Wall clock time and date at job start Sat Apr 11 2020 06:25:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08994 * 109.46828 * 2 1
4 4 C 1.47193 * 109.47054 * 239.99792 * 2 1 3
5 5 N 2.60803 * 109.47123 * 239.99943 * 2 1 3
6 6 C 1.50698 * 109.46736 * 120.00081 * 2 1 3
7 7 O 1.21274 * 120.00615 * 9.66880 * 6 2 1
8 8 N 1.34781 * 119.99486 * 189.67228 * 6 2 1
9 9 C 1.46500 * 120.00091 * 4.32088 * 8 6 2
10 10 C 1.50700 * 109.46991 * 95.16512 * 9 8 6
11 11 C 1.38239 * 119.99503 * 263.56740 * 10 9 8
12 12 C 1.38235 * 119.99623 * 179.76911 * 11 10 9
13 13 C 1.38236 * 120.00405 * 0.48469 * 12 11 10
14 14 C 1.38235 * 119.99304 * 359.79371 * 13 12 11
15 15 C 1.38228 * 120.00538 * 83.84885 * 10 9 8
16 16 C 1.46507 * 119.99964 * 184.32036 * 8 6 2
17 17 H 1.08996 * 109.49359 * 178.53460 * 16 8 6
18 18 C 1.53035 * 109.49562 * 298.60336 * 16 8 6
19 19 C 1.53044 * 109.53945 * 181.31597 * 18 16 8
20 20 C 1.53189 * 109.30838 * 298.63577 * 19 18 16
21 21 N 1.46930 * 108.78148 * 54.63156 * 20 19 18
22 22 C 1.36935 * 120.63189 * 126.43132 * 21 20 19
23 23 H 1.07992 * 120.00122 * 209.46934 * 22 21 20
24 24 C 1.38814 * 119.99848 * 29.47099 * 22 21 20
25 25 N 1.31620 * 120.00083 * 14.33592 * 24 22 21
26 26 Si 1.86798 * 119.99866 * 194.33318 * 24 22 21
27 27 H 1.48504 * 109.47181 * 0.02562 * 26 24 22
28 28 H 1.48499 * 109.46926 * 119.99895 * 26 24 22
29 29 H 1.48499 * 109.47439 * 240.00250 * 26 24 22
30 30 C 1.46929 * 118.76101 * 306.41233 * 21 20 19
31 31 H 1.09000 * 109.47210 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47084 * 60.00062 * 1 2 3
33 33 H 1.09005 * 109.47251 * 300.00092 * 1 2 3
34 34 H 1.08999 * 109.47164 * 215.16221 * 9 8 6
35 35 H 1.08996 * 109.47289 * 335.16346 * 9 8 6
36 36 H 1.08004 * 120.00410 * 0.02562 * 11 10 9
37 37 H 1.07997 * 120.00150 * 180.25684 * 12 11 10
38 38 H 1.07997 * 120.00476 * 179.76752 * 13 12 11
39 39 H 1.08007 * 119.99698 * 179.97438 * 14 13 12
40 40 H 1.07998 * 119.99643 * 359.97438 * 15 10 9
41 41 H 1.09005 * 109.46201 * 301.33012 * 18 16 8
42 42 H 1.09001 * 109.46908 * 61.29376 * 18 16 8
43 43 H 1.09003 * 109.49387 * 58.57893 * 19 18 16
44 44 H 1.08993 * 109.49950 * 178.67840 * 19 18 16
45 45 H 1.09005 * 109.58772 * 174.41891 * 20 19 18
46 46 H 1.09007 * 109.58674 * 294.84276 * 20 19 18
47 47 H 0.97003 * 119.99867 * 179.97438 * 25 24 22
48 48 H 1.08999 * 109.56503 * 293.78418 * 30 21 20
49 49 H 1.08997 * 109.61612 * 173.35546 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0207 -0.6939 -1.2018
5 7 2.3994 -1.2295 -2.1294
6 6 2.0323 -0.7104 1.2305
7 8 1.2583 -1.3216 1.9363
8 7 3.3417 -0.6665 1.5466
9 6 4.2610 0.1488 0.7487
10 6 4.4310 1.4971 1.4000
11 6 3.6745 2.5719 0.9715
12 6 3.8271 3.8076 1.5722
13 6 4.7432 3.9709 2.5944
14 6 5.5037 2.8974 3.0189
15 6 5.3475 1.6605 2.4218
16 6 3.8459 -1.4340 2.6881
17 1 4.9238 -1.2957 2.7719
18 6 3.1672 -0.9474 3.9705
19 6 3.7171 -1.7260 5.1679
20 6 3.4045 -3.2151 4.9905
21 7 3.9287 -3.6570 3.6910
22 6 4.7680 -4.7358 3.6075
23 1 5.5038 -4.7878 2.8188
24 6 4.6728 -5.7627 4.5367
25 7 3.6159 -5.8489 5.3164
26 14 6.0448 -7.0223 4.6805
27 1 7.1131 -6.7048 3.6991
28 1 6.6083 -6.9857 6.0539
29 1 5.5040 -8.3772 4.4032
30 6 3.5354 -2.9200 2.4823
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 5.2284 -0.3495 0.6870
35 1 3.8545 0.2784 -0.2543
36 1 2.9614 2.4452 0.1704
37 1 3.2332 4.6463 1.2403
38 1 4.8650 4.9372 3.0611
39 1 6.2198 3.0251 3.8173
40 1 5.9414 0.8218 2.7537
41 1 3.3667 0.1156 4.1062
42 1 2.0917 -1.1081 3.8959
43 1 4.7963 -1.5856 5.2285
44 1 3.2505 -1.3628 6.0834
45 1 3.8788 -3.7858 5.7890
46 1 2.3256 -3.3682 5.0204
47 1 3.5493 -6.5667 5.9655
48 1 2.4673 -3.0493 2.3074
49 1 4.0960 -3.2952 1.6262
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713761895.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:34
Heat of formation + Delta-G solvation = 28.780313 kcal
Electronic energy + Delta-G solvation = -30904.313670 eV
Core-core repulsion = 27024.482428 eV
Total energy + Delta-G solvation = -3879.831242 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 341.184 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.86016 -39.89772 -39.00567 -37.80302 -36.69530 -34.86551 -33.93100 -32.51224
-32.31690 -31.70517 -30.42648 -27.24648 -27.16976 -26.20410 -23.93067 -23.80958
-23.34939 -22.54855 -21.29198 -20.75794 -18.85510 -18.66521 -18.22518 -17.48874
-17.13733 -16.81776 -16.31438 -15.92383 -15.82044 -15.66327 -15.32232 -15.12389
-15.00586 -14.80616 -14.37300 -14.27086 -14.18240 -14.03676 -13.96926 -13.88339
-13.56557 -13.27400 -13.15921 -13.03975 -12.96530 -12.78598 -12.77326 -12.47324
-12.41109 -12.19727 -12.13400 -11.94738 -11.78133 -11.71690 -11.43178 -11.28219
-10.68307 -10.54503 -9.82570 -9.72843 -9.62292 -8.65370 -7.88696 -5.38297
0.41864 0.59279 1.15891 1.44618 1.45293 1.53336 1.56567 1.63065
2.00325 2.49794 2.77920 2.97357 3.25727 3.35257 3.70554 3.77104
3.80144 3.83885 3.96013 4.02923 4.13323 4.23649 4.27638 4.31543
4.40607 4.46605 4.53298 4.62449 4.73214 4.75998 4.80464 4.86569
4.87584 4.92750 5.04544 5.12141 5.14784 5.18590 5.23610 5.31243
5.32851 5.46978 5.58432 5.63113 5.64176 5.71635 5.72566 5.78662
6.18250 6.28185 6.34753 6.37687 7.05435 7.13280 7.81403 8.35256
9.17516
Molecular weight = 341.18amu
Principal moments of inertia in cm(-1)
A = 0.011174 B = 0.003832 C = 0.003274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2505.211265 B = 7305.179633 C = 8550.021416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.006 4.006
3 H 0.172 0.828
4 C 0.229 3.771
5 N -0.449 5.449
6 C 0.515 3.485
7 O -0.542 6.542
8 N -0.595 5.595
9 C 0.143 3.857
10 C -0.114 4.114
11 C -0.115 4.115
12 C -0.122 4.122
13 C -0.122 4.122
14 C -0.130 4.130
15 C -0.114 4.114
16 C 0.154 3.846
17 H 0.090 0.910
18 C -0.106 4.106
19 C -0.126 4.126
20 C 0.179 3.821
21 N -0.604 5.604
22 C -0.266 4.266
23 H 0.065 0.935
24 C -0.048 4.048
25 N -0.935 5.935
26 Si 0.970 3.030
27 H -0.265 1.265
28 H -0.285 1.285
29 H -0.294 1.294
30 C 0.138 3.862
31 H 0.051 0.949
32 H 0.103 0.897
33 H 0.092 0.908
34 H 0.092 0.908
35 H 0.098 0.902
36 H 0.144 0.856
37 H 0.148 0.852
38 H 0.139 0.861
39 H 0.130 0.870
40 H 0.115 0.885
41 H 0.071 0.929
42 H 0.057 0.943
43 H 0.059 0.941
44 H 0.069 0.931
45 H 0.056 0.944
46 H -0.015 1.015
47 H 0.250 0.750
48 H 0.015 0.985
49 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.337 25.485 -8.706 26.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.030 4.030
3 H 0.189 0.811
4 C -0.089 4.089
5 N -0.125 5.125
6 C 0.301 3.699
7 O -0.418 6.418
8 N -0.326 5.326
9 C 0.021 3.979
10 C -0.115 4.115
11 C -0.133 4.133
12 C -0.140 4.140
13 C -0.140 4.140
14 C -0.148 4.148
15 C -0.132 4.132
16 C 0.049 3.951
17 H 0.108 0.892
18 C -0.145 4.145
19 C -0.165 4.165
20 C 0.054 3.946
21 N -0.327 5.327
22 C -0.396 4.396
23 H 0.083 0.917
24 C -0.244 4.244
25 N -0.581 5.581
26 Si 0.798 3.202
27 H -0.190 1.190
28 H -0.212 1.212
29 H -0.221 1.221
30 C 0.012 3.988
31 H 0.070 0.930
32 H 0.121 0.879
33 H 0.111 0.889
34 H 0.111 0.889
35 H 0.116 0.884
36 H 0.162 0.838
37 H 0.165 0.835
38 H 0.157 0.843
39 H 0.148 0.852
40 H 0.133 0.867
41 H 0.089 0.911
42 H 0.076 0.924
43 H 0.078 0.922
44 H 0.088 0.912
45 H 0.075 0.925
46 H 0.003 0.997
47 H 0.060 0.940
48 H 0.033 0.967
49 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -0.190 24.197 -9.639 26.047
hybrid contribution 0.461 -1.285 0.794 1.580
sum 0.271 22.911 -8.845 24.561
Atomic orbital electron populations
1.21718 0.87924 1.03856 1.05498 1.19319 1.00425 1.00586 0.82662
0.81113 1.28679 0.92792 0.93441 0.93995 1.81300 1.09459 1.08950
1.12831 1.20562 0.82038 0.80685 0.86585 1.90761 1.55644 1.42732
1.52700 1.48187 1.07435 1.46103 1.30882 1.20738 0.95072 0.88372
0.93760 1.20130 0.98125 0.95019 0.98244 1.21335 0.98992 0.92514
1.00476 1.21460 0.98477 0.97830 0.96195 1.21498 0.95912 0.99392
0.97232 1.21372 1.00217 0.92962 1.00211 1.21170 0.98257 0.97848
0.95954 1.21399 0.98147 0.90381 0.85134 0.89171 1.21636 1.00574
0.98824 0.93440 1.21992 1.00608 0.96118 0.97788 1.20594 0.94032
0.92003 0.87987 1.44190 1.54987 1.32077 1.01472 1.19532 1.09665
0.96924 1.13449 0.91699 1.25885 0.99105 0.99021 1.00377 1.70208
1.28526 1.33785 1.25592 0.85169 0.79048 0.78315 0.77677 1.18965
1.21174 1.22068 1.21226 0.97016 0.91332 0.89266 0.92989 0.87853
0.88925 0.88939 0.88420 0.83822 0.83472 0.84303 0.85183 0.86681
0.91089 0.92382 0.92204 0.91208 0.92550 0.99703 0.94042 0.96661
0.94368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.94 8.50 71.98 0.61 -1.32 16
2 C -0.01 -0.10 2.30 -13.35 -0.03 -0.13 16
3 H 0.17 1.49 4.96 -2.39 -0.01 1.48 16
4 C 0.23 4.98 12.73 89.44 1.14 6.12 16
5 N -0.45 -12.22 18.54 20.01 0.37 -11.85 16
6 C 0.52 13.96 6.30 87.66 0.55 14.51 16
7 O -0.54 -19.67 12.20 -3.01 -0.04 -19.71 16
8 N -0.59 -15.68 2.41 -801.71 -1.93 -17.61 16
9 C 0.14 2.71 5.18 85.63 0.44 3.15 16
10 C -0.11 -1.93 5.46 -19.87 -0.11 -2.04 16
11 C -0.11 -1.45 9.26 22.27 0.21 -1.24 16
12 C -0.12 -1.41 10.05 22.27 0.22 -1.18 16
13 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16
14 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16
15 C -0.11 -2.10 9.73 22.27 0.22 -1.88 16
16 C 0.15 5.24 2.70 45.07 0.12 5.36 16
17 H 0.09 2.95 7.66 -2.39 -0.02 2.93 16
18 C -0.11 -3.68 5.09 30.62 0.16 -3.52 16
19 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16
20 C 0.18 9.17 5.28 86.36 0.46 9.62 16
21 N -0.60 -32.01 2.99 -699.07 -2.09 -34.10 16
22 C -0.27 -15.17 9.58 84.03 0.81 -14.36 16
23 H 0.07 3.61 7.87 -2.91 -0.02 3.59 16
24 C -0.05 -2.79 4.97 84.86 0.42 -2.36 16
25 N -0.94 -57.33 11.13 21.65 0.24 -57.09 16
26 Si 0.97 45.91 29.58 68.60 2.03 47.94 16
27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
28 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
29 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16
30 C 0.14 6.29 5.77 86.36 0.50 6.79 16
31 H 0.05 1.05 7.99 -2.39 -0.02 1.03 16
32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16
33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16
34 H 0.09 1.78 8.00 -2.39 -0.02 1.76 16
35 H 0.10 1.52 4.96 -2.39 -0.01 1.50 16
36 H 0.14 0.98 6.02 -2.91 -0.02 0.96 16
37 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16
38 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16
39 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16
40 H 0.12 2.25 7.87 -2.91 -0.02 2.22 16
41 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16
42 H 0.06 2.30 6.17 -2.39 -0.01 2.28 16
43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16
45 H 0.06 3.20 6.08 -2.38 -0.01 3.19 16
46 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16
47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16
48 H 0.02 0.79 6.09 -2.39 -0.01 0.77 16
49 H 0.04 1.75 7.93 -2.39 -0.02 1.73 16
Total: -1.00 -76.54 390.19 5.88 -70.65
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: 0.96 Total: 12.15 kcal
Atomic # 6 Polarization: 3.27 SS G_CDS: 6.35 Total: 9.62 kcal
Atomic # 7 Polarization: -117.24 SS G_CDS: -3.41 Total: -120.65 kcal
Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal
Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal
Total: -76.54 5.88 -70.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713761895.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.432 kcal
(2) G-P(sol) polarization free energy of solvation -76.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds