 -41.11280 -38.93744 -37.82431 -36.67381 -34.00423 -33.76767 -32.56398
-31.53229 -30.86250 -29.97993 -28.03198 -27.08577 -26.65404 -24.77731 -24.22579
-23.34887 -22.53418 -22.02147 -20.87738 -19.72891 -18.75515 -18.25208 -17.92854
-17.18083 -16.96082 -16.60279 -16.39300 -16.14458 -16.02670 -15.70719 -15.19644
-15.12003 -14.86643 -14.76271 -14.34766 -14.16443 -13.97272 -13.88574 -13.61982
-13.53629 -13.23708 -13.11423 -13.04591 -12.83082 -12.70194 -12.54318 -12.41637
-12.32372 -12.27514 -12.04184 -12.01049 -11.80324 -11.58419 -11.23315 -10.86560
-10.62825 -10.51693 -9.67382 -9.15794 -8.74282 -8.57087 -7.80896 -5.29747
-0.21267 0.59899 1.47534 1.48773 1.59355 1.60385 1.80826 1.94093
2.05944 2.52452 2.90761 3.32742 3.44390 3.62966 3.85297 3.89803
3.94201 3.98064 4.11539 4.17524 4.20415 4.26241 4.35823 4.38778
4.49474 4.53666 4.56861 4.66627 4.72628 4.76224 4.80221 4.82275
4.83593 4.91396 4.95641 5.00897 5.08552 5.10143 5.21086 5.35739
5.43952 5.47962 5.50564 5.59781 5.67812 5.68384 5.71204 5.75506
6.18906 6.35896 6.40516 6.42025 7.13326 7.16561 7.89096 8.36107
9.23245
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.019338 B = 0.002527 C = 0.002517
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1447.542523 B =11079.860414 C =11123.281539
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.183 3.817
2 N -0.609 5.609
3 C -0.258 4.258
4 H 0.076 0.924
5 C -0.057 4.057
6 N -0.941 5.941
7 Si 0.969 3.031
8 H -0.261 1.261
9 H -0.294 1.294
10 H -0.295 1.295
11 C 0.175 3.825
12 C -0.131 4.131
13 C 0.124 3.876
14 N -0.600 5.600
15 C 0.557 3.443
16 O -0.583 6.583
17 C -0.115 4.115
18 C -0.107 4.107
19 C -0.108 4.108
20 C -0.097 4.097
21 C 0.072 3.928
22 C -0.095 4.095
23 C -0.245 4.245
24 C 0.074 3.926
25 N -0.487 5.487
26 C 0.072 3.928
27 C 0.105 3.895
28 C -0.135 4.135
29 H -0.006 1.006
30 H 0.016 0.984
31 H 0.021 0.979
32 H 0.246 0.754
33 H 0.069 0.931
34 H 0.035 0.965
35 H 0.054 0.946
36 H 0.073 0.927
37 H 0.089 0.911
38 H 0.150 0.850
39 H 0.169 0.831
40 H 0.156 0.844
41 H 0.125 0.875
42 H 0.206 0.794
43 H 0.082 0.918
44 H 0.103 0.897
45 H 0.094 0.906
46 H 0.099 0.901
47 H 0.111 0.889
48 H 0.043 0.957
49 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.842 -25.253 -15.305 29.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 N -0.331 5.331
3 C -0.388 4.388
4 H 0.094 0.906
5 C -0.252 4.252
6 N -0.588 5.588
7 Si 0.797 3.203
8 H -0.185 1.185
9 H -0.221 1.221
10 H -0.223 1.223
11 C 0.068 3.932
12 C -0.171 4.171
13 C 0.001 3.999
14 N -0.331 5.331
15 C 0.347 3.653
16 O -0.465 6.465
17 C -0.119 4.119
18 C -0.127 4.127
19 C -0.126 4.126
20 C -0.118 4.118
21 C -0.034 4.034
22 C -0.101 4.101
23 C -0.270 4.270
24 C -0.052 4.052
25 N -0.170 5.170
26 C -0.068 4.068
27 C -0.017 4.017
28 C -0.175 4.175
29 H 0.012 0.988
30 H 0.035 0.965
31 H 0.040 0.960
32 H 0.055 0.945
33 H 0.087 0.913
34 H 0.054 0.946
35 H 0.073 0.927
36 H 0.092 0.908
37 H 0.107 0.893
38 H 0.167 0.833
39 H 0.187 0.813
40 H 0.173 0.827
41 H 0.143 0.857
42 H 0.222 0.778
43 H 0.100 0.900
44 H 0.121 0.879
45 H 0.113 0.887
46 H 0.117 0.883
47 H 0.128 0.872
48 H 0.061 0.939
49 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 1.465 -25.616 -14.956 29.699
hybrid contribution -0.389 1.488 0.983 1.825
sum 1.076 -24.128 -13.974 27.903
Atomic orbital electron populations
1.20361 0.83659 0.95567 0.96665 1.44196 1.01605 1.01513 1.85826
1.19627 0.99448 0.86672 1.33052 0.90618 1.25853 0.98973 1.02133
0.98235 1.70264 1.22888 1.27661 1.37989 0.85177 0.78036 0.80022
0.77045 1.18547 1.22103 1.22259 1.20532 0.95726 0.84607 0.92332
1.22278 0.98979 0.95584 1.00281 1.21528 1.00358 0.91939 0.86116
1.48127 1.65279 1.11329 1.08413 1.18716 0.75717 0.81565 0.89273
1.90712 1.51968 1.69071 1.34729 1.19267 0.97895 1.00290 0.94421
1.21504 0.98455 1.00078 0.92635 1.21142 0.98302 0.95848 0.97357
1.20580 0.92746 1.00391 0.98039 1.18443 0.91452 0.97148 0.96347
1.19270 0.96234 0.99018 0.95568 1.21776 0.97877 1.06252 1.01063
1.22323 0.99375 0.98924 0.84587 1.44079 1.19599 1.38316 1.15000
1.22277 1.01992 0.93431 0.89084 1.22429 1.01223 0.92521 0.85499
1.22372 0.99589 0.95996 0.99505 0.98796 0.96499 0.96020 0.94481
0.91290 0.94624 0.92720 0.90812 0.89290 0.83277 0.81314 0.82654
0.85738 0.77767 0.89984 0.87872 0.88716 0.88342 0.87160 0.93852
0.90121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.48 8.06 127.77 1.03 10.51 16
2 N -0.61 -30.70 2.80 -702.65 -1.97 -32.67 16
3 C -0.26 -14.07 9.55 84.03 0.80 -13.26 16
4 H 0.08 3.93 7.84 -2.91 -0.02 3.91 16
5 C -0.06 -3.23 5.05 84.86 0.43 -2.81 16
6 N -0.94 -57.14 10.89 21.65 0.24 -56.91 16
7 Si 0.97 45.28 29.58 68.60 2.03 47.31 16
8 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16
9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
10 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16
11 C 0.17 6.97 2.55 45.02 0.11 7.08 16
12 C -0.13 -5.14 5.34 30.67 0.16 -4.97 16
13 C 0.12 4.06 6.44 86.36 0.56 4.62 16
14 N -0.60 -18.57 2.97 -821.99 -2.44 -21.01 16
15 C 0.56 19.12 7.29 86.65 0.63 19.75 16
16 O -0.58 -24.33 15.85 -4.07 -0.06 -24.39 16
17 C -0.12 -3.31 5.20 -19.95 -0.10 -3.41 16
18 C -0.11 -2.18 7.35 22.54 0.17 -2.01 16
19 C -0.11 -1.58 9.99 22.23 0.22 -1.36 16
20 C -0.10 -1.49 9.94 22.41 0.22 -1.27 16
21 C 0.07 1.55 6.80 38.98 0.27 1.81 16
22 C -0.10 -2.75 6.11 -20.02 -0.12 -2.87 16
23 C -0.24 -6.95 10.56 23.43 0.25 -6.70 16
24 C 0.07 1.43 11.29 83.11 0.94 2.36 16
25 N -0.49 -8.16 3.17 -539.31 -1.71 -9.88 16
26 C 0.07 0.45 11.02 127.77 1.41 1.86 16
27 C 0.11 2.66 4.91 86.51 0.42 3.09 16
28 C -0.13 -4.41 5.33 30.82 0.16 -4.24 16
29 H -0.01 -0.36 7.50 -2.39 -0.02 -0.38 16
30 H 0.02 0.92 7.25 -2.39 -0.02 0.90 16
31 H 0.02 0.99 6.46 -2.39 -0.02 0.98 16
32 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16
33 H 0.07 2.67 7.87 -2.39 -0.02 2.65 16
34 H 0.03 1.53 7.72 -2.38 -0.02 1.52 16
35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16
36 H 0.07 2.62 6.99 -2.39 -0.02 2.61 16
37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16
38 H 0.15 2.44 6.43 -2.91 -0.02 2.42 16
39 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16
40 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16
41 H 0.12 4.01 7.95 -2.91 -0.02 3.98 16
42 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16
43 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16
44 H 0.10 0.26 8.13 -2.39 -0.02 0.24 16
45 H 0.09 0.35 8.10 -2.39 -0.02 0.33 16
46 H 0.10 1.97 8.12 -2.38 -0.02 1.95 16
47 H 0.11 2.44 4.59 -2.39 -0.01 2.43 16
48 H 0.04 1.58 6.72 -2.39 -0.02 1.56 16
49 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16
Total: -1.00 -79.90 386.08 4.59 -75.31
By element:
Atomic # 1 Polarization: 13.11 SS G_CDS: 0.95 Total: 14.06 kcal
Atomic # 6 Polarization: 0.62 SS G_CDS: 7.56 Total: 8.18 kcal
Atomic # 7 Polarization: -114.58 SS G_CDS: -5.88 Total: -120.47 kcal
Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal
Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal
Total: -79.90 4.59 -75.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000985704602.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.047 kcal
(2) G-P(sol) polarization free energy of solvation -79.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds