Wall clock time and date at job start Sat Apr 11 2020 06:25:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.46710 * 2 1
4 4 C 1.53001 * 109.47143 * 175.28489 * 3 2 1
5 5 H 1.09006 * 109.47098 * 305.39766 * 4 3 2
6 6 O 1.42908 * 109.46823 * 65.39132 * 4 3 2
7 7 C 1.42897 * 113.99749 * 253.69499 * 6 4 3
8 8 C 1.53001 * 109.46622 * 185.00018 * 7 6 4
9 9 C 1.50695 * 109.47123 * 185.39400 * 4 3 2
10 10 O 1.21283 * 119.99813 * 253.30040 * 9 4 3
11 11 N 1.34770 * 120.00428 * 73.30452 * 9 4 3
12 12 C 1.47025 * 125.64544 * 355.02840 * 11 9 4
13 13 C 1.54323 * 107.27071 * 181.03561 * 12 11 9
14 14 C 1.55164 * 102.94225 * 22.19318 * 13 12 11
15 15 H 1.09003 * 111.00137 * 82.57105 * 14 13 12
16 16 N 1.46897 * 111.00463 * 206.38620 * 14 13 12
17 17 C 1.46907 * 110.99668 * 273.54465 * 16 14 13
18 18 C 1.50700 * 109.46695 * 179.97438 * 17 16 14
19 19 O 1.21287 * 120.00267 * 0.02562 * 18 17 16
20 20 N 1.34784 * 119.99971 * 179.97438 * 18 17 16
21 21 C 1.37092 * 120.00306 * 179.97438 * 20 18 17
22 22 H 1.08004 * 120.00006 * 0.02562 * 21 20 18
23 23 C 1.38954 * 120.00138 * 180.02562 * 21 20 18
24 24 N 1.31402 * 119.99699 * 359.97438 * 23 21 20
25 25 Si 1.86795 * 119.99875 * 180.02562 * 23 21 20
26 26 H 1.48505 * 109.47428 * 359.97438 * 25 23 21
27 27 H 1.48507 * 109.47181 * 119.99970 * 25 23 21
28 28 H 1.48499 * 109.47155 * 239.99617 * 25 23 21
29 29 C 1.47424 * 125.65086 * 174.99984 * 11 9 4
30 30 H 1.08998 * 109.47250 * 299.99400 * 1 2 3
31 31 H 1.09004 * 109.46972 * 59.99916 * 1 2 3
32 32 H 1.09006 * 109.46433 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47250 * 240.00600 * 2 1 3
34 34 H 1.08995 * 109.47219 * 120.00031 * 2 1 3
35 35 H 1.08999 * 109.46805 * 55.29279 * 3 2 1
36 36 H 1.08990 * 109.47160 * 295.28633 * 3 2 1
37 37 H 1.08999 * 109.47355 * 304.99449 * 7 6 4
38 38 H 1.08994 * 109.47446 * 65.00074 * 7 6 4
39 39 H 1.09000 * 109.47222 * 60.00290 * 8 7 6
40 40 H 1.09010 * 109.47002 * 179.97438 * 8 7 6
41 41 H 1.08996 * 109.47466 * 299.99514 * 8 7 6
42 42 H 1.08994 * 109.88384 * 61.62001 * 12 11 9
43 43 H 1.09001 * 109.88345 * 300.45129 * 12 11 9
44 44 H 1.09006 * 110.72188 * 140.54832 * 13 12 11
45 45 H 1.08994 * 110.72695 * 263.83153 * 13 12 11
46 46 H 1.00896 * 111.00489 * 149.59312 * 16 14 13
47 47 H 1.08995 * 109.47070 * 300.00074 * 17 16 14
48 48 H 1.08996 * 109.47084 * 60.00373 * 17 16 14
49 49 H 0.97002 * 119.99482 * 0.02562 * 20 18 17
50 50 H 0.97002 * 119.99954 * 180.02562 * 24 23 21
51 51 H 1.08996 * 110.36632 * 37.05499 * 29 11 9
52 52 H 1.09003 * 110.46153 * 274.78035 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5653 1.4444 0.1186
5 1 3.8621 0.8726 0.9980
6 8 4.1346 0.8505 -1.0500
7 6 4.6604 -0.4612 -0.8379
8 6 5.3510 -0.9461 -2.1142
9 6 4.0572 2.8625 0.2519
10 8 4.6171 3.4002 -0.6800
11 7 3.8749 3.5334 1.4064
12 6 3.1263 3.0433 2.5731
13 6 3.1635 4.1561 3.6417
14 6 3.4486 5.4316 2.8055
15 1 2.5310 5.8254 2.3685
16 7 4.1229 6.4536 3.6172
17 6 3.1469 7.2794 4.3408
18 6 3.8741 8.3135 5.1610
19 8 5.0860 8.3586 5.1441
20 7 3.1777 9.1891 5.9127
21 6 3.8391 10.1296 6.6593
22 1 4.9184 10.1692 6.6448
23 6 3.1212 11.0319 7.4346
24 7 1.8081 10.9841 7.4517
25 14 4.0225 12.3138 8.4513
26 1 5.4868 12.1580 8.2591
27 1 3.6074 13.6718 8.0166
28 1 3.6899 12.1304 9.8868
29 6 4.3936 4.8798 1.7090
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3632 -1.0278 -0.0005
33 1 1.8933 -0.5137 -0.8900
34 1 1.8933 -0.5138 0.8899
35 1 1.6093 1.9801 0.8448
36 1 1.7472 1.9314 -0.9291
37 1 5.3822 -0.4357 -0.0216
38 1 3.8479 -1.1417 -0.5835
39 1 6.1636 -0.2656 -2.3687
40 1 5.7526 -1.9465 -1.9524
41 1 4.6293 -0.9717 -2.9306
42 1 3.5959 2.1400 2.9622
43 1 2.0944 2.8350 2.2907
44 1 2.2024 4.2351 4.1499
45 1 3.9658 3.9769 4.3574
46 1 4.7291 7.0253 3.0483
47 1 2.4913 7.7770 3.6263
48 1 2.5525 6.6461 4.9994
49 1 2.2084 9.1533 5.9259
50 1 1.3068 11.6142 7.9927
51 1 4.3531 5.5103 0.8208
52 1 5.4153 4.8191 2.0840
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185030825.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:58
Heat of formation + Delta-G solvation = -122.682583 kcal
Electronic energy + Delta-G solvation = -29851.537932 eV
Core-core repulsion = 25657.829846 eV
Total energy + Delta-G solvation = -4193.708086 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.62133 -38.89615 -38.19749 -37.36833 -35.28448 -34.69237 -33.81115 -32.00848
-31.28400 -30.83751 -29.78514 -28.67279 -26.27495 -25.11402 -23.85854 -23.42965
-22.95372 -21.61749 -20.67853 -19.75380 -19.22545 -17.91568 -17.67387 -17.23212
-16.63138 -16.33152 -15.87624 -15.70128 -15.33065 -15.14984 -14.80741 -14.54851
-14.34887 -13.97283 -13.79113 -13.64392 -13.54136 -13.35989 -13.20501 -13.02956
-12.73320 -12.53459 -12.40709 -12.38575 -12.31586 -11.78672 -11.73138 -11.62857
-11.57744 -11.47032 -11.46265 -11.22991 -11.09467 -11.04523 -10.82765 -10.35734
-10.35684 -10.24563 -9.59631 -9.54421 -8.87334 -8.52344 -8.18493 -7.98937
-6.44175 -3.84932 2.35688 2.42004 3.14996 3.25916 3.33147 3.40199
3.87500 4.02240 4.02811 4.25024 4.35323 4.37673 4.47649 4.49977
4.58500 4.65486 4.72016 4.83737 4.90495 4.95917 5.01771 5.07217
5.08919 5.17375 5.20322 5.24780 5.29838 5.33702 5.38690 5.45932
5.52899 5.60449 5.67690 5.69012 5.72545 5.76147 5.79338 5.80169
5.86482 5.90463 5.96990 6.04738 6.24364 6.71677 7.10302 7.25000
7.53159 7.53533 7.93946 8.03898 8.58369 9.15621 9.51435 10.02584
10.73568
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.024965 B = 0.001720 C = 0.001643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1121.290246 B =16278.976100 C =17038.242367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.123 4.123
3 C -0.134 4.134
4 C 0.081 3.919
5 H 0.086 0.914
6 O -0.355 6.355
7 C 0.052 3.948
8 C -0.151 4.151
9 C 0.523 3.477
10 O -0.519 6.519
11 N -0.616 5.616
12 C 0.096 3.904
13 C -0.123 4.123
14 C 0.073 3.927
15 H 0.059 0.941
16 N -0.656 5.656
17 C 0.052 3.948
18 C 0.440 3.560
19 O -0.582 6.582
20 N -0.563 5.563
21 C -0.299 4.299
22 H 0.104 0.896
23 C 0.022 3.978
24 N -0.901 5.901
25 Si 0.930 3.070
26 H -0.268 1.268
27 H -0.282 1.282
28 H -0.281 1.281
29 C 0.108 3.892
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.055 0.945
33 H 0.068 0.932
34 H 0.061 0.939
35 H 0.081 0.919
36 H 0.079 0.921
37 H 0.049 0.951
38 H 0.053 0.947
39 H 0.065 0.935
40 H 0.071 0.929
41 H 0.064 0.936
42 H 0.070 0.930
43 H 0.072 0.928
44 H 0.082 0.918
45 H 0.092 0.908
46 H 0.354 0.646
47 H 0.045 0.955
48 H 0.087 0.913
49 H 0.392 0.608
50 H 0.271 0.729
51 H 0.079 0.921
52 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.983 -25.356 -13.627 29.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.160 4.160
3 C -0.172 4.172
4 C 0.020 3.980
5 H 0.103 0.897
6 O -0.273 6.273
7 C -0.025 4.025
8 C -0.208 4.208
9 C 0.310 3.690
10 O -0.393 6.393
11 N -0.353 5.353
12 C -0.027 4.027
13 C -0.162 4.162
14 C -0.039 4.039
15 H 0.077 0.923
16 N -0.289 5.289
17 C -0.081 4.081
18 C 0.225 3.775
19 O -0.467 6.467
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.122 0.878
23 C -0.179 4.179
24 N -0.543 5.543
25 Si 0.757 3.243
26 H -0.192 1.192
27 H -0.208 1.208
28 H -0.207 1.207
29 C -0.015 4.015
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.087 0.913
34 H 0.080 0.920
35 H 0.100 0.900
36 H 0.098 0.902
37 H 0.067 0.933
38 H 0.071 0.929
39 H 0.084 0.916
40 H 0.090 0.910
41 H 0.083 0.917
42 H 0.088 0.912
43 H 0.090 0.910
44 H 0.100 0.900
45 H 0.110 0.890
46 H 0.174 0.826
47 H 0.063 0.937
48 H 0.105 0.895
49 H 0.225 0.775
50 H 0.081 0.919
51 H 0.097 0.903
52 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -2.845 -25.286 -13.789 28.942
hybrid contribution -0.708 1.067 0.244 1.303
sum -3.553 -24.220 -13.545 27.976
Atomic orbital electron populations
1.21762 0.95259 1.01823 1.02117 1.21552 0.96413 0.95859 1.02222
1.22072 0.92470 0.98591 1.04063 1.21915 0.94327 0.91585 0.90195
0.89655 1.88050 1.77713 1.30364 1.31149 1.22705 0.96974 0.83966
0.98822 1.21735 1.01124 1.00938 0.97044 1.20339 0.79671 0.87891
0.81080 1.90732 1.42014 1.68995 1.37606 1.48351 1.54280 1.18268
1.14390 1.22250 0.96239 0.98253 0.85961 1.22728 1.03706 0.92675
0.97043 1.22665 0.95866 0.93142 0.92184 0.92281 1.60078 1.20171
1.17583 1.31095 1.21711 0.93971 0.95015 0.97387 1.19772 0.88256
0.84565 0.84858 1.90532 1.13761 1.74079 1.68287 1.41865 1.09193
1.28775 1.40147 1.19762 0.93657 1.08335 1.21137 0.87829 1.25264
0.95552 0.98885 0.98239 1.69615 1.05370 1.38067 1.41219 0.85797
0.79662 0.79807 0.79061 1.19200 1.20762 1.20740 1.22305 0.98263
0.82871 0.98059 0.92527 0.92546 0.92568 0.91342 0.92017 0.90042
0.90241 0.93301 0.92900 0.91618 0.91015 0.91727 0.91192 0.91032
0.89953 0.88984 0.82576 0.93664 0.89483 0.77465 0.91911 0.90272
0.89991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16
2 C -0.12 -0.70 5.07 -26.73 -0.14 -0.83 16
3 C -0.13 -0.98 4.83 -26.73 -0.13 -1.11 16
4 C 0.08 0.75 2.05 -27.88 -0.06 0.69 16
5 H 0.09 0.60 7.32 -51.93 -0.38 0.22 16
6 O -0.35 -3.82 9.26 -54.78 -0.51 -4.32 16
7 C 0.05 0.38 6.13 37.16 0.23 0.61 16
8 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16
9 C 0.52 6.56 7.16 -10.99 -0.08 6.48 16
10 O -0.52 -8.84 16.78 -13.99 -0.23 -9.08 16
11 N -0.62 -6.65 3.33 -170.53 -0.57 -7.22 16
12 C 0.10 0.75 6.10 -3.06 -0.02 0.73 16
13 C -0.12 -1.15 6.60 -24.89 -0.16 -1.31 16
14 C 0.07 0.83 3.32 -65.56 -0.22 0.62 16
15 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16
16 N -0.66 -9.87 6.00 -105.72 -0.63 -10.51 16
17 C 0.05 0.86 6.04 -4.97 -0.03 0.83 16
18 C 0.44 10.11 7.82 -10.98 -0.09 10.03 16
19 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16
20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16
21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16
22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
24 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16
25 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16
26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
29 C 0.11 1.28 6.40 -2.53 -0.02 1.26 16
30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16
31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16
33 H 0.07 0.42 6.93 -51.93 -0.36 0.06 16
34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
35 H 0.08 0.51 5.56 -51.93 -0.29 0.22 16
36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16
38 H 0.05 0.29 6.60 -51.93 -0.34 -0.05 16
39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16
41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
42 H 0.07 0.44 8.00 -51.93 -0.42 0.02 16
43 H 0.07 0.44 5.98 -51.93 -0.31 0.13 16
44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
45 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
46 H 0.35 5.62 8.23 -39.29 -0.32 5.29 16
47 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16
48 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16
49 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16
50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16
51 H 0.08 1.00 7.99 -51.93 -0.41 0.59 16
52 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16
LS Contribution 419.00 15.07 6.31 6.31
Total: -1.00 -34.10 419.00 -9.09 -43.19
By element:
Atomic # 1 Polarization: 18.75 SS G_CDS: -8.99 Total: 9.76 kcal
Atomic # 6 Polarization: 9.23 SS G_CDS: -0.20 Total: 9.04 kcal
Atomic # 7 Polarization: -54.76 SS G_CDS: -0.54 Total: -55.29 kcal
Atomic # 8 Polarization: -28.20 SS G_CDS: -0.65 Total: -28.86 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 6.31 Total: 6.31 kcal
Total: -34.10 -9.09 -43.19 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185030825.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.495 kcal
(2) G-P(sol) polarization free energy of solvation -34.102 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds