Wall clock time and date at job start Sat Apr 11 2020 06:25:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53002 * 109.47173 * 2 1
4 4 C 1.53004 * 109.46988 * 177.91849 * 3 2 1
5 5 H 1.08994 * 109.46802 * 305.64726 * 4 3 2
6 6 O 1.42893 * 109.47112 * 65.65417 * 4 3 2
7 7 C 1.42910 * 113.99689 * 258.97010 * 6 4 3
8 8 C 1.50697 * 109.46696 * 185.65119 * 4 3 2
9 9 O 1.21284 * 119.99972 * 251.71653 * 8 4 3
10 10 N 1.34779 * 120.00439 * 71.72227 * 8 4 3
11 11 C 1.47419 * 125.64426 * 5.32524 * 10 8 4
12 12 C 1.54914 * 104.83052 * 204.09507 * 11 10 8
13 13 C 1.55160 * 101.57969 * 322.98885 * 12 11 10
14 14 H 1.08995 * 110.71985 * 276.96151 * 13 12 11
15 15 N 1.46898 * 110.72035 * 153.86804 * 13 12 11
16 16 C 1.46902 * 111.00338 * 86.44915 * 15 13 12
17 17 C 1.50696 * 109.47120 * 179.97438 * 16 15 13
18 18 O 1.21287 * 120.00342 * 0.02562 * 17 16 15
19 19 N 1.34776 * 119.99551 * 180.02562 * 17 16 15
20 20 C 1.37102 * 119.99713 * 180.02562 * 19 17 16
21 21 H 1.08000 * 119.99949 * 0.02562 * 20 19 17
22 22 C 1.38948 * 120.00035 * 180.02562 * 20 19 17
23 23 N 1.31409 * 119.99972 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 120.00261 * 180.02562 * 22 20 19
25 25 H 1.48508 * 109.47019 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47530 * 119.99978 * 24 22 20
27 27 H 1.48508 * 109.46937 * 240.00023 * 24 22 20
28 28 C 1.47022 * 125.64868 * 185.01956 * 10 8 4
29 29 H 1.09000 * 109.88175 * 298.39042 * 28 10 8
30 30 C 1.53003 * 109.88297 * 59.55748 * 28 10 8
31 31 H 1.09000 * 109.47160 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46982 * 299.99492 * 1 2 3
33 33 H 1.08996 * 109.47213 * 59.99581 * 1 2 3
34 34 H 1.09001 * 109.46982 * 240.00508 * 2 1 3
35 35 H 1.08996 * 109.47213 * 120.00419 * 2 1 3
36 36 H 1.09006 * 109.46795 * 57.91964 * 3 2 1
37 37 H 1.08994 * 109.47418 * 297.91972 * 3 2 1
38 38 H 1.09002 * 109.46897 * 173.72807 * 7 6 4
39 39 H 1.09002 * 109.46789 * 53.72958 * 7 6 4
40 40 H 1.08994 * 109.47006 * 293.72762 * 7 6 4
41 41 H 1.09001 * 110.37005 * 322.92558 * 11 10 8
42 42 H 1.08991 * 110.37046 * 85.14446 * 11 10 8
43 43 H 1.09001 * 111.00674 * 81.06332 * 12 11 10
44 44 H 1.08998 * 111.00163 * 204.88091 * 12 11 10
45 45 H 1.00908 * 110.99803 * 322.49767 * 15 13 12
46 46 H 1.08999 * 109.47301 * 300.00850 * 16 15 13
47 47 H 1.09005 * 109.46180 * 60.00355 * 16 15 13
48 48 H 0.96995 * 120.00587 * 0.02562 * 19 17 16
49 49 H 0.97008 * 120.00501 * 180.02562 * 23 22 20
50 50 H 1.08998 * 109.46976 * 58.54980 * 30 28 10
51 51 H 1.09004 * 109.46739 * 178.54421 * 30 28 10
52 52 H 1.08993 * 109.46840 * 298.54479 * 30 28 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5691 1.4428 0.0524
5 1 3.9034 0.8541 0.9066
6 8 4.0870 0.8727 -1.1512
7 6 4.5121 -0.4850 -1.0152
8 6 4.0666 2.8584 0.1923
9 8 4.6116 3.4049 -0.7433
10 7 3.9060 3.5172 1.3571
11 6 3.3652 2.9419 2.6020
12 6 2.8146 4.1548 3.3929
13 6 3.8647 5.2471 3.0588
14 1 4.7331 5.1598 3.7118
15 7 3.2717 6.5871 3.1623
16 6 3.3447 7.0902 4.5405
17 6 2.7288 8.4639 4.6071
18 8 2.2733 8.9736 3.6052
19 7 2.6841 9.1261 5.7801
20 6 2.1232 10.3757 5.8409
21 1 1.7169 10.8292 4.9488
22 6 2.0776 11.0587 7.0500
23 7 2.5715 10.5068 8.1355
24 14 1.3128 12.7610 7.1330
25 1 0.8328 13.1543 5.7837
26 1 0.1693 12.7444 8.0803
27 1 2.3289 13.7378 7.6006
28 6 4.2469 4.9269 1.5983
29 1 5.3159 5.0802 1.4507
30 6 3.4533 5.8243 0.6466
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5139 -0.8899
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 1.6464 1.9670 0.8708
37 1 1.7075 1.9455 -0.9080
38 1 4.7872 -0.8792 -1.9935
39 1 3.6993 -1.0802 -0.5990
40 1 5.3739 -0.5309 -0.3495
41 1 2.5626 2.2393 2.3779
42 1 4.1557 2.4465 3.1657
43 1 1.8261 4.4399 3.0328
44 1 2.7934 3.9466 4.4626
45 1 2.3200 6.5882 2.8269
46 1 2.8021 6.4157 5.2028
47 1 4.3878 7.1445 4.8526
48 1 3.0486 8.7188 6.5813
49 1 2.5393 10.9834 8.9798
50 1 2.3863 5.6597 0.7970
51 1 3.6917 6.8686 0.8486
52 1 3.7164 5.5842 -0.3834
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001179308266.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:37
Heat of formation + Delta-G solvation = -138.869736 kcal
Electronic energy + Delta-G solvation = -30610.020255 eV
Core-core repulsion = 26415.610242 eV
Total energy + Delta-G solvation = -4194.410013 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.64366 -40.23041 -39.54142 -38.35493 -36.22282 -35.73379 -35.30210 -33.26207
-32.51900 -31.83549 -30.46024 -28.18519 -27.52961 -26.51498 -25.84114 -25.03494
-23.65118 -22.20444 -21.41528 -21.11497 -20.00703 -19.91531 -18.59418 -18.00837
-17.60963 -17.03956 -16.82381 -16.60617 -16.50662 -16.30559 -15.94075 -15.71318
-15.44823 -15.16026 -14.96624 -14.48618 -14.30371 -14.19525 -14.17109 -14.01030
-13.66747 -13.50034 -13.41982 -13.24667 -13.10120 -13.07813 -12.94725 -12.70960
-12.48243 -12.46485 -12.38725 -12.24108 -12.11672 -11.97402 -11.83875 -11.69981
-11.50028 -11.47608 -11.04626 -10.39703 -10.30115 -9.99079 -9.72075 -9.25340
-8.45647 -5.93556 1.36974 1.42610 1.49558 1.56131 1.67003 2.08570
2.30110 2.85926 2.95519 3.22213 3.34202 3.45368 3.63244 3.73060
3.79215 3.87359 4.06853 4.13178 4.16210 4.21396 4.32334 4.35521
4.45682 4.47928 4.50850 4.53805 4.57801 4.63726 4.64532 4.70434
4.73664 4.75972 4.82786 4.93868 4.99065 5.00653 5.08662 5.10676
5.23400 5.29589 5.36356 5.36971 5.42937 5.43482 5.91454 6.07400
6.12850 6.38393 6.48403 6.62566 7.10871 7.15139 7.59451 8.15253
8.71792
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.023425 B = 0.001924 C = 0.001877
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1195.024429 B =14546.289537 C =14912.366732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.119 4.119
3 C -0.130 4.130
4 C 0.084 3.916
5 H 0.116 0.884
6 O -0.392 6.392
7 C 0.017 3.983
8 C 0.517 3.483
9 O -0.573 6.573
10 N -0.610 5.610
11 C 0.094 3.906
12 C -0.159 4.159
13 C 0.088 3.912
14 H 0.112 0.888
15 N -0.671 5.671
16 C 0.068 3.932
17 C 0.437 3.563
18 O -0.625 6.625
19 N -0.573 5.573
20 C -0.331 4.331
21 H 0.077 0.923
22 C -0.013 4.013
23 N -0.919 5.919
24 Si 0.990 3.010
25 H -0.275 1.275
26 H -0.270 1.270
27 H -0.272 1.272
28 C 0.145 3.855
29 H 0.064 0.936
30 C -0.141 4.141
31 H 0.065 0.935
32 H 0.059 0.941
33 H 0.044 0.956
34 H 0.065 0.935
35 H 0.084 0.916
36 H 0.091 0.909
37 H 0.053 0.947
38 H 0.094 0.906
39 H 0.070 0.930
40 H 0.050 0.950
41 H 0.102 0.898
42 H 0.098 0.902
43 H 0.074 0.926
44 H 0.111 0.889
45 H 0.348 0.652
46 H 0.077 0.923
47 H 0.106 0.894
48 H 0.397 0.603
49 H 0.277 0.723
50 H 0.051 0.949
51 H 0.068 0.932
52 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.501 -28.345 -7.017 29.205
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.157 4.157
3 C -0.168 4.168
4 C 0.023 3.977
5 H 0.134 0.866
6 O -0.310 6.310
7 C -0.079 4.079
8 C 0.306 3.694
9 O -0.452 6.452
10 N -0.346 5.346
11 C -0.028 4.028
12 C -0.199 4.199
13 C -0.023 4.023
14 H 0.130 0.870
15 N -0.303 5.303
16 C -0.064 4.064
17 C 0.225 3.775
18 O -0.512 6.512
19 N -0.211 5.211
20 C -0.461 4.461
21 H 0.095 0.905
22 C -0.212 4.212
23 N -0.560 5.560
24 Si 0.814 3.186
25 H -0.200 1.200
26 H -0.195 1.195
27 H -0.198 1.198
28 C 0.041 3.959
29 H 0.082 0.918
30 C -0.200 4.200
31 H 0.084 0.916
32 H 0.079 0.921
33 H 0.064 0.936
34 H 0.084 0.916
35 H 0.102 0.898
36 H 0.110 0.890
37 H 0.072 0.928
38 H 0.113 0.887
39 H 0.089 0.911
40 H 0.068 0.932
41 H 0.120 0.880
42 H 0.116 0.884
43 H 0.092 0.908
44 H 0.129 0.871
45 H 0.168 0.832
46 H 0.095 0.905
47 H 0.124 0.876
48 H 0.231 0.769
49 H 0.087 0.913
50 H 0.070 0.930
51 H 0.087 0.913
52 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 1.096 -27.261 -8.430 28.555
hybrid contribution -0.674 0.545 0.786 1.170
sum 0.422 -26.716 -7.644 27.791
Atomic orbital electron populations
1.21768 0.95111 1.02345 1.01849 1.21581 0.96532 0.94493 1.03065
1.22063 0.91586 0.99823 1.03293 1.22034 0.95252 0.90268 0.90151
0.86627 1.88019 1.82401 1.28710 1.31915 1.23224 0.99558 0.81173
1.03902 1.20953 0.78518 0.89004 0.80965 1.90693 1.44215 1.70076
1.40217 1.48622 1.63275 1.11536 1.11127 1.22697 0.99828 0.96674
0.83596 1.23555 0.98770 0.95015 1.02512 1.22609 0.98709 0.86690
0.94296 0.87034 1.59966 1.26580 1.23439 1.20297 1.21544 1.02246
0.91753 0.90840 1.20974 0.83989 0.89460 0.83118 1.90508 1.53253
1.71156 1.36236 1.41922 1.53481 1.16163 1.09533 1.19667 1.36549
0.93986 0.95910 0.90540 1.25984 0.97715 1.03315 0.94230 1.69665
1.46118 1.40084 1.00137 0.84913 0.78132 0.77396 0.78151 1.20011
1.19529 1.19762 1.21390 0.98626 0.80436 0.95467 0.91801 1.21778
0.99579 1.00468 0.98132 0.91578 0.92146 0.93647 0.91645 0.89754
0.89048 0.92782 0.88708 0.91126 0.93183 0.88008 0.88402 0.90765
0.87079 0.83208 0.90523 0.87590 0.76861 0.91344 0.92964 0.91282
0.94499
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16
2 C -0.12 -1.06 4.90 30.59 0.15 -0.91 16
3 C -0.13 -1.78 4.69 30.60 0.14 -1.64 16
4 C 0.08 1.42 1.96 29.85 0.06 1.47 16
5 H 0.12 1.14 7.45 -2.39 -0.02 1.12 16
6 O -0.39 -8.26 9.68 -130.21 -1.26 -9.52 16
7 C 0.02 0.19 10.34 113.37 1.17 1.37 16
8 C 0.52 12.89 6.89 87.66 0.60 13.50 16
9 O -0.57 -20.57 15.63 15.73 0.25 -20.33 16
10 N -0.61 -12.24 3.08 -788.04 -2.43 -14.66 16
11 C 0.09 1.01 6.42 86.86 0.56 1.57 16
12 C -0.16 -2.10 6.63 31.99 0.21 -1.89 16
13 C 0.09 1.75 3.10 46.11 0.14 1.89 16
14 H 0.11 1.90 7.89 -2.39 -0.02 1.88 16
15 N -0.67 -19.02 4.51 -489.43 -2.21 -21.22 16
16 C 0.07 2.07 6.02 85.56 0.52 2.59 16
17 C 0.44 19.89 7.82 87.66 0.69 20.58 16
18 O -0.63 -33.96 15.78 -3.05 -0.05 -34.01 16
19 N -0.57 -28.47 5.29 -306.99 -1.62 -30.10 16
20 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16
21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16
22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
23 N -0.92 -48.65 13.05 21.66 0.28 -48.36 16
24 Si 0.99 42.67 29.55 68.60 2.03 44.69 16
25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16
28 C 0.14 3.50 3.46 45.35 0.16 3.65 16
29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
30 C -0.14 -4.13 8.20 71.98 0.59 -3.54 16
31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
34 H 0.06 0.65 6.47 -2.39 -0.02 0.64 16
35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
36 H 0.09 1.02 6.00 -2.38 -0.01 1.01 16
37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
39 H 0.07 0.47 5.98 -2.39 -0.01 0.45 16
40 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16
41 H 0.10 0.67 5.56 -2.39 -0.01 0.66 16
42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16
43 H 0.07 1.13 7.81 -2.39 -0.02 1.11 16
44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
45 H 0.35 10.63 7.24 -89.69 -0.65 9.98 16
46 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16
47 H 0.11 2.88 8.09 -2.38 -0.02 2.86 16
48 H 0.40 18.52 7.90 -92.71 -0.73 17.78 16
49 H 0.28 13.71 8.31 -92.70 -0.77 12.94 16
50 H 0.05 1.45 7.84 -2.39 -0.02 1.43 16
51 H 0.07 2.27 7.45 -2.38 -0.02 2.25 16
52 H 0.04 1.22 6.91 -2.39 -0.02 1.20 16
Total: -1.00 -78.04 411.04 1.52 -76.51
By element:
Atomic # 1 Polarization: 37.45 SS G_CDS: -0.45 Total: 37.00 kcal
Atomic # 6 Polarization: 13.02 SS G_CDS: 6.98 Total: 20.00 kcal
Atomic # 7 Polarization: -108.37 SS G_CDS: -5.97 Total: -114.35 kcal
Atomic # 8 Polarization: -62.80 SS G_CDS: -1.06 Total: -63.86 kcal
Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal
Total: -78.04 1.52 -76.51 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001179308266.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.357 kcal
(2) G-P(sol) polarization free energy of solvation -78.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds