Wall clock time and date at job start Sat Apr 11 2020 06:23:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81403 * 1
3 3 C 1.81400 * 102.99814 * 2 1
4 4 C 1.52996 * 109.46781 * 180.02562 * 3 2 1
5 5 H 1.08993 * 109.47266 * 304.99616 * 4 3 2
6 6 C 1.53003 * 109.47479 * 65.00002 * 4 3 2
7 7 C 1.50706 * 109.47199 * 184.99630 * 4 3 2
8 8 O 1.21284 * 119.99393 * 334.67580 * 7 4 3
9 9 N 1.34772 * 120.00296 * 154.66772 * 7 4 3
10 10 C 1.47014 * 125.65091 * 175.50571 * 9 7 4
11 11 C 1.54323 * 107.40512 * 178.98641 * 10 9 7
12 12 C 1.55153 * 102.93898 * 337.72643 * 11 10 9
13 13 H 1.08993 * 111.01130 * 277.42833 * 12 11 10
14 14 N 1.46901 * 111.00342 * 153.57634 * 12 11 10
15 15 C 1.46904 * 111.00314 * 185.76131 * 14 12 11
16 16 C 1.53243 * 109.34221 * 172.74808 * 15 14 12
17 17 N 1.47082 * 108.52047 * 53.82597 * 16 15 14
18 18 C 1.36935 * 120.87960 * 128.83577 * 17 16 15
19 19 H 1.08002 * 119.99848 * 206.02067 * 18 17 16
20 20 C 1.38814 * 120.00195 * 26.02565 * 18 17 16
21 21 N 1.31623 * 119.99486 * 13.92860 * 20 18 17
22 22 Si 1.86796 * 120.00342 * 193.93207 * 20 18 17
23 23 H 1.48500 * 109.46871 * 359.97438 * 22 20 18
24 24 H 1.48494 * 109.47307 * 119.99668 * 22 20 18
25 25 H 1.48501 * 109.47128 * 239.99933 * 22 20 18
26 26 C 1.47073 * 118.23911 * 308.81545 * 17 16 15
27 27 C 1.46902 * 111.00008 * 61.45420 * 14 12 11
28 28 C 1.47739 * 125.81834 * 355.40713 * 9 7 4
29 29 H 1.08995 * 109.47240 * 299.99831 * 1 2 3
30 30 H 1.09002 * 109.47215 * 60.00352 * 1 2 3
31 31 H 1.09007 * 109.47111 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.47357 * 59.99607 * 3 2 1
33 33 H 1.09003 * 109.47115 * 299.99668 * 3 2 1
34 34 H 1.08997 * 109.47078 * 172.83135 * 6 4 3
35 35 H 1.09002 * 109.46679 * 292.83217 * 6 4 3
36 36 H 1.09000 * 109.47060 * 52.82936 * 6 4 3
37 37 H 1.09005 * 109.88323 * 59.48783 * 10 9 7
38 38 H 1.09005 * 109.88554 * 298.48170 * 10 9 7
39 39 H 1.08999 * 110.72396 * 96.09068 * 11 10 9
40 40 H 1.09002 * 110.72180 * 219.36745 * 11 10 9
41 41 H 1.09005 * 109.48997 * 292.70276 * 15 14 12
42 42 H 1.08993 * 109.49163 * 52.78351 * 15 14 12
43 43 H 1.08999 * 109.62438 * 294.11582 * 16 15 14
44 44 H 1.08992 * 109.78616 * 173.63113 * 16 15 14
45 45 H 0.97007 * 119.99710 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.62968 * 291.47587 * 26 17 16
47 47 H 1.08995 * 109.79266 * 170.98693 * 26 17 16
48 48 H 1.08990 * 109.49327 * 307.21841 * 27 14 12
49 49 H 1.09001 * 109.48729 * 67.29797 * 27 14 12
50 50 H 1.09005 * 110.29033 * 85.25256 * 28 9 7
51 51 H 1.09000 * 110.37978 * 322.98332 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 6 3.7422 1.9399 -0.0006
5 1 4.1700 1.3952 0.8409
6 6 4.3172 1.3918 -1.3083
7 6 4.0820 3.4029 0.1231
8 8 3.2891 4.2429 -0.2467
9 7 5.2667 3.7779 0.6448
10 6 5.7636 5.1584 0.7378
11 6 7.1444 5.1067 1.4250
12 6 7.0996 3.7598 2.1938
13 1 6.5836 3.8711 3.1474
14 7 8.4517 3.2198 2.3891
15 6 8.4021 1.8821 2.9943
16 6 9.8118 1.2816 3.0145
17 7 10.7152 2.2324 3.6803
18 6 11.5307 1.8283 4.7034
19 1 11.8597 2.5409 5.4453
20 6 11.9347 0.5029 4.7869
21 7 11.7716 -0.3008 3.7574
22 14 12.7096 -0.1401 6.3603
23 1 12.7803 0.9552 7.3606
24 1 11.8855 -1.2513 6.8998
25 1 14.0795 -0.6349 6.0711
26 6 10.7197 3.6285 3.2178
27 6 9.2743 4.1367 3.1895
28 6 6.2829 2.8733 1.2208
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 1.8031 2.2371 0.8899
33 1 1.8031 2.2371 -0.8900
34 1 5.3797 1.6281 -1.3653
35 1 4.1833 0.3104 -1.3389
36 1 3.7981 1.8462 -2.1522
37 1 5.0761 5.7607 1.3318
38 1 5.8622 5.5850 -0.2605
39 1 7.9440 5.1016 0.6843
40 1 7.2627 5.9414 2.1160
41 1 8.0245 1.9581 4.0141
42 1 7.7425 1.2422 2.4085
43 1 10.1506 1.1085 1.9931
44 1 9.8037 0.3394 3.5623
45 1 12.0536 -1.2272 3.8159
46 1 11.1459 3.6809 2.2159
47 1 11.3099 4.2412 3.8992
48 1 9.2470 5.1316 2.7453
49 1 8.8845 4.1812 4.2065
50 1 6.9273 2.4794 0.4348
51 1 5.8025 2.0585 1.7623
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327083318.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:23:06
Heat of formation + Delta-G solvation = -20.445495 kcal
Electronic energy + Delta-G solvation = -28467.602617 eV
Core-core repulsion = 24721.080735 eV
Total energy + Delta-G solvation = -3746.521882 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 341.188 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-41.44426 -39.94422 -38.16992 -35.77136 -35.65538 -33.29975 -32.14843 -31.23860
-29.94513 -29.77731 -28.20862 -27.64752 -25.72814 -24.67970 -24.17519 -22.72295
-21.53865 -20.77163 -20.01782 -18.80896 -18.62890 -17.53527 -17.02976 -16.91613
-16.72858 -16.16279 -15.81994 -15.59891 -15.34238 -15.23917 -15.11762 -14.91659
-14.63509 -14.59960 -14.41307 -14.19427 -13.93855 -13.80500 -13.56156 -13.27886
-13.08794 -13.06744 -13.06297 -12.72506 -12.56550 -12.50265 -12.37539 -12.27082
-12.12505 -11.98188 -11.88008 -11.73504 -11.40676 -11.34866 -11.07479 -10.82153
-10.57023 -9.77471 -9.28934 -8.69517 -8.64942 -7.84084 -5.29456 0.60157
1.45826 1.47265 1.49207 1.58982 1.59869 1.86894 2.52275 2.91474
3.31181 3.39869 3.43521 3.52514 3.72954 3.73713 3.84407 4.05857
4.15763 4.21702 4.30631 4.31524 4.34941 4.37086 4.42743 4.43465
4.54145 4.59386 4.64016 4.66643 4.74421 4.77421 4.80241 4.85871
4.88191 4.90110 4.93152 4.96632 5.10182 5.17629 5.20818 5.22661
5.25729 5.44668 5.63357 5.77903 6.15849 6.26495 6.36492 6.41610
6.98313 7.17141 7.88063 8.40150 9.21791
Molecular weight = 341.19amu
Principal moments of inertia in cm(-1)
A = 0.013369 B = 0.002508 C = 0.002191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2093.839025 B =11160.981091 C =12773.903531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 S -0.284 6.284
3 C -0.058 4.058
4 C -0.087 4.087
5 H 0.108 0.892
6 C -0.135 4.135
7 C 0.539 3.461
8 O -0.577 6.577
9 N -0.613 5.613
10 C 0.109 3.891
11 C -0.112 4.112
12 C 0.070 3.930
13 H 0.053 0.947
14 N -0.524 5.524
15 C 0.050 3.950
16 C 0.183 3.817
17 N -0.616 5.616
18 C -0.258 4.258
19 H 0.067 0.933
20 C -0.053 4.053
21 N -0.936 5.936
22 Si 0.967 3.033
23 H -0.268 1.268
24 H -0.290 1.290
25 H -0.293 1.293
26 C 0.144 3.856
27 C 0.057 3.943
28 C 0.111 3.889
29 H 0.083 0.917
30 H 0.085 0.915
31 H 0.114 0.886
32 H 0.080 0.920
33 H 0.087 0.913
34 H 0.065 0.935
35 H 0.083 0.917
36 H 0.061 0.939
37 H 0.068 0.932
38 H 0.071 0.929
39 H 0.089 0.911
40 H 0.098 0.902
41 H 0.018 0.982
42 H 0.085 0.915
43 H -0.001 1.001
44 H 0.062 0.938
45 H 0.249 0.751
46 H 0.018 0.982
47 H 0.059 0.941
48 H 0.099 0.901
49 H 0.023 0.977
50 H 0.085 0.915
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.868 6.399 -7.861 22.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.284 4.284
2 S -0.058 6.058
3 C -0.207 4.207
4 C -0.109 4.109
5 H 0.126 0.874
6 C -0.193 4.193
7 C 0.327 3.673
8 O -0.458 6.458
9 N -0.346 5.346
10 C -0.014 4.014
11 C -0.150 4.150
12 C -0.039 4.039
13 H 0.071 0.929
14 N -0.249 5.249
15 C -0.079 4.079
16 C 0.057 3.943
17 N -0.340 5.340
18 C -0.388 4.388
19 H 0.085 0.915
20 C -0.248 4.248
21 N -0.583 5.583
22 Si 0.795 3.205
23 H -0.193 1.193
24 H -0.217 1.217
25 H -0.221 1.221
26 C 0.018 3.982
27 C -0.072 4.072
28 C -0.012 4.012
29 H 0.102 0.898
30 H 0.104 0.896
31 H 0.133 0.867
32 H 0.098 0.902
33 H 0.105 0.895
34 H 0.084 0.916
35 H 0.102 0.898
36 H 0.080 0.920
37 H 0.086 0.914
38 H 0.090 0.910
39 H 0.108 0.892
40 H 0.116 0.884
41 H 0.037 0.963
42 H 0.103 0.897
43 H 0.017 0.983
44 H 0.080 0.920
45 H 0.059 0.941
46 H 0.036 0.964
47 H 0.077 0.923
48 H 0.117 0.883
49 H 0.041 0.959
50 H 0.103 0.897
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -19.420 5.759 -8.540 21.983
hybrid contribution -0.435 0.447 1.557 1.677
sum -19.855 6.206 -6.983 21.943
Atomic orbital electron populations
1.23470 0.91537 1.07600 1.05782 1.86949 1.10385 1.10376 1.98137
1.23123 0.97438 0.94431 1.05716 1.21021 0.95173 0.91807 1.02916
0.87448 1.21725 1.01087 1.02463 0.94025 1.20448 0.79541 0.91273
0.76054 1.90675 1.48986 1.54761 1.51335 1.48554 1.17262 1.09373
1.59428 1.21996 0.95152 0.82935 1.01270 1.22684 0.95863 0.96621
0.99839 1.22733 0.88948 0.95184 0.97074 0.92916 1.61944 1.10873
1.02514 1.49615 1.22618 0.98761 0.90328 0.96203 1.20696 0.86378
0.92943 0.94295 1.44431 1.44592 1.05806 1.39216 1.19567 1.23103
0.94316 1.01810 0.91523 1.25758 1.00678 0.98309 1.00088 1.70154
1.52472 1.05748 1.29882 0.85210 0.77333 0.78068 0.79857 1.19266
1.21692 1.22054 1.21129 0.94732 0.85496 0.96850 1.22461 0.93806
0.96175 0.94765 1.22433 0.89400 0.92552 0.96777 0.89813 0.89583
0.86726 0.90152 0.89462 0.91556 0.89791 0.91961 0.91373 0.91029
0.89225 0.88401 0.96341 0.89706 0.98282 0.91969 0.94128 0.96400
0.92294 0.88295 0.95919 0.89710 0.89696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.30 10.76 113.37 1.22 -0.08 16
2 S -0.28 -4.94 21.33 -56.49 -1.20 -6.14 16
3 C -0.06 -1.07 4.83 71.98 0.35 -0.72 16
4 C -0.09 -1.65 2.28 -11.54 -0.03 -1.68 16
5 H 0.11 1.92 6.69 -2.39 -0.02 1.90 16
6 C -0.14 -2.35 8.89 71.98 0.64 -1.71 16
7 C 0.54 12.70 6.95 87.66 0.61 13.31 16
8 O -0.58 -17.24 16.53 -3.04 -0.05 -17.29 16
9 N -0.61 -13.16 3.34 -810.99 -2.71 -15.87 16
10 C 0.11 2.11 6.86 86.73 0.60 2.71 16
11 C -0.11 -2.02 5.31 31.78 0.17 -1.86 16
12 C 0.07 1.57 2.72 46.31 0.13 1.70 16
13 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
14 N -0.52 -15.56 4.53 -861.90 -3.90 -19.46 16
15 C 0.05 1.75 5.48 86.38 0.47 2.23 16
16 C 0.18 8.58 5.42 86.35 0.47 9.05 16
17 N -0.62 -30.36 3.04 -698.14 -2.13 -32.48 16
18 C -0.26 -13.95 9.66 84.03 0.81 -13.14 16
19 H 0.07 3.52 7.86 -2.91 -0.02 3.50 16
20 C -0.05 -2.95 5.02 84.86 0.43 -2.52 16
21 N -0.94 -54.48 10.91 21.65 0.24 -54.24 16
22 Si 0.97 44.36 29.58 68.60 2.03 46.39 16
23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
26 C 0.14 5.69 6.69 86.35 0.58 6.26 16
27 C 0.06 1.74 5.48 86.38 0.47 2.22 16
28 C 0.11 2.30 5.08 86.79 0.44 2.74 16
29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16
34 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16
35 H 0.08 1.39 7.40 -2.39 -0.02 1.37 16
36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16
38 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16
39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
40 H 0.10 1.47 7.94 -2.39 -0.02 1.45 16
41 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16
42 H 0.08 2.55 6.81 -2.39 -0.02 2.54 16
43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16
44 H 0.06 3.33 5.95 -2.39 -0.01 3.32 16
45 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16
46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
47 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16
48 H 0.10 2.37 6.85 -2.39 -0.02 2.35 16
49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
50 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16
51 H 0.08 1.63 6.62 -2.39 -0.02 1.61 16
Total: -1.00 -66.55 404.53 0.51 -66.04
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: 0.88 Total: 14.55 kcal
Atomic # 6 Polarization: 11.16 SS G_CDS: 7.35 Total: 18.51 kcal
Atomic # 7 Polarization: -113.56 SS G_CDS: -8.50 Total: -122.06 kcal
Atomic # 8 Polarization: -17.24 SS G_CDS: -0.05 Total: -17.29 kcal
Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal
Atomic # 16 Polarization: -4.94 SS G_CDS: -1.20 Total: -6.14 kcal
Total: -66.55 0.51 -66.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327083318.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.598 kcal
(2) G-P(sol) polarization free energy of solvation -66.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.955 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds