Wall clock time and date at job start Sat Apr 11 2020 06:25:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81404 * 1
3 3 C 1.81404 * 102.99839 * 2 1
4 4 C 1.53005 * 109.46768 * 179.97438 * 3 2 1
5 5 C 1.52997 * 115.54961 * 297.37005 * 4 3 2
6 6 C 1.53003 * 109.47441 * 295.29456 * 5 4 3
7 7 N 1.46494 * 109.47209 * 175.04899 * 6 5 4
8 8 C 1.34778 * 120.00011 * 179.97438 * 7 6 5
9 9 O 1.21588 * 119.99835 * 5.01759 * 8 7 6
10 10 N 1.34777 * 119.99941 * 185.00624 * 8 7 6
11 11 C 1.47076 * 120.87763 * 174.70130 * 10 8 7
12 12 C 1.53703 * 108.27606 * 128.75926 * 11 10 8
13 13 N 1.46901 * 109.25423 * 54.07994 * 12 11 10
14 14 C 1.46904 * 110.99617 * 172.60673 * 13 12 11
15 15 C 1.50697 * 109.47435 * 294.30466 * 14 13 12
16 16 H 1.08003 * 120.00229 * 359.97438 * 15 14 13
17 17 C 1.37873 * 120.00233 * 180.02562 * 15 14 13
18 18 N 1.31522 * 119.99806 * 359.97438 * 17 15 14
19 19 Si 1.86799 * 120.00450 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47122 * 89.99726 * 19 17 15
21 21 H 1.48496 * 109.47296 * 210.00388 * 19 17 15
22 22 H 1.48502 * 109.46907 * 329.99844 * 19 17 15
23 23 C 1.46895 * 111.27105 * 296.75784 * 13 12 11
24 24 C 1.47082 * 120.88178 * 354.98430 * 10 8 7
25 25 C 1.52991 * 117.49721 * 83.04340 * 4 3 2
26 26 C 1.52994 * 117.49562 * 151.70256 * 4 3 2
27 27 H 1.08995 * 109.47244 * 300.00344 * 1 2 3
28 28 H 1.09001 * 109.46481 * 60.00477 * 1 2 3
29 29 H 1.08998 * 109.47175 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.46937 * 59.99558 * 3 2 1
31 31 H 1.08999 * 109.46579 * 299.99371 * 3 2 1
32 32 H 1.08998 * 109.47310 * 175.28674 * 5 4 3
33 33 H 1.09004 * 109.46876 * 55.29170 * 5 4 3
34 34 H 1.09003 * 109.46598 * 295.04674 * 6 5 4
35 35 H 1.08997 * 109.47055 * 55.04634 * 6 5 4
36 36 H 0.97002 * 120.00367 * 359.97438 * 7 6 5
37 37 H 1.09002 * 109.63311 * 248.52257 * 11 10 8
38 38 H 1.09000 * 109.63154 * 9.10550 * 11 10 8
39 39 H 1.09000 * 109.64752 * 294.07725 * 12 11 10
40 40 H 1.08997 * 109.41889 * 173.94612 * 12 11 10
41 41 H 1.08997 * 109.47073 * 54.30812 * 14 13 12
42 42 H 1.08998 * 109.46990 * 174.29995 * 14 13 12
43 43 H 0.97002 * 119.99668 * 179.97438 * 18 17 15
44 44 H 1.08996 * 109.49120 * 303.14498 * 23 13 12
45 45 H 1.09000 * 109.49363 * 183.06609 * 23 13 12
46 46 H 1.08989 * 109.62856 * 350.89450 * 24 10 8
47 47 H 1.09000 * 109.62688 * 111.47501 * 24 10 8
48 48 H 1.09003 * 117.49726 * 214.99858 * 25 4 3
49 49 H 1.08999 * 117.50363 * 0.02562 * 25 4 3
50 50 H 1.09002 * 117.49911 * 359.97438 * 26 4 3
51 51 H 1.09005 * 117.49620 * 144.99460 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7676 0.0000
4 6 3.7424 1.9399 0.0006
5 6 4.4690 1.3839 1.2269
6 6 4.0416 2.1653 2.4709
7 7 4.6452 1.5586 3.6599
8 6 4.4074 2.0830 4.8785
9 8 3.6209 3.0020 5.0019
10 7 5.0413 1.5886 5.9603
11 6 4.8857 2.2189 7.2800
12 6 4.5006 1.1286 8.2925
13 7 5.4894 0.0437 8.2356
14 6 5.2590 -0.9351 9.3066
15 6 5.5060 -0.2847 10.6433
16 1 5.8046 0.7521 10.6925
17 6 5.3517 -1.0133 11.8036
18 7 4.9885 -2.2760 11.7438
19 14 5.6585 -0.2073 13.4606
20 1 4.3948 0.3902 13.9619
21 1 6.1407 -1.2276 14.4257
22 1 6.6839 0.8564 13.3113
23 6 5.4911 -0.6073 6.9188
24 6 5.9119 0.4082 5.8512
25 6 4.4633 1.8561 -1.3461
26 6 4.3099 3.2068 -0.6426
27 1 -0.3633 0.5139 0.8899
28 1 -0.3632 0.5138 -0.8901
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8031 2.2371 0.8899
31 1 1.8032 2.2370 -0.8901
32 1 5.5454 1.4831 1.0874
33 1 4.2146 0.3315 1.3537
34 1 4.3741 3.1996 2.3822
35 1 2.9557 2.1392 2.5611
36 1 5.2160 0.7794 3.5702
37 1 5.8260 2.6832 7.5773
38 1 4.0998 2.9730 7.2353
39 1 3.5138 0.7345 8.0493
40 1 4.4853 1.5547 9.2957
41 1 4.2294 -1.2895 9.2596
42 1 5.9392 -1.7776 9.1812
43 1 4.8803 -2.7887 12.5601
44 1 4.4906 -0.9772 6.6947
45 1 6.1941 -1.4403 6.9257
46 1 5.8049 -0.0355 4.8614
47 1 6.9490 0.7018 6.0137
48 1 5.4555 1.4047 -1.3586
49 1 3.8547 1.6785 -2.2327
50 1 3.6002 3.9172 -1.0666
51 1 5.2010 3.6441 -0.1921
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601624749.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:17
Heat of formation + Delta-G solvation = 4.123355 kcal
Electronic energy + Delta-G solvation = -27572.847417 eV
Core-core repulsion = 23827.390921 eV
Total energy + Delta-G solvation = -3745.456497 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 341.188 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.21898 -38.95512 -37.58068 -34.95599 -34.34956 -32.39022 -31.03263 -30.22372
-29.59516 -28.61248 -27.90611 -25.48450 -23.99191 -23.05742 -22.66155 -22.04585
-20.70237 -19.86664 -18.99562 -17.84432 -16.56440 -16.48653 -16.22843 -15.95519
-15.59554 -15.18019 -14.92878 -14.56199 -14.42779 -14.32104 -14.01833 -13.99767
-13.87115 -13.72672 -13.50359 -13.27899 -12.95172 -12.73878 -12.41552 -12.16900
-11.98259 -11.95721 -11.77662 -11.55846 -11.27153 -11.11594 -10.80991 -10.73867
-10.70104 -10.60683 -10.59382 -10.48019 -9.95968 -9.91541 -9.82160 -9.25837
-9.10333 -8.47203 -8.28504 -7.99297 -7.30303 -6.04999 -4.06655 1.26660
2.22669 2.74768 3.31341 3.34914 3.36770 3.37641 3.41772 3.91535
4.13395 4.22462 4.40242 4.45247 4.48942 4.75875 4.79188 4.80420
4.86136 4.93729 5.11984 5.16041 5.24354 5.24999 5.30149 5.31858
5.34237 5.39695 5.46523 5.49308 5.61437 5.68126 5.70741 5.82627
5.83444 5.87207 5.98667 6.06447 6.22449 6.44772 6.49769 6.58752
6.72584 7.09645 7.23960 7.30425 7.75874 8.02245 8.05389 8.14543
8.49398 8.72535 9.00689 9.57845 11.05835
Molecular weight = 341.19amu
Principal moments of inertia in cm(-1)
A = 0.019517 B = 0.001963 C = 0.001884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1434.315838 B =14262.161078 C =14856.654800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 S -0.251 6.251
3 C -0.051 4.051
4 C -0.109 4.109
5 C -0.094 4.094
6 C 0.145 3.855
7 N -0.750 5.750
8 C 0.707 3.293
9 O -0.598 6.598
10 N -0.625 5.625
11 C 0.133 3.867
12 C 0.051 3.949
13 N -0.535 5.535
14 C 0.194 3.806
15 C -0.508 4.508
16 H 0.064 0.936
17 C 0.055 3.945
18 N -0.898 5.898
19 Si 0.898 3.102
20 H -0.281 1.281
21 H -0.287 1.287
22 H -0.272 1.272
23 C 0.041 3.959
24 C 0.119 3.881
25 C -0.162 4.162
26 C -0.163 4.163
27 H 0.077 0.923
28 H 0.074 0.926
29 H 0.101 0.899
30 H 0.088 0.912
31 H 0.081 0.919
32 H 0.073 0.927
33 H 0.083 0.917
34 H 0.063 0.937
35 H 0.064 0.936
36 H 0.395 0.605
37 H 0.070 0.930
38 H 0.088 0.912
39 H 0.025 0.975
40 H 0.096 0.904
41 H -0.009 1.009
42 H 0.031 0.969
43 H 0.261 0.739
44 H 0.026 0.974
45 H 0.080 0.920
46 H 0.069 0.931
47 H 0.075 0.925
48 H 0.098 0.902
49 H 0.098 0.902
50 H 0.096 0.904
51 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.884 6.987 -28.165 29.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.295 4.295
2 S -0.025 6.025
3 C -0.199 4.199
4 C -0.111 4.111
5 C -0.132 4.132
6 C 0.020 3.980
7 N -0.408 5.408
8 C 0.409 3.591
9 O -0.477 6.477
10 N -0.363 5.363
11 C 0.010 3.990
12 C -0.079 4.079
13 N -0.260 5.260
14 C 0.069 3.931
15 C -0.547 4.547
16 H 0.082 0.918
17 C -0.146 4.146
18 N -0.538 5.538
19 Si 0.726 3.274
20 H -0.207 1.207
21 H -0.213 1.213
22 H -0.197 1.197
23 C -0.089 4.089
24 C -0.005 4.005
25 C -0.199 4.199
26 C -0.202 4.202
27 H 0.096 0.904
28 H 0.093 0.907
29 H 0.120 0.880
30 H 0.107 0.893
31 H 0.100 0.900
32 H 0.092 0.908
33 H 0.102 0.898
34 H 0.081 0.919
35 H 0.082 0.918
36 H 0.231 0.769
37 H 0.088 0.912
38 H 0.107 0.893
39 H 0.043 0.957
40 H 0.114 0.886
41 H 0.009 0.991
42 H 0.049 0.951
43 H 0.071 0.929
44 H 0.045 0.955
45 H 0.099 0.901
46 H 0.087 0.913
47 H 0.093 0.907
48 H 0.117 0.883
49 H 0.116 0.884
50 H 0.115 0.885
51 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -2.391 6.833 -27.872 28.797
hybrid contribution -1.310 0.415 0.787 1.584
sum -3.701 7.249 -27.085 28.281
Atomic orbital electron populations
1.23412 0.94588 1.06612 1.04864 1.86953 1.06806 1.10743 1.97986
1.22956 0.96858 0.94924 1.05129 1.20877 0.91881 1.03400 0.94912
1.21327 0.99631 1.00640 0.91617 1.21047 0.98180 0.96492 0.82242
1.45240 1.55295 1.35013 1.05289 1.15815 0.80802 0.82122 0.80356
1.90879 1.39002 1.32715 1.85076 1.47405 1.49337 1.31477 1.08037
1.21829 1.02025 0.95551 0.79611 1.22446 0.92965 0.92799 0.99644
1.62078 1.48852 1.12966 1.02122 1.19722 0.95130 0.90170 0.88084
1.21143 1.45724 0.97873 0.89964 0.91766 1.24998 0.95357 0.94870
0.99414 1.69962 1.47755 1.07772 1.28289 0.86488 0.78487 0.79037
0.83359 1.20721 1.21287 1.19728 1.22377 0.99751 0.95959 0.90830
1.21755 0.94675 0.85847 0.98199 1.23082 1.01892 1.00131 0.94784
1.23144 1.03098 0.90727 1.03260 0.90391 0.90673 0.88028 0.89314
0.90015 0.90837 0.89837 0.91914 0.91801 0.76885 0.91185 0.89349
0.95705 0.88555 0.99139 0.95074 0.92903 0.95531 0.90123 0.91264
0.90695 0.88324 0.88396 0.88542 0.88085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.80 10.76 101.05 1.09 0.29 16
2 S -0.25 -2.12 21.51 -107.50 -2.31 -4.43 16
3 C -0.05 -0.36 5.59 37.16 0.21 -0.15 16
4 C -0.11 -0.73 1.54 -154.51 -0.24 -0.97 16
5 C -0.09 -0.71 5.05 -26.73 -0.14 -0.84 16
6 C 0.14 1.47 5.59 -4.04 -0.02 1.45 16
7 N -0.75 -8.87 5.46 -65.23 -0.36 -9.23 16
8 C 0.71 11.27 8.31 -86.92 -0.72 10.55 16
9 O -0.60 -11.61 15.80 5.29 0.08 -11.53 16
10 N -0.63 -9.80 3.00 -177.91 -0.53 -10.33 16
11 C 0.13 2.24 6.64 -3.36 -0.02 2.22 16
12 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16
13 N -0.53 -11.19 4.62 -235.47 -1.09 -12.27 16
14 C 0.19 4.95 4.72 -4.98 -0.02 4.93 16
15 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16
16 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16
17 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16
18 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16
19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16
20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
23 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16
24 C 0.12 1.61 6.54 -3.60 -0.02 1.59 16
25 C -0.16 -0.93 9.94 -26.70 -0.27 -1.20 16
26 C -0.16 -0.93 9.95 -26.70 -0.27 -1.19 16
27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16
29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.09 0.68 6.94 -51.93 -0.36 0.32 16
31 H 0.08 0.49 8.11 -51.92 -0.42 0.07 16
32 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16
33 H 0.08 0.69 7.42 -51.93 -0.39 0.31 16
34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.06 0.74 6.81 -51.93 -0.35 0.39 16
36 H 0.39 3.80 6.01 -40.82 -0.25 3.55 16
37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
38 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16
39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16
41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16
42 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16
43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
45 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16
46 H 0.07 0.71 5.74 -51.93 -0.30 0.42 16
47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16
50 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
51 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 414.19 15.07 6.24 6.24
Total: -1.00 -32.75 414.19 -12.13 -44.88
By element:
Atomic # 1 Polarization: 9.55 SS G_CDS: -9.03 Total: 0.52 kcal
Atomic # 6 Polarization: 6.31 SS G_CDS: -0.85 Total: 5.46 kcal
Atomic # 7 Polarization: -56.32 SS G_CDS: -1.24 Total: -57.57 kcal
Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Atomic # 16 Polarization: -2.12 SS G_CDS: -2.31 Total: -4.43 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -32.75 -12.13 -44.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601624749.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.999 kcal
(2) G-P(sol) polarization free energy of solvation -32.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds