Wall clock time and date at job start Sat Apr 11 2020 06:25:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81404 * 1
3 3 C 1.81404 * 102.99839 * 2 1
4 4 C 1.53005 * 109.46768 * 179.97438 * 3 2 1
5 5 C 1.52997 * 115.54961 * 297.37005 * 4 3 2
6 6 C 1.53003 * 109.47441 * 295.29456 * 5 4 3
7 7 N 1.46494 * 109.47209 * 175.04899 * 6 5 4
8 8 C 1.34778 * 120.00011 * 179.97438 * 7 6 5
9 9 O 1.21588 * 119.99835 * 5.01759 * 8 7 6
10 10 N 1.34777 * 119.99941 * 185.00624 * 8 7 6
11 11 C 1.47076 * 120.87763 * 174.70130 * 10 8 7
12 12 C 1.53703 * 108.27606 * 128.75926 * 11 10 8
13 13 N 1.46901 * 109.25423 * 54.07994 * 12 11 10
14 14 C 1.46904 * 110.99617 * 172.60673 * 13 12 11
15 15 C 1.50697 * 109.47435 * 294.30466 * 14 13 12
16 16 H 1.08003 * 120.00229 * 359.97438 * 15 14 13
17 17 C 1.37873 * 120.00233 * 180.02562 * 15 14 13
18 18 N 1.31522 * 119.99806 * 359.97438 * 17 15 14
19 19 Si 1.86799 * 120.00450 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47122 * 89.99726 * 19 17 15
21 21 H 1.48496 * 109.47296 * 210.00388 * 19 17 15
22 22 H 1.48502 * 109.46907 * 329.99844 * 19 17 15
23 23 C 1.46895 * 111.27105 * 296.75784 * 13 12 11
24 24 C 1.47082 * 120.88178 * 354.98430 * 10 8 7
25 25 C 1.52991 * 117.49721 * 83.04340 * 4 3 2
26 26 C 1.52994 * 117.49562 * 151.70256 * 4 3 2
27 27 H 1.08995 * 109.47244 * 300.00344 * 1 2 3
28 28 H 1.09001 * 109.46481 * 60.00477 * 1 2 3
29 29 H 1.08998 * 109.47175 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.46937 * 59.99558 * 3 2 1
31 31 H 1.08999 * 109.46579 * 299.99371 * 3 2 1
32 32 H 1.08998 * 109.47310 * 175.28674 * 5 4 3
33 33 H 1.09004 * 109.46876 * 55.29170 * 5 4 3
34 34 H 1.09003 * 109.46598 * 295.04674 * 6 5 4
35 35 H 1.08997 * 109.47055 * 55.04634 * 6 5 4
36 36 H 0.97002 * 120.00367 * 359.97438 * 7 6 5
37 37 H 1.09002 * 109.63311 * 248.52257 * 11 10 8
38 38 H 1.09000 * 109.63154 * 9.10550 * 11 10 8
39 39 H 1.09000 * 109.64752 * 294.07725 * 12 11 10
40 40 H 1.08997 * 109.41889 * 173.94612 * 12 11 10
41 41 H 1.08997 * 109.47073 * 54.30812 * 14 13 12
42 42 H 1.08998 * 109.46990 * 174.29995 * 14 13 12
43 43 H 0.97002 * 119.99668 * 179.97438 * 18 17 15
44 44 H 1.08996 * 109.49120 * 303.14498 * 23 13 12
45 45 H 1.09000 * 109.49363 * 183.06609 * 23 13 12
46 46 H 1.08989 * 109.62856 * 350.89450 * 24 10 8
47 47 H 1.09000 * 109.62688 * 111.47501 * 24 10 8
48 48 H 1.09003 * 117.49726 * 214.99858 * 25 4 3
49 49 H 1.08999 * 117.50363 * 0.02562 * 25 4 3
50 50 H 1.09002 * 117.49911 * 359.97438 * 26 4 3
51 51 H 1.09005 * 117.49620 * 144.99460 * 26 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7676 0.0000
4 6 3.7424 1.9399 0.0006
5 6 4.4690 1.3839 1.2269
6 6 4.0416 2.1653 2.4709
7 7 4.6452 1.5586 3.6599
8 6 4.4074 2.0830 4.8785
9 8 3.6209 3.0020 5.0019
10 7 5.0413 1.5886 5.9603
11 6 4.8857 2.2189 7.2800
12 6 4.5006 1.1286 8.2925
13 7 5.4894 0.0437 8.2356
14 6 5.2590 -0.9351 9.3066
15 6 5.5060 -0.2847 10.6433
16 1 5.8046 0.7521 10.6925
17 6 5.3517 -1.0133 11.8036
18 7 4.9885 -2.2760 11.7438
19 14 5.6585 -0.2073 13.4606
20 1 4.3948 0.3902 13.9619
21 1 6.1407 -1.2276 14.4257
22 1 6.6839 0.8564 13.3113
23 6 5.4911 -0.6073 6.9188
24 6 5.9119 0.4082 5.8512
25 6 4.4633 1.8561 -1.3461
26 6 4.3099 3.2068 -0.6426
27 1 -0.3633 0.5139 0.8899
28 1 -0.3632 0.5138 -0.8901
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8031 2.2371 0.8899
31 1 1.8032 2.2370 -0.8901
32 1 5.5454 1.4831 1.0874
33 1 4.2146 0.3315 1.3537
34 1 4.3741 3.1996 2.3822
35 1 2.9557 2.1392 2.5611
36 1 5.2160 0.7794 3.5702
37 1 5.8260 2.6832 7.5773
38 1 4.0998 2.9730 7.2353
39 1 3.5138 0.7345 8.0493
40 1 4.4853 1.5547 9.2957
41 1 4.2294 -1.2895 9.2596
42 1 5.9392 -1.7776 9.1812
43 1 4.8803 -2.7887 12.5601
44 1 4.4906 -0.9772 6.6947
45 1 6.1941 -1.4403 6.9257
46 1 5.8049 -0.0355 4.8614
47 1 6.9490 0.7018 6.0137
48 1 5.4555 1.4047 -1.3586
49 1 3.8547 1.6785 -2.2327
50 1 3.6002 3.9172 -1.0666
51 1 5.2010 3.6441 -0.1921
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601624749.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:16
Heat of formation + Delta-G solvation = -16.250895 kcal
Electronic energy + Delta-G solvation = -27573.730911 eV
Core-core repulsion = 23827.390921 eV
Total energy + Delta-G solvation = -3746.339990 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 341.188 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.45682 -39.60871 -38.98130 -36.02428 -35.94218 -34.36984 -32.25976 -31.23061
-30.19031 -29.76165 -29.00518 -27.18650 -25.06297 -24.23509 -23.83681 -23.15093
-22.13702 -20.83838 -19.92279 -19.03577 -18.49073 -17.47164 -17.17470 -16.90147
-16.72657 -16.28537 -16.05246 -15.98735 -15.77152 -15.39367 -15.21342 -15.08026
-14.94772 -14.74291 -14.52521 -14.22582 -14.02742 -13.85547 -13.51161 -13.36448
-13.11804 -13.04231 -12.73759 -12.59451 -12.50296 -12.39054 -12.31037 -12.29408
-12.18409 -12.15691 -11.73866 -11.40177 -11.24020 -11.21272 -11.03252 -10.61855
-10.45221 -10.24585 -9.58513 -9.04675 -8.63476 -8.20495 -6.30268 0.71582
1.42800 1.43471 1.55183 1.60057 1.68090 2.09356 2.40940 2.81941
2.93806 3.11805 3.23001 3.61860 3.70147 3.89542 3.95374 3.97016
4.06352 4.13960 4.24457 4.26215 4.29272 4.30518 4.32936 4.43640
4.52998 4.53344 4.59354 4.68968 4.71882 4.84161 4.84763 4.85746
4.94857 4.99311 5.02478 5.08253 5.14591 5.17318 5.20704 5.23569
5.29896 5.45172 5.50910 5.64194 5.92744 6.03536 6.25664 6.57963
6.85280 6.93330 7.39444 7.51226 8.90654
Molecular weight = 341.19amu
Principal moments of inertia in cm(-1)
A = 0.019517 B = 0.001963 C = 0.001884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1434.315838 B =14262.161078 C =14856.654800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 S -0.296 6.296
3 C -0.040 4.040
4 C -0.123 4.123
5 C -0.082 4.082
6 C 0.148 3.852
7 N -0.734 5.734
8 C 0.704 3.296
9 O -0.636 6.636
10 N -0.629 5.629
11 C 0.145 3.855
12 C 0.056 3.944
13 N -0.537 5.537
14 C 0.209 3.791
15 C -0.522 4.522
16 H 0.066 0.934
17 C 0.001 3.999
18 N -0.935 5.935
19 Si 0.969 3.031
20 H -0.275 1.275
21 H -0.283 1.283
22 H -0.262 1.262
23 C 0.037 3.963
24 C 0.127 3.873
25 C -0.155 4.155
26 C -0.157 4.157
27 H 0.075 0.925
28 H 0.088 0.912
29 H 0.106 0.894
30 H 0.078 0.922
31 H 0.093 0.907
32 H 0.089 0.911
33 H 0.077 0.923
34 H 0.060 0.940
35 H 0.047 0.953
36 H 0.408 0.592
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.006 0.994
40 H 0.080 0.920
41 H -0.044 1.044
42 H 0.012 0.988
43 H 0.264 0.736
44 H 0.015 0.985
45 H 0.090 0.910
46 H 0.108 0.892
47 H 0.090 0.910
48 H 0.104 0.896
49 H 0.100 0.900
50 H 0.103 0.897
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.677 8.017 -29.696 30.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.287 4.287
2 S -0.070 6.070
3 C -0.188 4.188
4 C -0.124 4.124
5 C -0.120 4.120
6 C 0.024 3.976
7 N -0.392 5.392
8 C 0.405 3.595
9 O -0.518 6.518
10 N -0.366 5.366
11 C 0.021 3.979
12 C -0.073 4.073
13 N -0.261 5.261
14 C 0.082 3.918
15 C -0.561 4.561
16 H 0.084 0.916
17 C -0.197 4.197
18 N -0.575 5.575
19 Si 0.794 3.206
20 H -0.201 1.201
21 H -0.208 1.208
22 H -0.187 1.187
23 C -0.092 4.092
24 C 0.005 3.995
25 C -0.192 4.192
26 C -0.196 4.196
27 H 0.094 0.906
28 H 0.107 0.893
29 H 0.125 0.875
30 H 0.097 0.903
31 H 0.111 0.889
32 H 0.107 0.893
33 H 0.095 0.905
34 H 0.078 0.922
35 H 0.065 0.935
36 H 0.246 0.754
37 H 0.100 0.900
38 H 0.103 0.897
39 H 0.025 0.975
40 H 0.099 0.901
41 H -0.026 1.026
42 H 0.030 0.970
43 H 0.073 0.927
44 H 0.033 0.967
45 H 0.109 0.891
46 H 0.126 0.874
47 H 0.108 0.892
48 H 0.123 0.877
49 H 0.119 0.881
50 H 0.121 0.879
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -1.161 7.848 -29.455 30.505
hybrid contribution -1.735 0.065 1.188 2.104
sum -2.896 7.912 -28.268 29.497
Atomic orbital electron populations
1.23432 0.92635 1.07168 1.05452 1.87047 1.09167 1.12710 1.98075
1.22922 0.97297 0.93415 1.05159 1.20878 0.91612 1.04741 0.95206
1.21219 1.00553 0.99700 0.90529 1.21107 0.97142 0.96811 0.82551
1.45156 1.54759 1.34909 1.04375 1.15981 0.80358 0.81882 0.81240
1.90854 1.40635 1.34550 1.85749 1.47418 1.49636 1.31986 1.07544
1.21593 1.02400 0.94225 0.79637 1.22372 0.91905 0.93091 0.99910
1.62011 1.48894 1.12282 1.02946 1.19377 0.92407 0.90477 0.89497
1.21466 1.45496 0.98048 0.91059 0.91567 1.25918 0.94971 0.95386
1.03467 1.70089 1.48736 1.09268 1.29433 0.85380 0.78653 0.78201
0.78379 1.20100 1.20845 1.18657 1.22534 0.99615 0.97361 0.89728
1.21844 0.94754 0.84188 0.98742 1.23122 1.01968 1.00004 0.94075
1.23212 1.03168 0.90603 1.02621 0.90580 0.89286 0.87528 0.90312
0.88855 0.89284 0.90486 0.92198 0.93471 0.75355 0.89972 0.89709
0.97530 0.90133 1.02592 0.97033 0.92727 0.96660 0.89124 0.87389
0.89165 0.87714 0.88116 0.87854 0.87683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.41 10.76 113.37 1.22 -0.19 16
2 S -0.30 -4.80 21.51 -56.49 -1.22 -6.01 16
3 C -0.04 -0.53 5.59 71.98 0.40 -0.12 16
4 C -0.12 -1.44 1.54 -52.19 -0.08 -1.52 16
5 C -0.08 -1.08 5.05 30.59 0.15 -0.92 16
6 C 0.15 2.81 5.59 86.38 0.48 3.29 16
7 N -0.73 -15.92 5.46 -478.54 -2.62 -18.54 16
8 C 0.70 21.53 8.31 179.05 1.49 23.02 16
9 O -0.64 -24.49 15.80 -3.99 -0.06 -24.55 16
10 N -0.63 -18.78 3.00 -835.04 -2.51 -21.29 16
11 C 0.15 4.82 6.64 86.51 0.57 5.39 16
12 C 0.06 2.26 5.47 86.54 0.47 2.73 16
13 N -0.54 -22.63 4.62 -898.88 -4.15 -26.78 16
14 C 0.21 11.01 4.72 85.56 0.40 11.41 16
15 C -0.52 -29.26 8.41 25.60 0.22 -29.04 16
16 H 0.07 3.61 7.13 -2.91 -0.02 3.59 16
17 C 0.00 0.03 5.46 84.65 0.46 0.49 16
18 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16
19 Si 0.97 44.11 29.54 68.60 2.03 46.14 16
20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16
21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16
23 C 0.04 1.22 5.62 86.38 0.49 1.71 16
24 C 0.13 3.14 6.54 86.35 0.56 3.70 16
25 C -0.15 -1.43 9.94 30.61 0.30 -1.13 16
26 C -0.16 -1.43 9.95 30.62 0.30 -1.13 16
27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16
30 H 0.08 1.18 6.94 -2.39 -0.02 1.16 16
31 H 0.09 0.98 8.11 -2.39 -0.02 0.96 16
32 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16
33 H 0.08 1.15 7.42 -2.38 -0.02 1.13 16
34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
35 H 0.05 1.08 6.81 -2.39 -0.02 1.06 16
36 H 0.41 6.61 6.01 -92.71 -0.56 6.06 16
37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16
38 H 0.08 2.91 7.04 -2.39 -0.02 2.89 16
39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16
40 H 0.08 3.44 6.67 -2.39 -0.02 3.42 16
41 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16
42 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16
43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16
44 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16
45 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16
46 H 0.11 1.83 5.74 -2.39 -0.01 1.82 16
47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
48 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
49 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16
50 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16
51 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16
Total: -1.00 -72.17 414.19 -0.44 -72.61
By element:
Atomic # 1 Polarization: 16.21 SS G_CDS: 0.35 Total: 16.56 kcal
Atomic # 6 Polarization: 10.25 SS G_CDS: 7.46 Total: 17.71 kcal
Atomic # 7 Polarization: -113.46 SS G_CDS: -8.99 Total: -122.45 kcal
Atomic # 8 Polarization: -24.49 SS G_CDS: -0.06 Total: -24.55 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Atomic # 16 Polarization: -4.80 SS G_CDS: -1.22 Total: -6.01 kcal
Total: -72.17 -0.44 -72.61 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601624749.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.362 kcal
(2) G-P(sol) polarization free energy of solvation -72.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.810 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds