Wall clock time and date at job start Sat Apr 11 2020 06:25:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.46710 * 2 1
4 4 C 1.53001 * 109.47143 * 175.28489 * 3 2 1
5 5 H 1.09006 * 109.47098 * 305.39766 * 4 3 2
6 6 O 1.42908 * 109.46823 * 65.39132 * 4 3 2
7 7 C 1.42897 * 113.99749 * 253.69499 * 6 4 3
8 8 C 1.53001 * 109.46622 * 185.00018 * 7 6 4
9 9 C 1.50695 * 109.47123 * 185.39400 * 4 3 2
10 10 O 1.21283 * 119.99813 * 253.30040 * 9 4 3
11 11 N 1.34770 * 120.00428 * 73.30452 * 9 4 3
12 12 C 1.47025 * 125.64544 * 355.02840 * 11 9 4
13 13 C 1.54323 * 107.27071 * 181.03561 * 12 11 9
14 14 C 1.55164 * 102.94225 * 22.19318 * 13 12 11
15 15 H 1.09003 * 111.00137 * 82.57105 * 14 13 12
16 16 N 1.46897 * 111.00463 * 206.38620 * 14 13 12
17 17 C 1.46907 * 110.99668 * 273.54465 * 16 14 13
18 18 C 1.50700 * 109.46695 * 179.97438 * 17 16 14
19 19 O 1.21287 * 120.00267 * 0.02562 * 18 17 16
20 20 N 1.34784 * 119.99971 * 179.97438 * 18 17 16
21 21 C 1.37092 * 120.00306 * 179.97438 * 20 18 17
22 22 H 1.08004 * 120.00006 * 0.02562 * 21 20 18
23 23 C 1.38954 * 120.00138 * 180.02562 * 21 20 18
24 24 N 1.31402 * 119.99699 * 359.97438 * 23 21 20
25 25 Si 1.86795 * 119.99875 * 180.02562 * 23 21 20
26 26 H 1.48505 * 109.47428 * 359.97438 * 25 23 21
27 27 H 1.48507 * 109.47181 * 119.99970 * 25 23 21
28 28 H 1.48499 * 109.47155 * 239.99617 * 25 23 21
29 29 C 1.47424 * 125.65086 * 174.99984 * 11 9 4
30 30 H 1.08998 * 109.47250 * 299.99400 * 1 2 3
31 31 H 1.09004 * 109.46972 * 59.99916 * 1 2 3
32 32 H 1.09006 * 109.46433 * 179.97438 * 1 2 3
33 33 H 1.08998 * 109.47250 * 240.00600 * 2 1 3
34 34 H 1.08995 * 109.47219 * 120.00031 * 2 1 3
35 35 H 1.08999 * 109.46805 * 55.29279 * 3 2 1
36 36 H 1.08990 * 109.47160 * 295.28633 * 3 2 1
37 37 H 1.08999 * 109.47355 * 304.99449 * 7 6 4
38 38 H 1.08994 * 109.47446 * 65.00074 * 7 6 4
39 39 H 1.09000 * 109.47222 * 60.00290 * 8 7 6
40 40 H 1.09010 * 109.47002 * 179.97438 * 8 7 6
41 41 H 1.08996 * 109.47466 * 299.99514 * 8 7 6
42 42 H 1.08994 * 109.88384 * 61.62001 * 12 11 9
43 43 H 1.09001 * 109.88345 * 300.45129 * 12 11 9
44 44 H 1.09006 * 110.72188 * 140.54832 * 13 12 11
45 45 H 1.08994 * 110.72695 * 263.83153 * 13 12 11
46 46 H 1.00896 * 111.00489 * 149.59312 * 16 14 13
47 47 H 1.08995 * 109.47070 * 300.00074 * 17 16 14
48 48 H 1.08996 * 109.47084 * 60.00373 * 17 16 14
49 49 H 0.97002 * 119.99482 * 0.02562 * 20 18 17
50 50 H 0.97002 * 119.99954 * 180.02562 * 24 23 21
51 51 H 1.08996 * 110.36632 * 37.05499 * 29 11 9
52 52 H 1.09003 * 110.46153 * 274.78035 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5653 1.4444 0.1186
5 1 3.8621 0.8726 0.9980
6 8 4.1346 0.8505 -1.0500
7 6 4.6604 -0.4612 -0.8379
8 6 5.3510 -0.9461 -2.1142
9 6 4.0572 2.8625 0.2519
10 8 4.6171 3.4002 -0.6800
11 7 3.8749 3.5334 1.4064
12 6 3.1263 3.0433 2.5731
13 6 3.1635 4.1561 3.6417
14 6 3.4486 5.4316 2.8055
15 1 2.5310 5.8254 2.3685
16 7 4.1229 6.4536 3.6172
17 6 3.1469 7.2794 4.3408
18 6 3.8741 8.3135 5.1610
19 8 5.0860 8.3586 5.1441
20 7 3.1777 9.1891 5.9127
21 6 3.8391 10.1296 6.6593
22 1 4.9184 10.1692 6.6448
23 6 3.1212 11.0319 7.4346
24 7 1.8081 10.9841 7.4517
25 14 4.0225 12.3138 8.4513
26 1 5.4868 12.1580 8.2591
27 1 3.6074 13.6718 8.0166
28 1 3.6899 12.1304 9.8868
29 6 4.3936 4.8798 1.7090
30 1 -0.3633 0.5137 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3632 -1.0278 -0.0005
33 1 1.8933 -0.5137 -0.8900
34 1 1.8933 -0.5138 0.8899
35 1 1.6093 1.9801 0.8448
36 1 1.7472 1.9314 -0.9291
37 1 5.3822 -0.4357 -0.0216
38 1 3.8479 -1.1417 -0.5835
39 1 6.1636 -0.2656 -2.3687
40 1 5.7526 -1.9465 -1.9524
41 1 4.6293 -0.9717 -2.9306
42 1 3.5959 2.1400 2.9622
43 1 2.0944 2.8350 2.2907
44 1 2.2024 4.2351 4.1499
45 1 3.9658 3.9769 4.3574
46 1 4.7291 7.0253 3.0483
47 1 2.4913 7.7770 3.6263
48 1 2.5525 6.6461 4.9994
49 1 2.2084 9.1533 5.9259
50 1 1.3068 11.6142 7.9927
51 1 4.3531 5.5103 0.8208
52 1 5.4153 4.8191 2.0840
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185030825.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:57
Heat of formation + Delta-G solvation = -147.069341 kcal
Electronic energy + Delta-G solvation = -29852.595421 eV
Core-core repulsion = 25657.829846 eV
Total energy + Delta-G solvation = -4194.765575 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.49154 -40.21262 -39.43397 -38.38938 -36.27126 -35.80780 -35.39758 -33.26993
-32.60543 -31.77177 -30.51218 -29.57481 -27.73609 -26.10328 -25.29829 -24.10374
-23.58854 -22.11110 -21.59457 -21.14441 -20.47603 -19.88965 -18.47836 -18.02275
-17.87856 -17.15743 -16.99216 -16.78979 -16.53735 -16.35180 -15.95820 -15.68253
-15.45422 -15.25992 -14.94843 -14.61095 -14.43553 -14.15785 -14.07062 -13.95234
-13.74067 -13.57961 -13.48867 -13.24299 -13.13709 -12.90693 -12.87481 -12.83539
-12.48462 -12.39476 -12.23417 -12.14141 -12.12882 -12.10073 -11.97066 -11.74870
-11.51024 -11.45158 -11.10549 -10.39712 -10.34240 -10.00885 -9.75573 -9.42635
-8.46599 -5.94922 1.36937 1.42656 1.43414 1.56156 1.60162 2.05929
2.29590 2.73307 2.93022 3.20974 3.25082 3.50289 3.61808 3.69998
3.78780 3.82539 4.05741 4.11932 4.16108 4.21021 4.26694 4.31979
4.35256 4.37616 4.47042 4.49983 4.54563 4.61539 4.66043 4.70546
4.74857 4.82801 4.84932 4.93554 5.00697 5.02631 5.04374 5.14029
5.24599 5.25383 5.28407 5.34101 5.42011 5.46655 5.87356 6.08157
6.09599 6.28517 6.41208 6.60640 7.02131 7.13457 7.56988 8.12493
8.70885
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.024965 B = 0.001720 C = 0.001643
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1121.290246 B =16278.976100 C =17038.242367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.118 4.118
3 C -0.128 4.128
4 C 0.086 3.914
5 H 0.114 0.886
6 O -0.386 6.386
7 C 0.045 3.955
8 C -0.152 4.152
9 C 0.515 3.485
10 O -0.578 6.578
11 N -0.612 5.612
12 C 0.095 3.905
13 C -0.118 4.118
14 C 0.077 3.923
15 H 0.071 0.929
16 N -0.668 5.668
17 C 0.068 3.932
18 C 0.437 3.563
19 O -0.625 6.625
20 N -0.572 5.572
21 C -0.334 4.334
22 H 0.078 0.922
23 C -0.012 4.012
24 N -0.919 5.919
25 Si 0.992 3.008
26 H -0.275 1.275
27 H -0.272 1.272
28 H -0.270 1.270
29 C 0.108 3.892
30 H 0.062 0.938
31 H 0.046 0.954
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.080 0.920
35 H 0.096 0.904
36 H 0.057 0.943
37 H 0.055 0.945
38 H 0.076 0.924
39 H 0.046 0.954
40 H 0.095 0.905
41 H 0.060 0.940
42 H 0.094 0.906
43 H 0.098 0.902
44 H 0.103 0.897
45 H 0.080 0.920
46 H 0.345 0.655
47 H 0.067 0.933
48 H 0.112 0.888
49 H 0.397 0.603
50 H 0.278 0.722
51 H 0.063 0.937
52 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.766 -27.326 -12.498 30.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.155 4.155
3 C -0.166 4.166
4 C 0.025 3.975
5 H 0.132 0.868
6 O -0.305 6.305
7 C -0.031 4.031
8 C -0.209 4.209
9 C 0.304 3.696
10 O -0.457 6.457
11 N -0.347 5.347
12 C -0.026 4.026
13 C -0.157 4.157
14 C -0.034 4.034
15 H 0.089 0.911
16 N -0.301 5.301
17 C -0.064 4.064
18 C 0.225 3.775
19 O -0.511 6.511
20 N -0.210 5.210
21 C -0.463 4.463
22 H 0.096 0.904
23 C -0.212 4.212
24 N -0.560 5.560
25 Si 0.816 3.184
26 H -0.199 1.199
27 H -0.197 1.197
28 H -0.195 1.195
29 C -0.015 4.015
30 H 0.081 0.919
31 H 0.065 0.935
32 H 0.082 0.918
33 H 0.080 0.920
34 H 0.099 0.901
35 H 0.114 0.886
36 H 0.076 0.924
37 H 0.073 0.927
38 H 0.094 0.906
39 H 0.065 0.935
40 H 0.114 0.886
41 H 0.079 0.921
42 H 0.113 0.887
43 H 0.116 0.884
44 H 0.121 0.879
45 H 0.099 0.901
46 H 0.164 0.836
47 H 0.085 0.915
48 H 0.130 0.870
49 H 0.231 0.769
50 H 0.087 0.913
51 H 0.081 0.919
52 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -4.681 -27.292 -12.635 30.436
hybrid contribution -0.118 1.647 -0.142 1.658
sum -4.799 -25.644 -12.776 29.050
Atomic orbital electron populations
1.21765 0.94877 1.02316 1.02017 1.21526 0.96646 0.94551 1.02826
1.22049 0.91073 0.99897 1.03548 1.22023 0.95180 0.89391 0.90912
0.86809 1.88029 1.78118 1.32016 1.32331 1.22931 0.97904 0.83020
0.99232 1.21774 1.00441 1.01770 0.96888 1.21131 0.78734 0.89171
0.80546 1.90698 1.44813 1.70465 1.39678 1.48430 1.53811 1.17598
1.14894 1.22498 0.97545 0.98386 0.84207 1.22734 1.04352 0.91581
0.96990 1.22693 0.95533 0.93030 0.92107 0.91143 1.60102 1.20336
1.17681 1.31978 1.21566 0.93623 0.93834 0.97389 1.20894 0.88039
0.84604 0.83997 1.90503 1.15989 1.75197 1.69416 1.41921 1.09387
1.29047 1.40621 1.19694 0.92909 1.10445 1.23300 0.90424 1.26003
0.96360 1.00137 0.98654 1.69665 1.06143 1.38663 1.41502 0.84890
0.78023 0.77606 0.77929 1.19940 1.19689 1.19542 1.22168 0.98060
0.83735 0.97575 0.91859 0.93458 0.91796 0.92020 0.90107 0.88579
0.92445 0.92688 0.90599 0.93458 0.88636 0.92099 0.88743 0.88407
0.87877 0.90120 0.83583 0.91472 0.86987 0.76876 0.91301 0.91885
0.91200
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16
2 C -0.12 -1.00 5.07 30.60 0.16 -0.85 16
3 C -0.13 -1.61 4.83 30.60 0.15 -1.46 16
4 C 0.09 1.44 2.05 29.85 0.06 1.50 16
5 H 0.11 1.21 7.32 -2.38 -0.02 1.19 16
6 O -0.39 -8.09 9.26 -130.29 -1.21 -9.30 16
7 C 0.04 0.59 6.13 71.98 0.44 1.03 16
8 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16
9 C 0.51 12.76 7.16 87.66 0.63 13.38 16
10 O -0.58 -20.56 16.78 15.65 0.26 -20.29 16
11 N -0.61 -12.44 3.33 -811.81 -2.70 -15.14 16
12 C 0.10 1.15 6.10 86.73 0.53 1.68 16
13 C -0.12 -1.85 6.60 31.79 0.21 -1.64 16
14 C 0.08 1.63 3.32 46.31 0.15 1.79 16
15 H 0.07 1.39 7.92 -2.39 -0.02 1.37 16
16 N -0.67 -19.61 6.00 -488.39 -2.93 -22.54 16
17 C 0.07 2.16 6.04 85.56 0.52 2.67 16
18 C 0.44 20.20 7.82 87.66 0.69 20.88 16
19 O -0.62 -34.19 15.78 -3.05 -0.05 -34.24 16
20 N -0.57 -28.71 5.29 -306.98 -1.62 -30.34 16
21 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16
22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16
23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
24 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16
25 Si 0.99 42.62 29.55 68.60 2.03 44.65 16
26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16
28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
29 C 0.11 2.56 6.40 86.86 0.56 3.12 16
30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16
32 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16
33 H 0.06 0.63 6.93 -2.39 -0.02 0.61 16
34 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16
35 H 0.10 0.88 5.56 -2.39 -0.01 0.87 16
36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.05 0.64 8.04 -2.39 -0.02 0.62 16
38 H 0.08 0.63 6.60 -2.39 -0.02 0.61 16
39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
40 H 0.09 0.68 8.14 -2.38 -0.02 0.67 16
41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
42 H 0.09 0.76 8.00 -2.39 -0.02 0.74 16
43 H 0.10 0.74 5.98 -2.39 -0.01 0.72 16
44 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16
45 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16
46 H 0.35 11.13 8.23 -89.70 -0.74 10.39 16
47 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16
48 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16
49 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16
50 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16
51 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16
52 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -77.30 419.00 0.34 -76.96
By element:
Atomic # 1 Polarization: 36.92 SS G_CDS: -0.55 Total: 36.38 kcal
Atomic # 6 Polarization: 15.56 SS G_CDS: 6.82 Total: 22.38 kcal
Atomic # 7 Polarization: -109.56 SS G_CDS: -6.97 Total: -116.53 kcal
Atomic # 8 Polarization: -62.84 SS G_CDS: -0.99 Total: -63.83 kcal
Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal
Total: -77.30 0.34 -76.96 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185030825.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.110 kcal
(2) G-P(sol) polarization free energy of solvation -77.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.406 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds