Wall clock time and date at job start Sat Apr 11 2020 06:26:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42894 * 114.00057 * 2 1
4 4 C 1.53002 * 109.47230 * 179.97438 * 3 2 1
5 5 C 1.53004 * 109.46805 * 60.00005 * 4 3 2
6 6 C 1.52999 * 109.47219 * 300.00089 * 4 3 2
7 7 C 1.50699 * 109.47279 * 179.97438 * 4 3 2
8 8 O 1.21281 * 119.99814 * 5.42445 * 7 4 3
9 9 N 1.34778 * 120.00166 * 185.42956 * 7 4 3
10 10 C 1.47024 * 125.64410 * 5.02485 * 9 7 4
11 11 C 1.54325 * 107.26770 * 181.02885 * 10 9 7
12 12 C 1.55159 * 102.94191 * 22.19274 * 11 10 9
13 13 H 1.09005 * 111.00027 * 82.57499 * 12 11 10
14 14 N 1.46906 * 111.03536 * 206.40699 * 12 11 10
15 15 C 1.46898 * 111.00205 * 300.71240 * 14 12 11
16 16 C 1.46903 * 110.99465 * 176.76342 * 14 12 11
17 17 C 1.50698 * 109.46827 * 190.00395 * 16 14 12
18 18 O 1.21294 * 119.99934 * 359.97438 * 17 16 14
19 19 N 1.34775 * 120.00301 * 180.02562 * 17 16 14
20 20 C 1.37091 * 120.00458 * 179.97438 * 19 17 16
21 21 H 1.08000 * 120.00238 * 359.97438 * 20 19 17
22 22 C 1.38950 * 120.00242 * 179.97438 * 20 19 17
23 23 N 1.31412 * 120.00144 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00212 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47094 * 59.99739 * 24 22 20
26 26 H 1.48494 * 109.47154 * 180.02562 * 24 22 20
27 27 H 1.48503 * 109.46776 * 299.99912 * 24 22 20
28 28 C 1.47421 * 125.64756 * 184.99193 * 9 7 4
29 29 H 1.09003 * 109.47070 * 300.00069 * 1 2 3
30 30 H 1.08997 * 109.47000 * 60.00230 * 1 2 3
31 31 H 1.09001 * 109.46815 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47275 * 59.99929 * 3 2 1
33 33 H 1.09005 * 109.46886 * 299.99995 * 3 2 1
34 34 H 1.09001 * 109.46870 * 195.63915 * 5 4 3
35 35 H 1.08996 * 109.47256 * 315.63828 * 5 4 3
36 36 H 1.08998 * 109.46883 * 75.64078 * 5 4 3
37 37 H 1.08998 * 109.47125 * 303.86266 * 6 4 3
38 38 H 1.09006 * 109.47226 * 63.86514 * 6 4 3
39 39 H 1.08995 * 109.46795 * 183.86391 * 6 4 3
40 40 H 1.08991 * 109.88770 * 300.44483 * 10 9 7
41 41 H 1.08995 * 109.87984 * 61.46083 * 10 9 7
42 42 H 1.09003 * 110.71845 * 263.83523 * 11 10 9
43 43 H 1.09000 * 110.72153 * 140.56279 * 11 10 9
44 44 H 1.09006 * 109.46802 * 66.24633 * 15 14 12
45 45 H 1.09000 * 109.47234 * 186.24045 * 15 14 12
46 46 H 1.08996 * 109.47653 * 306.24696 * 15 14 12
47 47 H 1.09000 * 109.47148 * 309.99691 * 16 14 12
48 48 H 1.08995 * 109.47581 * 70.00423 * 16 14 12
49 49 H 0.97004 * 119.99688 * 359.97438 * 19 17 16
50 50 H 0.96995 * 120.00285 * 180.02562 * 23 22 20
51 51 H 1.08998 * 110.36642 * 37.06858 * 28 9 7
52 52 H 1.09001 * 110.36944 * 274.73654 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 6 3.9874 0.4251 -1.2483
6 6 3.9865 0.4255 1.2502
7 6 4.1485 2.5613 0.0000
8 8 3.4398 3.5406 0.0984
9 7 5.4841 2.7042 -0.1100
10 6 6.4462 1.6165 -0.3397
11 6 7.8539 2.2483 -0.3681
12 6 7.6548 3.5756 0.4105
13 1 7.7067 3.4089 1.4864
14 7 8.6344 4.5861 -0.0108
15 6 10.0072 4.1154 0.2164
16 6 8.3970 5.8656 0.6707
17 6 9.2515 6.9357 0.0419
18 8 9.9864 6.6596 -0.8827
19 7 9.2000 8.1995 0.5075
20 6 9.9778 9.1729 -0.0642
21 1 10.6321 8.9272 -0.8875
22 6 9.9243 10.4759 0.4156
23 7 9.1285 10.7750 1.4177
24 14 10.9836 11.8025 -0.3639
25 1 10.6335 11.9347 -1.8009
26 1 10.7441 13.0958 0.3255
27 1 12.4157 11.4314 -0.2354
28 6 6.2222 3.9773 -0.0207
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.6886 1.8463 0.8899
33 1 1.6886 1.8463 -0.8900
34 1 5.0187 0.0964 -1.1203
35 1 3.3453 -0.4429 -1.3979
36 1 3.9201 1.0808 -2.1164
37 1 3.6060 0.9296 2.1386
38 1 3.5992 -0.5928 1.2163
39 1 5.0755 0.3991 1.2859
40 1 6.3829 0.8886 0.4691
41 1 6.2360 1.1308 -1.2926
42 1 8.1673 2.4459 -1.3932
43 1 8.5746 1.6075 0.1399
44 1 10.2142 3.2690 -0.4386
45 1 10.7082 4.9217 0.0006
46 1 10.1180 3.8060 1.2557
47 1 7.3458 6.1380 0.5764
48 1 8.6539 5.7686 1.7255
49 1 8.6126 8.4202 1.2473
50 1 9.0909 11.6846 1.7524
51 1 5.7688 4.6269 0.7280
52 1 6.2431 4.4726 -0.9915
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001191361366.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:34
Heat of formation + Delta-G solvation = -96.916341 kcal
Electronic energy + Delta-G solvation = -30806.720185 eV
Core-core repulsion = 26614.129407 eV
Total energy + Delta-G solvation = -4192.590778 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.86618 -39.06630 -38.22953 -37.56340 -35.68305 -34.96277 -33.80585 -31.27570
-30.91650 -29.18996 -27.91029 -27.74242 -27.57612 -25.96008 -25.00709 -24.51745
-23.11747 -21.48939 -20.28950 -19.31167 -19.03952 -17.83985 -17.19650 -16.82076
-16.33028 -16.22239 -16.10667 -15.55020 -15.22715 -14.82194 -14.65367 -14.59473
-14.54649 -14.04532 -13.80334 -13.62412 -13.44366 -13.38642 -13.25569 -12.99777
-12.54188 -12.47712 -12.37657 -12.18435 -12.03325 -11.96839 -11.66517 -11.52399
-11.40473 -11.38435 -11.25806 -11.00779 -10.92697 -10.83839 -10.76309 -10.43395
-10.20425 -9.99571 -9.84744 -9.45940 -8.79374 -8.46895 -7.99187 -7.90711
-6.40517 -3.81487 2.42656 2.59688 3.20743 3.26614 3.30698 3.48050
3.89526 3.94095 4.08911 4.22801 4.33544 4.46532 4.48556 4.58293
4.75825 4.84115 4.98825 5.00181 5.04692 5.11012 5.15393 5.22856
5.27461 5.28709 5.30605 5.32057 5.36350 5.47165 5.49764 5.57536
5.62372 5.64857 5.68076 5.77552 5.86616 5.88332 5.91321 5.92448
5.93775 6.04803 6.13562 6.28488 6.49237 6.77398 7.18202 7.29017
7.35611 7.55968 7.94886 8.06777 8.62418 9.18783 9.55191 10.06732
10.77074
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.020101 B = 0.002071 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1392.653320 B =13517.039158 C =14473.012691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.389 6.389
3 C 0.085 3.915
4 C -0.074 4.074
5 C -0.150 4.150
6 C -0.140 4.140
7 C 0.541 3.459
8 O -0.539 6.539
9 N -0.611 5.611
10 C 0.091 3.909
11 C -0.124 4.124
12 C 0.069 3.931
13 H 0.055 0.945
14 N -0.507 5.507
15 C 0.025 3.975
16 C 0.042 3.958
17 C 0.444 3.556
18 O -0.578 6.578
19 N -0.563 5.563
20 C -0.299 4.299
21 H 0.103 0.897
22 C 0.022 3.978
23 N -0.901 5.901
24 Si 0.931 3.069
25 H -0.273 1.273
26 H -0.285 1.285
27 H -0.274 1.274
28 C 0.113 3.887
29 H 0.041 0.959
30 H 0.041 0.959
31 H 0.086 0.914
32 H 0.059 0.941
33 H 0.057 0.943
34 H 0.072 0.928
35 H 0.077 0.923
36 H 0.058 0.942
37 H 0.059 0.941
38 H 0.077 0.923
39 H 0.065 0.935
40 H 0.074 0.926
41 H 0.080 0.920
42 H 0.091 0.909
43 H 0.081 0.919
44 H 0.063 0.937
45 H 0.096 0.904
46 H 0.014 0.986
47 H 0.088 0.912
48 H 0.049 0.951
49 H 0.392 0.608
50 H 0.272 0.728
51 H 0.078 0.922
52 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.917 -24.288 0.657 27.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.308 6.308
3 C 0.008 3.992
4 C -0.078 4.078
5 C -0.207 4.207
6 C -0.197 4.197
7 C 0.329 3.671
8 O -0.416 6.416
9 N -0.345 5.345
10 C -0.032 4.032
11 C -0.162 4.162
12 C -0.040 4.040
13 H 0.073 0.927
14 N -0.231 5.231
15 C -0.123 4.123
16 C -0.089 4.089
17 C 0.229 3.771
18 O -0.462 6.462
19 N -0.200 5.200
20 C -0.429 4.429
21 H 0.121 0.879
22 C -0.180 4.180
23 N -0.542 5.542
24 Si 0.758 3.242
25 H -0.199 1.199
26 H -0.210 1.210
27 H -0.199 1.199
28 C -0.010 4.010
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.104 0.896
32 H 0.077 0.923
33 H 0.075 0.925
34 H 0.091 0.909
35 H 0.096 0.904
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.095 0.905
39 H 0.084 0.916
40 H 0.092 0.908
41 H 0.098 0.902
42 H 0.110 0.890
43 H 0.100 0.900
44 H 0.081 0.919
45 H 0.114 0.886
46 H 0.033 0.967
47 H 0.107 0.893
48 H 0.067 0.933
49 H 0.225 0.775
50 H 0.082 0.918
51 H 0.096 0.904
52 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -11.862 -23.841 -0.313 26.630
hybrid contribution -0.015 1.056 1.059 1.496
sum -11.877 -22.784 0.746 25.705
Atomic orbital electron populations
1.22731 0.80746 1.02653 1.00224 1.87779 1.19770 1.27744 1.95520
1.22204 0.91088 0.84181 1.01679 1.20622 0.94931 0.93040 0.99171
1.22097 1.02522 1.00810 0.95294 1.21895 1.01641 1.00996 0.95217
1.20014 0.80563 0.90656 0.75907 1.90730 1.60001 1.40878 1.49949
1.48280 1.05319 1.09420 1.71525 1.22535 0.88505 0.90379 1.01801
1.22735 0.95234 0.95523 1.02751 1.22787 0.91826 0.92255 0.97172
0.92720 1.61598 1.02928 1.01191 1.57378 1.22508 0.89909 1.02165
0.97684 1.21917 1.00954 0.90080 0.95974 1.19670 0.86961 0.83512
0.86912 1.90490 1.43333 1.81301 1.31081 1.41861 1.39156 1.06721
1.32230 1.19641 1.19978 0.87546 1.15730 0.87942 1.25268 0.97774
0.98421 0.96491 1.69603 1.38007 1.21087 1.25551 0.85916 0.79935
0.79262 0.79088 1.19882 1.21004 1.19941 1.22279 0.89992 0.85723
1.02956 0.93995 0.93997 0.89565 0.92272 0.92500 0.90905 0.90395
0.92281 0.92229 0.90453 0.91594 0.90796 0.90163 0.88991 0.90004
0.91855 0.88574 0.96723 0.89344 0.93340 0.77483 0.91811 0.90401
0.89779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 11.01 101.05 1.11 1.33 16
2 O -0.39 -3.52 9.20 -35.23 -0.32 -3.84 16
3 C 0.09 0.85 4.11 37.16 0.15 1.00 16
4 C -0.07 -0.70 0.58 -155.66 -0.09 -0.80 16
5 C -0.15 -1.16 7.62 37.16 0.28 -0.88 16
6 C -0.14 -1.11 8.12 37.16 0.30 -0.81 16
7 C 0.54 6.81 6.52 -10.99 -0.07 6.74 16
8 O -0.54 -8.87 16.28 5.56 0.09 -8.78 16
9 N -0.61 -6.97 3.32 -170.53 -0.57 -7.54 16
10 C 0.09 0.74 5.02 -3.06 -0.02 0.73 16
11 C -0.12 -1.15 5.33 -24.89 -0.13 -1.28 16
12 C 0.07 0.84 2.69 -65.56 -0.18 0.67 16
13 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
14 N -0.51 -7.98 4.40 -233.74 -1.03 -9.01 16
15 C 0.02 0.38 8.89 60.06 0.53 0.91 16
16 C 0.04 0.74 5.34 -4.98 -0.03 0.72 16
17 C 0.44 10.36 7.41 -10.99 -0.08 10.28 16
18 O -0.58 -15.24 13.97 5.54 0.08 -15.17 16
19 N -0.56 -14.26 5.29 -10.97 -0.06 -14.32 16
20 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16
21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16
22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
23 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16
24 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16
25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16
28 C 0.11 1.49 5.45 -2.53 -0.01 1.47 16
29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16
32 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16
33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.45 5.03 -51.93 -0.26 0.19 16
35 H 0.08 0.59 7.28 -51.93 -0.38 0.21 16
36 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16
37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
38 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16
39 H 0.07 0.45 5.14 -51.93 -0.27 0.18 16
40 H 0.07 0.48 5.53 -51.93 -0.29 0.20 16
41 H 0.08 0.56 5.82 -51.93 -0.30 0.26 16
42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
44 H 0.06 0.82 7.39 -51.93 -0.38 0.44 16
45 H 0.10 1.81 5.78 -51.93 -0.30 1.51 16
46 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16
47 H 0.09 1.47 6.80 -51.93 -0.35 1.11 16
48 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16
49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16
50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
51 H 0.08 1.10 7.74 -51.93 -0.40 0.69 16
52 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
LS Contribution 402.91 15.07 6.07 6.07
Total: -1.00 -33.01 402.91 -7.16 -40.16
By element:
Atomic # 1 Polarization: 16.81 SS G_CDS: -8.66 Total: 8.15 kcal
Atomic # 6 Polarization: 10.56 SS G_CDS: 1.54 Total: 12.10 kcal
Atomic # 7 Polarization: -53.87 SS G_CDS: -0.93 Total: -54.79 kcal
Atomic # 8 Polarization: -27.64 SS G_CDS: -0.16 Total: -27.79 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -33.01 -7.16 -40.16 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191361366.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.753 kcal
(2) G-P(sol) polarization free energy of solvation -33.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds