Wall clock time and date at job start Sat Apr 11 2020 06:25:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53001 * 112.85274 * 2 1
4 4 C 1.53779 * 113.61798 * 228.68676 * 2 1 3
5 5 C 1.53783 * 87.08591 * 220.02158 * 4 2 1
6 6 C 1.53778 * 87.07897 * 25.43247 * 5 4 2
7 7 H 1.08997 * 113.69022 * 220.00873 * 6 5 4
8 8 C 1.50702 * 113.61506 * 89.11441 * 6 5 4
9 9 O 1.21277 * 119.99709 * 346.60454 * 8 6 5
10 10 N 1.34774 * 120.00056 * 166.60264 * 8 6 5
11 11 C 1.46504 * 120.00103 * 184.89603 * 10 8 6
12 12 C 1.52996 * 109.46865 * 264.79519 * 11 10 8
13 13 O 1.42900 * 109.47294 * 65.49790 * 12 11 10
14 14 C 1.46501 * 120.00263 * 4.89344 * 10 8 6
15 15 C 1.53000 * 109.47133 * 270.00603 * 14 10 8
16 16 N 1.46905 * 109.47206 * 180.02562 * 15 14 10
17 17 C 1.46897 * 110.99949 * 179.97438 * 16 15 14
18 18 C 1.50708 * 109.46730 * 179.97438 * 17 16 15
19 19 O 1.21286 * 120.00309 * 359.97438 * 18 17 16
20 20 N 1.34778 * 119.99620 * 179.97438 * 18 17 16
21 21 C 1.37097 * 119.99658 * 179.97438 * 20 18 17
22 22 H 1.08001 * 120.00077 * 359.97438 * 21 20 18
23 23 C 1.38953 * 119.99827 * 180.02562 * 21 20 18
24 24 N 1.31411 * 119.99863 * 180.02562 * 23 21 20
25 25 Si 1.86801 * 119.99959 * 359.97438 * 23 21 20
26 26 H 1.48508 * 109.46868 * 90.00544 * 25 23 21
27 27 H 1.48502 * 109.47125 * 209.99896 * 25 23 21
28 28 H 1.48497 * 109.47307 * 330.00456 * 25 23 21
29 29 H 1.09005 * 109.47471 * 293.82799 * 1 2 3
30 30 H 1.09003 * 109.46926 * 53.82248 * 1 2 3
31 31 H 1.08997 * 109.47431 * 173.82097 * 1 2 3
32 32 H 1.08997 * 109.47262 * 191.19288 * 3 2 1
33 33 H 1.08998 * 109.46839 * 311.18979 * 3 2 1
34 34 H 1.08997 * 109.47119 * 71.19015 * 3 2 1
35 35 H 1.09002 * 113.61251 * 334.57347 * 4 2 1
36 36 H 1.09006 * 113.61649 * 105.47093 * 4 2 1
37 37 H 1.08996 * 113.61293 * 270.88222 * 5 4 2
38 38 H 1.09000 * 113.60970 * 139.98044 * 5 4 2
39 39 H 1.09002 * 109.46989 * 24.79249 * 11 10 8
40 40 H 1.09000 * 109.46887 * 144.79461 * 11 10 8
41 41 H 1.09008 * 109.47012 * 185.49950 * 12 11 10
42 42 H 1.09000 * 109.47327 * 305.49463 * 12 11 10
43 43 H 0.96706 * 113.99734 * 180.02562 * 13 12 11
44 44 H 1.08994 * 109.47543 * 149.99832 * 14 10 8
45 45 H 1.09004 * 109.46814 * 30.00078 * 14 10 8
46 46 H 1.09004 * 109.46841 * 299.99458 * 15 14 10
47 47 H 1.08994 * 109.47536 * 59.99224 * 15 14 10
48 48 H 1.00909 * 110.99187 * 303.94680 * 16 15 14
49 49 H 1.09002 * 109.46840 * 299.98834 * 17 16 15
50 50 H 1.08997 * 109.47549 * 59.99490 * 17 16 15
51 51 H 0.97004 * 120.00151 * 0.02562 * 20 18 17
52 52 H 0.96999 * 120.00133 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.1241 1.4099 0.0000
4 6 2.1460 -0.9302 -1.0583
5 6 3.1923 -1.3136 0.0015
6 6 2.1460 -0.9280 1.0603
7 1 2.5636 -0.3970 1.9157
8 6 1.2451 -2.0675 1.4619
9 8 1.2184 -3.0822 0.7981
10 7 0.4693 -1.9589 2.5585
11 6 -0.3252 -3.1040 3.0101
12 6 -1.7439 -2.9937 2.4480
13 8 -1.7030 -3.1126 1.0246
14 6 0.4203 -0.6959 3.2992
15 6 1.5041 -0.6956 4.3791
16 7 1.4547 0.5707 5.1222
17 6 2.4832 0.6065 6.1704
18 6 2.4022 1.9176 6.9090
19 8 1.5699 2.7413 6.5931
20 7 3.2547 2.1748 7.9208
21 6 3.1813 3.3677 8.5924
22 1 2.4407 4.1015 8.3105
23 6 4.0605 3.6332 9.6352
24 7 3.9899 4.7764 10.2792
25 14 5.3419 2.3643 10.1223
26 1 6.5862 2.5936 9.3447
27 1 5.6349 2.4883 11.5728
28 1 4.8236 1.0024 9.8365
29 1 -0.3634 0.4152 0.9401
30 1 -0.3633 0.6066 -0.8296
31 1 -0.3634 -1.0216 -0.1106
32 1 3.1942 1.3532 -0.1995
33 1 1.6416 2.0075 -0.7733
34 1 1.9599 1.8734 0.9727
35 1 1.4945 -1.7549 -1.3471
36 1 2.5651 -0.4009 -1.9141
37 1 4.0711 -0.6688 0.0008
38 1 3.4442 -2.3741 0.0025
39 1 0.1347 -4.0271 2.6571
40 1 -0.3654 -3.1114 4.0993
41 1 -2.3616 -3.7910 2.8616
42 1 -2.1683 -2.0272 2.7199
43 1 -2.5696 -3.0514 0.5997
44 1 -0.5583 -0.5862 3.7664
45 1 0.5906 0.1342 2.6134
46 1 1.3339 -1.5257 5.0648
47 1 2.4827 -0.8052 3.9119
48 1 1.5453 1.3592 4.4991
49 1 2.3195 -0.2147 6.8682
50 1 3.4688 0.5061 5.7159
51 1 3.9206 1.5162 8.1733
52 1 4.6034 4.9616 11.0074
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700035591.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:08
Heat of formation + Delta-G solvation = -122.935678 kcal
Electronic energy + Delta-G solvation = -31183.178283 eV
Core-core repulsion = 26989.459222 eV
Total energy + Delta-G solvation = -4193.719061 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.06003 -40.28224 -39.32906 -37.76996 -37.40155 -36.09848 -35.51206 -33.72594
-31.66447 -31.51436 -30.02595 -28.33834 -27.75628 -27.24923 -25.43407 -24.00153
-23.48600 -22.98122 -21.29878 -20.75609 -20.24611 -18.92021 -18.33914 -18.24277
-17.78453 -17.06684 -17.02583 -16.63197 -16.48479 -15.87535 -15.81766 -15.53030
-15.30874 -15.08561 -14.90044 -14.74225 -14.59497 -14.39133 -14.22128 -14.08282
-13.81033 -13.69009 -13.40665 -13.18563 -13.04789 -13.01785 -12.94455 -12.73210
-12.41078 -12.39840 -12.27116 -12.16479 -12.00531 -11.96968 -11.81616 -11.49337
-11.07732 -10.98773 -10.92410 -10.56805 -10.43829 -10.23052 -9.66218 -9.35269
-8.39708 -6.00338 1.31758 1.36626 1.45658 1.65626 1.92377 1.98051
2.24283 2.77322 3.17181 3.32672 3.45676 3.46886 3.57744 3.68485
3.83942 3.93832 4.03940 4.11937 4.18079 4.26773 4.29730 4.30891
4.45522 4.46132 4.52823 4.56928 4.59951 4.64747 4.67358 4.75133
4.78516 4.82063 4.88351 4.92094 4.97287 5.02795 5.03163 5.15540
5.21156 5.28261 5.42680 5.52916 5.56031 5.61082 5.89172 6.01788
6.36577 6.43904 6.61242 6.90138 6.92953 7.28643 7.41968 7.98235
8.77866
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014656 B = 0.002382 C = 0.002244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1910.005628 B =11751.686493 C =12472.391925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.061 4.061
3 C -0.128 4.128
4 C -0.128 4.128
5 C -0.118 4.118
6 C -0.140 4.140
7 H 0.103 0.897
8 C 0.541 3.459
9 O -0.562 6.562
10 N -0.600 5.600
11 C 0.108 3.892
12 C 0.061 3.939
13 O -0.583 6.583
14 C 0.115 3.885
15 C 0.048 3.952
16 N -0.678 5.678
17 C 0.063 3.937
18 C 0.450 3.550
19 O -0.612 6.612
20 N -0.592 5.592
21 C -0.327 4.327
22 H 0.057 0.943
23 C -0.015 4.015
24 N -0.935 5.935
25 Si 0.963 3.037
26 H -0.257 1.257
27 H -0.277 1.277
28 H -0.231 1.231
29 H 0.059 0.941
30 H 0.064 0.936
31 H 0.046 0.954
32 H 0.067 0.933
33 H 0.069 0.931
34 H 0.062 0.938
35 H 0.064 0.936
36 H 0.080 0.920
37 H 0.105 0.895
38 H 0.059 0.941
39 H 0.070 0.930
40 H 0.114 0.886
41 H 0.070 0.930
42 H 0.054 0.946
43 H 0.386 0.614
44 H 0.095 0.905
45 H 0.085 0.915
46 H 0.083 0.917
47 H 0.038 0.962
48 H 0.348 0.652
49 H 0.113 0.887
50 H 0.077 0.923
51 H 0.389 0.611
52 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.663 -17.891 -19.741 27.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.061 4.061
3 C -0.185 4.185
4 C -0.165 4.165
5 C -0.156 4.156
6 C -0.161 4.161
7 H 0.121 0.879
8 C 0.330 3.670
9 O -0.440 6.440
10 N -0.332 5.332
11 C -0.015 4.015
12 C -0.018 4.018
13 O -0.389 6.389
14 C -0.009 4.009
15 C -0.082 4.082
16 N -0.311 5.311
17 C -0.069 4.069
18 C 0.237 3.763
19 O -0.496 6.496
20 N -0.234 5.234
21 C -0.456 4.456
22 H 0.075 0.925
23 C -0.214 4.214
24 N -0.576 5.576
25 Si 0.783 3.217
26 H -0.182 1.182
27 H -0.202 1.202
28 H -0.154 1.154
29 H 0.078 0.922
30 H 0.083 0.917
31 H 0.065 0.935
32 H 0.086 0.914
33 H 0.088 0.912
34 H 0.081 0.919
35 H 0.083 0.917
36 H 0.099 0.901
37 H 0.123 0.877
38 H 0.077 0.923
39 H 0.088 0.912
40 H 0.132 0.868
41 H 0.088 0.912
42 H 0.072 0.928
43 H 0.235 0.765
44 H 0.114 0.886
45 H 0.103 0.897
46 H 0.101 0.899
47 H 0.056 0.944
48 H 0.167 0.833
49 H 0.131 0.869
50 H 0.095 0.905
51 H 0.225 0.775
52 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -5.043 -18.032 -19.598 27.104
hybrid contribution 0.717 0.067 0.266 0.767
sum -4.327 -17.965 -19.331 26.742
Atomic orbital electron populations
1.21813 0.94008 1.01544 1.02186 1.21704 0.95368 0.94779 0.94278
1.21632 1.01170 0.92927 1.02800 1.22975 0.97895 0.98582 0.97096
1.22735 0.96626 1.01636 0.94612 1.22721 0.97797 0.96075 0.99513
0.87904 1.20199 0.79454 0.87815 0.79502 1.90660 1.67685 1.32975
1.52681 1.47733 1.44767 1.13494 1.27252 1.21688 0.90504 0.89228
1.00035 1.22637 0.96836 1.00796 0.81544 1.86651 1.35702 1.96577
1.19995 1.21548 1.00526 0.85268 0.93532 1.22394 0.97995 0.92176
0.95651 1.59951 1.50160 1.04913 1.16112 1.21614 0.95467 0.94423
0.95423 1.20960 0.82505 0.90328 0.82459 1.90547 1.39408 1.50819
1.68809 1.42047 1.32906 1.16731 1.31707 1.19008 1.18030 0.94417
1.14158 0.92525 1.26101 1.00366 0.99335 0.95586 1.69802 1.39359
1.25243 1.23171 0.85386 0.78417 0.79233 0.78617 1.18193 1.20246
1.15388 0.92225 0.91676 0.93481 0.91418 0.91182 0.91890 0.91696
0.90142 0.87708 0.92268 0.91156 0.86805 0.91190 0.92825 0.76544
0.88631 0.89670 0.89857 0.94390 0.83341 0.86898 0.90546 0.77513
0.91198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 8.25 71.98 0.59 -1.82 16
2 C -0.06 -1.01 1.20 -51.66 -0.06 -1.07 16
3 C -0.13 -1.76 9.07 71.98 0.65 -1.10 16
4 C -0.13 -2.33 6.81 31.12 0.21 -2.12 16
5 C -0.12 -2.14 7.08 31.12 0.22 -1.92 16
6 C -0.14 -2.58 2.55 -11.01 -0.03 -2.61 16
7 H 0.10 1.70 6.04 -2.39 -0.01 1.69 16
8 C 0.54 12.24 5.01 87.66 0.44 12.68 16
9 O -0.56 -16.94 14.39 -2.71 -0.04 -16.97 16
10 N -0.60 -10.87 2.44 -821.81 -2.00 -12.87 16
11 C 0.11 1.75 5.83 86.38 0.50 2.25 16
12 C 0.06 0.84 7.38 71.98 0.53 1.38 16
13 O -0.58 -10.83 12.89 -148.67 -1.92 -12.75 16
14 C 0.11 1.85 5.14 86.38 0.44 2.29 16
15 C 0.05 0.84 5.86 86.30 0.51 1.34 16
16 N -0.68 -16.89 6.13 -517.92 -3.17 -20.06 16
17 C 0.06 1.73 6.17 85.56 0.53 2.26 16
18 C 0.45 19.14 7.82 87.66 0.69 19.83 16
19 O -0.61 -32.22 15.78 -3.05 -0.05 -32.27 16
20 N -0.59 -26.84 5.09 -306.98 -1.56 -28.40 16
21 C -0.33 -18.70 10.16 84.04 0.85 -17.84 16
22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16
23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16
24 N -0.93 -55.65 13.96 21.66 0.30 -55.35 16
25 Si 0.96 37.89 27.74 68.60 1.90 39.79 16
26 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16
27 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16
28 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16
29 H 0.06 1.00 6.48 -2.38 -0.02 0.98 16
30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.05 1.03 7.09 -2.39 -0.02 1.01 16
32 H 0.07 0.83 7.35 -2.39 -0.02 0.82 16
33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
35 H 0.06 1.50 7.49 -2.39 -0.02 1.48 16
36 H 0.08 1.21 8.10 -2.38 -0.02 1.19 16
37 H 0.10 1.47 7.66 -2.39 -0.02 1.45 16
38 H 0.06 1.28 7.65 -2.39 -0.02 1.27 16
39 H 0.07 1.46 7.34 -2.39 -0.02 1.44 16
40 H 0.11 1.26 8.11 -2.39 -0.02 1.24 16
41 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16
42 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
43 H 0.39 3.96 9.12 -74.05 -0.68 3.29 16
44 H 0.10 1.48 8.07 -2.39 -0.02 1.46 16
45 H 0.09 1.37 5.01 -2.38 -0.01 1.36 16
46 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16
47 H 0.04 0.64 6.97 -2.39 -0.02 0.62 16
48 H 0.35 9.16 8.43 -89.69 -0.76 8.40 16
49 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16
50 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
51 H 0.39 14.53 5.76 -92.71 -0.53 14.00 16
52 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16
Total: -1.00 -81.06 410.47 -1.06 -82.13
By element:
Atomic # 1 Polarization: 44.64 SS G_CDS: -1.07 Total: 43.57 kcal
Atomic # 6 Polarization: 6.63 SS G_CDS: 6.55 Total: 13.18 kcal
Atomic # 7 Polarization: -110.24 SS G_CDS: -6.43 Total: -116.68 kcal
Atomic # 8 Polarization: -59.99 SS G_CDS: -2.00 Total: -61.99 kcal
Atomic # 14 Polarization: 37.89 SS G_CDS: 1.90 Total: 39.79 kcal
Total: -81.06 -1.06 -82.13 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700035591.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.808 kcal
(2) G-P(sol) polarization free energy of solvation -81.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.873 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds