Wall clock time and date at job start Sat Apr 11 2020 06:25:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08994 * 109.46828 * 2 1
4 4 C 1.47193 * 109.47054 * 239.99792 * 2 1 3
5 5 N 2.60803 * 109.47123 * 239.99943 * 2 1 3
6 6 C 1.50698 * 109.46736 * 120.00081 * 2 1 3
7 7 O 1.21274 * 120.00615 * 9.66880 * 6 2 1
8 8 N 1.34781 * 119.99486 * 189.67228 * 6 2 1
9 9 C 1.46500 * 120.00091 * 4.32088 * 8 6 2
10 10 C 1.50700 * 109.46991 * 95.16512 * 9 8 6
11 11 C 1.38239 * 119.99503 * 263.56740 * 10 9 8
12 12 C 1.38235 * 119.99623 * 179.76911 * 11 10 9
13 13 C 1.38236 * 120.00405 * 0.48469 * 12 11 10
14 14 C 1.38235 * 119.99304 * 359.79371 * 13 12 11
15 15 C 1.38228 * 120.00538 * 83.84885 * 10 9 8
16 16 C 1.46507 * 119.99964 * 184.32036 * 8 6 2
17 17 H 1.08996 * 109.49359 * 178.53460 * 16 8 6
18 18 C 1.53035 * 109.49562 * 298.60336 * 16 8 6
19 19 C 1.53044 * 109.53945 * 181.31597 * 18 16 8
20 20 C 1.53189 * 109.30838 * 298.63577 * 19 18 16
21 21 N 1.46930 * 108.78148 * 54.63156 * 20 19 18
22 22 C 1.36935 * 120.63189 * 126.43132 * 21 20 19
23 23 H 1.07992 * 120.00122 * 209.46934 * 22 21 20
24 24 C 1.38814 * 119.99848 * 29.47099 * 22 21 20
25 25 N 1.31620 * 120.00083 * 14.33592 * 24 22 21
26 26 Si 1.86798 * 119.99866 * 194.33318 * 24 22 21
27 27 H 1.48504 * 109.47181 * 0.02562 * 26 24 22
28 28 H 1.48499 * 109.46926 * 119.99895 * 26 24 22
29 29 H 1.48499 * 109.47439 * 240.00250 * 26 24 22
30 30 C 1.46929 * 118.76101 * 306.41233 * 21 20 19
31 31 H 1.09000 * 109.47210 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47084 * 60.00062 * 1 2 3
33 33 H 1.09005 * 109.47251 * 300.00092 * 1 2 3
34 34 H 1.08999 * 109.47164 * 215.16221 * 9 8 6
35 35 H 1.08996 * 109.47289 * 335.16346 * 9 8 6
36 36 H 1.08004 * 120.00410 * 0.02562 * 11 10 9
37 37 H 1.07997 * 120.00150 * 180.25684 * 12 11 10
38 38 H 1.07997 * 120.00476 * 179.76752 * 13 12 11
39 39 H 1.08007 * 119.99698 * 179.97438 * 14 13 12
40 40 H 1.07998 * 119.99643 * 359.97438 * 15 10 9
41 41 H 1.09005 * 109.46201 * 301.33012 * 18 16 8
42 42 H 1.09001 * 109.46908 * 61.29376 * 18 16 8
43 43 H 1.09003 * 109.49387 * 58.57893 * 19 18 16
44 44 H 1.08993 * 109.49950 * 178.67840 * 19 18 16
45 45 H 1.09005 * 109.58772 * 174.41891 * 20 19 18
46 46 H 1.09007 * 109.58674 * 294.84276 * 20 19 18
47 47 H 0.97003 * 119.99867 * 179.97438 * 25 24 22
48 48 H 1.08999 * 109.56503 * 293.78418 * 30 21 20
49 49 H 1.08997 * 109.61612 * 173.35546 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0207 -0.6939 -1.2018
5 7 2.3994 -1.2295 -2.1294
6 6 2.0323 -0.7104 1.2305
7 8 1.2583 -1.3216 1.9363
8 7 3.3417 -0.6665 1.5466
9 6 4.2610 0.1488 0.7487
10 6 4.4310 1.4971 1.4000
11 6 3.6745 2.5719 0.9715
12 6 3.8271 3.8076 1.5722
13 6 4.7432 3.9709 2.5944
14 6 5.5037 2.8974 3.0189
15 6 5.3475 1.6605 2.4218
16 6 3.8459 -1.4340 2.6881
17 1 4.9238 -1.2957 2.7719
18 6 3.1672 -0.9474 3.9705
19 6 3.7171 -1.7260 5.1679
20 6 3.4045 -3.2151 4.9905
21 7 3.9287 -3.6570 3.6910
22 6 4.7680 -4.7358 3.6075
23 1 5.5038 -4.7878 2.8188
24 6 4.6728 -5.7627 4.5367
25 7 3.6159 -5.8489 5.3164
26 14 6.0448 -7.0223 4.6805
27 1 7.1131 -6.7048 3.6991
28 1 6.6083 -6.9857 6.0539
29 1 5.5040 -8.3772 4.4032
30 6 3.5354 -2.9200 2.4823
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 5.2284 -0.3495 0.6870
35 1 3.8545 0.2784 -0.2543
36 1 2.9614 2.4452 0.1704
37 1 3.2332 4.6463 1.2403
38 1 4.8650 4.9372 3.0611
39 1 6.2198 3.0251 3.8173
40 1 5.9414 0.8218 2.7537
41 1 3.3667 0.1156 4.1062
42 1 2.0917 -1.1081 3.8959
43 1 4.7963 -1.5856 5.2285
44 1 3.2505 -1.3628 6.0834
45 1 3.8788 -3.7858 5.7890
46 1 2.3256 -3.3682 5.0204
47 1 3.5493 -6.5667 5.9655
48 1 2.4673 -3.0493 2.3074
49 1 4.0960 -3.2952 1.6262
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713761895.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:35
Heat of formation + Delta-G solvation = 46.768012 kcal
Electronic energy + Delta-G solvation = -30903.533665 eV
Core-core repulsion = 27024.482428 eV
Total energy + Delta-G solvation = -3879.051237 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.75206 -39.17666 -37.50052 -36.63768 -35.45332 -33.43566 -32.61950 -31.53141
-31.09580 -30.38044 -28.96149 -26.33650 -25.28005 -25.15925 -22.85410 -22.38806
-22.00898 -21.68862 -19.97418 -19.33458 -17.79933 -17.43216 -16.69921 -16.54163
-15.96884 -15.59524 -15.09636 -14.91646 -14.62945 -14.28970 -14.02210 -13.86031
-13.64037 -13.49921 -13.38179 -13.06533 -13.03444 -12.97277 -12.71034 -12.53443
-12.35778 -12.30920 -12.14806 -11.99360 -11.67916 -11.66762 -11.41552 -11.20363
-11.03808 -10.87648 -10.65290 -10.31966 -10.12306 -9.98066 -9.70957 -9.53791
-9.31727 -9.10664 -8.98964 -8.62221 -8.35304 -6.58443 -5.74528 -3.19742
1.08453 1.21545 2.21222 2.47948 2.66273 3.04664 3.38487 3.46102
3.48113 3.64849 3.70401 4.30296 4.46830 4.52496 4.55657 4.60107
4.71580 4.83259 4.94286 4.97435 5.26564 5.36477 5.37898 5.42316
5.44273 5.52671 5.55210 5.60692 5.72816 5.77158 5.83143 5.86832
5.97202 6.02524 6.16575 6.24317 6.32392 6.37424 6.45111 6.53907
6.64379 6.72723 6.79200 6.86823 6.96138 7.15198 7.24195 7.45294
7.49271 7.75469 7.82751 8.17662 8.50210 9.25681 9.87788 10.45714
11.33602
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.011174 B = 0.003832 C = 0.003274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2505.211265 B = 7305.179633 C = 8550.021416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.020 4.020
3 H 0.131 0.869
4 C 0.208 3.792
5 N -0.408 5.408
6 C 0.522 3.478
7 O -0.499 6.499
8 N -0.596 5.596
9 C 0.143 3.857
10 C -0.103 4.103
11 C -0.113 4.113
12 C -0.120 4.120
13 C -0.118 4.118
14 C -0.117 4.117
15 C -0.096 4.096
16 C 0.136 3.864
17 H 0.081 0.919
18 C -0.120 4.120
19 C -0.138 4.138
20 C 0.171 3.829
21 N -0.587 5.587
22 C -0.253 4.253
23 H 0.064 0.936
24 C 0.004 3.996
25 N -0.901 5.901
26 Si 0.902 3.098
27 H -0.278 1.278
28 H -0.289 1.289
29 H -0.290 1.290
30 C 0.135 3.865
31 H 0.076 0.924
32 H 0.069 0.931
33 H 0.083 0.917
34 H 0.093 0.907
35 H 0.081 0.919
36 H 0.119 0.881
37 H 0.122 0.878
38 H 0.120 0.880
39 H 0.122 0.878
40 H 0.124 0.876
41 H 0.042 0.958
42 H 0.078 0.922
43 H 0.051 0.949
44 H 0.050 0.950
45 H 0.086 0.914
46 H 0.020 0.980
47 H 0.253 0.747
48 H 0.042 0.958
49 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.980 22.214 -7.602 23.499
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.044 4.044
3 H 0.148 0.852
4 C -0.110 4.110
5 N -0.084 5.084
6 C 0.306 3.694
7 O -0.372 6.372
8 N -0.328 5.328
9 C 0.019 3.981
10 C -0.104 4.104
11 C -0.132 4.132
12 C -0.138 4.138
13 C -0.137 4.137
14 C -0.135 4.135
15 C -0.114 4.114
16 C 0.033 3.967
17 H 0.099 0.901
18 C -0.158 4.158
19 C -0.178 4.178
20 C 0.046 3.954
21 N -0.310 5.310
22 C -0.383 4.383
23 H 0.082 0.918
24 C -0.194 4.194
25 N -0.545 5.545
26 Si 0.732 3.268
27 H -0.203 1.203
28 H -0.216 1.216
29 H -0.217 1.217
30 C 0.008 3.992
31 H 0.095 0.905
32 H 0.088 0.912
33 H 0.102 0.898
34 H 0.111 0.889
35 H 0.099 0.901
36 H 0.137 0.863
37 H 0.140 0.860
38 H 0.138 0.862
39 H 0.140 0.860
40 H 0.142 0.858
41 H 0.061 0.939
42 H 0.097 0.903
43 H 0.069 0.931
44 H 0.069 0.931
45 H 0.105 0.895
46 H 0.038 0.962
47 H 0.063 0.937
48 H 0.060 0.940
49 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -0.854 20.877 -8.491 22.554
hybrid contribution 0.706 -0.296 0.477 0.903
sum -0.148 20.581 -8.014 22.086
Atomic orbital electron populations
1.21652 0.89183 1.04796 1.03424 1.19206 0.99610 0.99625 0.85988
0.85209 1.28422 0.93941 0.94402 0.94251 1.81268 1.08034 1.07805
1.11299 1.19845 0.82468 0.81297 0.85781 1.90763 1.54511 1.40971
1.50938 1.48204 1.06783 1.46263 1.31583 1.20580 0.95749 0.88238
0.93526 1.20219 0.97184 0.95204 0.97793 1.21036 0.99152 0.92875
1.00108 1.21101 0.98712 0.97212 0.96795 1.21173 0.96377 0.98873
0.97247 1.21183 0.99602 0.92956 0.99791 1.21106 0.97651 0.97489
0.95158 1.21929 0.97657 0.93373 0.83756 0.90084 1.21793 1.02103
0.97703 0.94243 1.22176 0.99841 0.99828 0.95910 1.20804 0.96670
0.88873 0.89095 1.43954 1.55075 1.31807 1.00140 1.19199 1.09393
0.96179 1.13488 0.91821 1.25083 0.96905 0.96971 1.00487 1.70036
1.26580 1.33029 1.24854 0.86230 0.81728 0.81327 0.77524 1.20304
1.21555 1.21702 1.21227 0.98965 0.88213 0.90785 0.90467 0.91158
0.89800 0.88881 0.90101 0.86314 0.86047 0.86202 0.85976 0.85770
0.93885 0.90347 0.93052 0.93088 0.89538 0.96214 0.93689 0.93991
0.93472
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.13 8.50 37.16 0.32 -0.81 16
2 C -0.02 -0.19 2.30 -94.56 -0.22 -0.41 16
3 H 0.13 0.87 4.96 -51.93 -0.26 0.61 16
4 C 0.21 2.46 12.73 -20.76 -0.26 2.20 16
5 N -0.41 -5.79 18.54 42.16 0.78 -5.01 16
6 C 0.52 7.33 6.30 -10.98 -0.07 7.26 16
7 O -0.50 -8.91 12.20 5.56 0.07 -8.84 16
8 N -0.60 -8.20 2.41 -167.33 -0.40 -8.60 16
9 C 0.14 1.50 5.18 -5.19 -0.03 1.48 16
10 C -0.10 -1.01 5.46 -104.63 -0.57 -1.58 16
11 C -0.11 -0.94 9.26 -39.58 -0.37 -1.31 16
12 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16
13 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16
14 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16
15 C -0.10 -0.98 9.73 -39.59 -0.39 -1.36 16
16 C 0.14 2.33 2.70 -67.81 -0.18 2.15 16
17 H 0.08 1.36 7.66 -51.93 -0.40 0.96 16
18 C -0.12 -2.11 5.09 -26.69 -0.14 -2.25 16
19 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16
20 C 0.17 4.19 5.28 -3.71 -0.02 4.17 16
21 N -0.59 -15.00 2.99 -172.31 -0.52 -15.51 16
22 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16
23 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16
24 C 0.00 0.12 4.97 -17.43 -0.09 0.03 16
25 N -0.90 -26.56 11.13 55.49 0.62 -25.94 16
26 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16
27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
30 C 0.14 2.98 5.77 -3.71 -0.02 2.96 16
31 H 0.08 0.80 7.99 -51.93 -0.42 0.39 16
32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.09 0.96 8.00 -51.93 -0.42 0.55 16
35 H 0.08 0.74 4.96 -51.93 -0.26 0.49 16
36 H 0.12 0.72 6.02 -52.48 -0.32 0.41 16
37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16
39 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16
40 H 0.12 1.28 7.87 -52.49 -0.41 0.87 16
41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.08 1.54 6.17 -51.93 -0.32 1.22 16
43 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.09 2.34 6.08 -51.93 -0.32 2.03 16
46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
48 H 0.04 1.02 6.09 -51.93 -0.32 0.70 16
49 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16
LS Contribution 390.19 15.07 5.88 5.88
Total: -1.00 -33.21 390.19 -9.32 -42.53
By element:
Atomic # 1 Polarization: 7.47 SS G_CDS: -7.19 Total: 0.28 kcal
Atomic # 6 Polarization: 1.87 SS G_CDS: -3.53 Total: -1.66 kcal
Atomic # 7 Polarization: -55.54 SS G_CDS: 0.48 Total: -55.06 kcal
Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -33.21 -9.32 -42.53 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713761895.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.300 kcal
(2) G-P(sol) polarization free energy of solvation -33.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds