Wall clock time and date at job start Sat Apr 11 2020 06:25:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53002 * 109.47173 * 2 1
4 4 C 1.53004 * 109.46988 * 177.91849 * 3 2 1
5 5 H 1.08994 * 109.46802 * 305.64726 * 4 3 2
6 6 O 1.42893 * 109.47112 * 65.65417 * 4 3 2
7 7 C 1.42910 * 113.99689 * 258.97010 * 6 4 3
8 8 C 1.50697 * 109.46696 * 185.65119 * 4 3 2
9 9 O 1.21284 * 119.99972 * 251.71653 * 8 4 3
10 10 N 1.34779 * 120.00439 * 71.72227 * 8 4 3
11 11 C 1.47419 * 125.64426 * 5.32524 * 10 8 4
12 12 C 1.54914 * 104.83052 * 204.09507 * 11 10 8
13 13 C 1.55160 * 101.57969 * 322.98885 * 12 11 10
14 14 H 1.08995 * 110.71985 * 276.96151 * 13 12 11
15 15 N 1.46898 * 110.72035 * 153.86804 * 13 12 11
16 16 C 1.46902 * 111.00338 * 86.44915 * 15 13 12
17 17 C 1.50696 * 109.47120 * 179.97438 * 16 15 13
18 18 O 1.21287 * 120.00342 * 0.02562 * 17 16 15
19 19 N 1.34776 * 119.99551 * 180.02562 * 17 16 15
20 20 C 1.37102 * 119.99713 * 180.02562 * 19 17 16
21 21 H 1.08000 * 119.99949 * 0.02562 * 20 19 17
22 22 C 1.38948 * 120.00035 * 180.02562 * 20 19 17
23 23 N 1.31409 * 119.99972 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 120.00261 * 180.02562 * 22 20 19
25 25 H 1.48508 * 109.47019 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47530 * 119.99978 * 24 22 20
27 27 H 1.48508 * 109.46937 * 240.00023 * 24 22 20
28 28 C 1.47022 * 125.64868 * 185.01956 * 10 8 4
29 29 H 1.09000 * 109.88175 * 298.39042 * 28 10 8
30 30 C 1.53003 * 109.88297 * 59.55748 * 28 10 8
31 31 H 1.09000 * 109.47160 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46982 * 299.99492 * 1 2 3
33 33 H 1.08996 * 109.47213 * 59.99581 * 1 2 3
34 34 H 1.09001 * 109.46982 * 240.00508 * 2 1 3
35 35 H 1.08996 * 109.47213 * 120.00419 * 2 1 3
36 36 H 1.09006 * 109.46795 * 57.91964 * 3 2 1
37 37 H 1.08994 * 109.47418 * 297.91972 * 3 2 1
38 38 H 1.09002 * 109.46897 * 173.72807 * 7 6 4
39 39 H 1.09002 * 109.46789 * 53.72958 * 7 6 4
40 40 H 1.08994 * 109.47006 * 293.72762 * 7 6 4
41 41 H 1.09001 * 110.37005 * 322.92558 * 11 10 8
42 42 H 1.08991 * 110.37046 * 85.14446 * 11 10 8
43 43 H 1.09001 * 111.00674 * 81.06332 * 12 11 10
44 44 H 1.08998 * 111.00163 * 204.88091 * 12 11 10
45 45 H 1.00908 * 110.99803 * 322.49767 * 15 13 12
46 46 H 1.08999 * 109.47301 * 300.00850 * 16 15 13
47 47 H 1.09005 * 109.46180 * 60.00355 * 16 15 13
48 48 H 0.96995 * 120.00587 * 0.02562 * 19 17 16
49 49 H 0.97008 * 120.00501 * 180.02562 * 23 22 20
50 50 H 1.08998 * 109.46976 * 58.54980 * 30 28 10
51 51 H 1.09004 * 109.46739 * 178.54421 * 30 28 10
52 52 H 1.08993 * 109.46840 * 298.54479 * 30 28 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5691 1.4428 0.0524
5 1 3.9034 0.8541 0.9066
6 8 4.0870 0.8727 -1.1512
7 6 4.5121 -0.4850 -1.0152
8 6 4.0666 2.8584 0.1923
9 8 4.6116 3.4049 -0.7433
10 7 3.9060 3.5172 1.3571
11 6 3.3652 2.9419 2.6020
12 6 2.8146 4.1548 3.3929
13 6 3.8647 5.2471 3.0588
14 1 4.7331 5.1598 3.7118
15 7 3.2717 6.5871 3.1623
16 6 3.3447 7.0902 4.5405
17 6 2.7288 8.4639 4.6071
18 8 2.2733 8.9736 3.6052
19 7 2.6841 9.1261 5.7801
20 6 2.1232 10.3757 5.8409
21 1 1.7169 10.8292 4.9488
22 6 2.0776 11.0587 7.0500
23 7 2.5715 10.5068 8.1355
24 14 1.3128 12.7610 7.1330
25 1 0.8328 13.1543 5.7837
26 1 0.1693 12.7444 8.0803
27 1 2.3289 13.7378 7.6006
28 6 4.2469 4.9269 1.5983
29 1 5.3159 5.0802 1.4507
30 6 3.4533 5.8243 0.6466
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 1.6464 1.9670 0.8708
37 1 1.7075 1.9455 -0.9080
38 1 4.7872 -0.8792 -1.9935
39 1 3.6993 -1.0802 -0.5990
40 1 5.3739 -0.5309 -0.3495
41 1 2.5626 2.2393 2.3779
42 1 4.1557 2.4465 3.1657
43 1 1.8261 4.4399 3.0328
44 1 2.7934 3.9466 4.4626
45 1 2.3200 6.5882 2.8269
46 1 2.8021 6.4157 5.2028
47 1 4.3878 7.1445 4.8526
48 1 3.0486 8.7188 6.5813
49 1 2.5393 10.9834 8.9798
50 1 2.3863 5.6597 0.7970
51 1 3.6917 6.8686 0.8486
52 1 3.7164 5.5842 -0.3834
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001179308266.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:38
Heat of formation + Delta-G solvation = -114.818600 kcal
Electronic energy + Delta-G solvation = -30608.977320 eV
Core-core repulsion = 26415.610242 eV
Total energy + Delta-G solvation = -4193.367078 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.76184 -39.04845 -38.16881 -37.36526 -35.15555 -34.62954 -33.81448 -31.62724
-31.23162 -30.95334 -29.68072 -27.01565 -26.73531 -25.30038 -24.83808 -23.73186
-22.92953 -21.70171 -20.54665 -19.36642 -19.07810 -17.98249 -17.73403 -17.16637
-16.30008 -16.08678 -15.74671 -15.72112 -15.43303 -15.12865 -14.62717 -14.53884
-14.20852 -13.93538 -13.74158 -13.72448 -13.58974 -13.45361 -13.00905 -12.83977
-12.65205 -12.52844 -12.35720 -12.25665 -12.21230 -11.89159 -11.66718 -11.56948
-11.52480 -11.48089 -11.44516 -11.07673 -11.04693 -10.84392 -10.79189 -10.35742
-10.31868 -10.24475 -9.54191 -9.53849 -8.81600 -8.50394 -8.10264 -7.98333
-6.44088 -3.84799 2.41313 2.49330 3.14955 3.25894 3.33176 3.52744
3.87730 3.99132 4.09258 4.20623 4.35590 4.37281 4.40995 4.53501
4.66940 4.72085 4.82669 4.94382 4.95786 5.00150 5.09504 5.09834
5.12163 5.16047 5.23807 5.26271 5.27999 5.39075 5.46165 5.48821
5.56656 5.61477 5.70105 5.74647 5.74865 5.81808 5.83844 5.87317
5.94806 6.12950 6.23559 6.37586 6.56947 6.69306 7.13051 7.33126
7.53521 7.55993 8.02778 8.04282 8.58591 9.15867 9.51789 10.02948
10.73635
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.023425 B = 0.001924 C = 0.001877
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1195.024429 B =14546.289537 C =14912.366732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.125 4.125
3 C -0.135 4.135
4 C 0.078 3.922
5 H 0.083 0.917
6 O -0.357 6.357
7 C 0.023 3.977
8 C 0.526 3.474
9 O -0.515 6.515
10 N -0.615 5.615
11 C 0.095 3.905
12 C -0.167 4.167
13 C 0.083 3.917
14 H 0.095 0.905
15 N -0.653 5.653
16 C 0.050 3.950
17 C 0.440 3.560
18 O -0.582 6.582
19 N -0.564 5.564
20 C -0.298 4.298
21 H 0.104 0.896
22 C 0.022 3.978
23 N -0.902 5.902
24 Si 0.929 3.071
25 H -0.268 1.268
26 H -0.282 1.282
27 H -0.281 1.281
28 C 0.146 3.854
29 H 0.079 0.921
30 C -0.153 4.153
31 H 0.055 0.945
32 H 0.056 0.944
33 H 0.056 0.944
34 H 0.069 0.931
35 H 0.061 0.939
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.090 0.910
39 H 0.048 0.952
40 H 0.042 0.958
41 H 0.077 0.923
42 H 0.071 0.929
43 H 0.080 0.920
44 H 0.086 0.914
45 H 0.354 0.646
46 H 0.045 0.955
47 H 0.087 0.913
48 H 0.392 0.608
49 H 0.271 0.729
50 H 0.049 0.951
51 H 0.088 0.912
52 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.805 -25.762 -9.215 27.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.162 4.162
3 C -0.173 4.173
4 C 0.017 3.983
5 H 0.101 0.899
6 O -0.274 6.274
7 C -0.073 4.073
8 C 0.313 3.687
9 O -0.389 6.389
10 N -0.352 5.352
11 C -0.028 4.028
12 C -0.207 4.207
13 C -0.029 4.029
14 H 0.113 0.887
15 N -0.285 5.285
16 C -0.082 4.082
17 C 0.226 3.774
18 O -0.466 6.466
19 N -0.200 5.200
20 C -0.428 4.428
21 H 0.122 0.878
22 C -0.180 4.180
23 N -0.543 5.543
24 Si 0.756 3.244
25 H -0.192 1.192
26 H -0.208 1.208
27 H -0.207 1.207
28 C 0.043 3.957
29 H 0.097 0.903
30 C -0.211 4.211
31 H 0.074 0.926
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.087 0.913
35 H 0.080 0.920
36 H 0.099 0.901
37 H 0.099 0.901
38 H 0.108 0.892
39 H 0.066 0.934
40 H 0.060 0.940
41 H 0.096 0.904
42 H 0.089 0.911
43 H 0.099 0.901
44 H 0.105 0.895
45 H 0.175 0.825
46 H 0.063 0.937
47 H 0.105 0.895
48 H 0.225 0.775
49 H 0.081 0.919
50 H 0.068 0.932
51 H 0.107 0.893
52 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 1.396 -24.628 -10.681 26.880
hybrid contribution -0.791 -0.236 1.539 1.746
sum 0.605 -24.863 -9.142 26.498
Atomic orbital electron populations
1.21760 0.95208 1.01806 1.02208 1.21602 0.96540 0.95943 1.02140
1.22091 0.92649 0.98447 1.04115 1.21958 0.94674 0.92339 0.89367
0.89912 1.88053 1.82042 1.26585 1.30728 1.23014 0.98471 0.82761
1.03056 1.20144 0.79433 0.87673 0.81436 1.90725 1.41441 1.68535
1.38180 1.48590 1.64085 1.12267 1.10273 1.22397 0.98308 0.96743
0.85355 1.23591 1.00180 0.96055 1.00885 1.22616 0.97396 0.87672
0.95184 0.88731 1.60054 1.26736 1.20699 1.21022 1.21705 1.01583
0.95596 0.89313 1.19786 0.85585 0.87537 0.84539 1.90534 1.51744
1.69456 1.34890 1.41866 1.52986 1.16583 1.08596 1.19755 1.34658
0.92152 0.96228 0.87846 1.25264 0.97698 1.00164 0.94864 1.69617
1.45988 1.38902 0.99810 0.85802 0.78532 0.81504 0.78524 1.19197
1.20788 1.20736 1.21509 0.99815 0.79492 0.94921 0.90320 1.21947
0.99193 1.01157 0.98810 0.92572 0.92531 0.92471 0.91279 0.92040
0.90107 0.90136 0.89175 0.93359 0.93954 0.90434 0.91053 0.90128
0.89533 0.82459 0.93717 0.89486 0.77481 0.91926 0.93200 0.89300
0.92291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.85 9.91 37.15 0.37 -0.48 16
2 C -0.12 -0.73 4.90 -26.73 -0.13 -0.86 16
3 C -0.14 -1.04 4.69 -26.73 -0.13 -1.17 16
4 C 0.08 0.72 1.96 -27.88 -0.05 0.67 16
5 H 0.08 0.56 7.45 -51.93 -0.39 0.18 16
6 O -0.36 -3.88 9.68 -54.87 -0.53 -4.41 16
7 C 0.02 0.16 10.34 101.05 1.05 1.20 16
8 C 0.53 6.64 6.89 -10.99 -0.08 6.56 16
9 O -0.51 -8.79 15.63 -14.08 -0.22 -9.01 16
10 N -0.62 -6.60 3.08 -163.01 -0.50 -7.10 16
11 C 0.10 0.71 6.42 -2.53 -0.02 0.69 16
12 C -0.17 -1.42 6.63 -24.58 -0.16 -1.58 16
13 C 0.08 0.92 3.10 -65.87 -0.20 0.72 16
14 H 0.09 0.97 7.89 -51.93 -0.41 0.56 16
15 N -0.65 -9.60 4.51 -106.05 -0.48 -10.07 16
16 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16
17 C 0.44 10.00 7.82 -10.99 -0.09 9.91 16
18 O -0.58 -15.40 15.78 5.55 0.09 -15.31 16
19 N -0.56 -13.91 5.29 -10.97 -0.06 -13.96 16
20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16
21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16
22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16
23 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16
24 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16
25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
28 C 0.15 1.78 3.46 -66.95 -0.23 1.55 16
29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
30 C -0.15 -2.12 8.20 37.16 0.30 -1.82 16
31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.07 0.42 6.47 -51.93 -0.34 0.09 16
35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
36 H 0.08 0.56 6.00 -51.93 -0.31 0.25 16
37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.05 0.23 5.98 -51.93 -0.31 -0.08 16
40 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
41 H 0.08 0.44 5.56 -51.93 -0.29 0.16 16
42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
43 H 0.08 0.73 7.81 -51.93 -0.41 0.33 16
44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.35 5.48 7.24 -39.29 -0.28 5.20 16
46 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16
47 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16
48 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16
49 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16
50 H 0.05 0.67 7.84 -51.93 -0.41 0.26 16
51 H 0.09 1.37 7.45 -51.93 -0.39 0.98 16
52 H 0.06 0.90 6.91 -51.93 -0.36 0.54 16
LS Contribution 411.04 15.07 6.19 6.19
Total: -1.00 -33.85 411.04 -8.24 -42.09
By element:
Atomic # 1 Polarization: 19.68 SS G_CDS: -8.79 Total: 10.89 kcal
Atomic # 6 Polarization: 7.95 SS G_CDS: 0.36 Total: 8.31 kcal
Atomic # 7 Polarization: -54.28 SS G_CDS: -0.31 Total: -54.60 kcal
Atomic # 8 Polarization: -28.07 SS G_CDS: -0.66 Total: -28.74 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -33.85 -8.24 -42.09 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179308266.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.728 kcal
(2) G-P(sol) polarization free energy of solvation -33.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds