Wall clock time and date at job start Sat Apr 11 2020 06:26:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42894 * 114.00057 * 2 1
4 4 C 1.53002 * 109.47230 * 179.97438 * 3 2 1
5 5 C 1.53004 * 109.46805 * 60.00005 * 4 3 2
6 6 C 1.52999 * 109.47219 * 300.00089 * 4 3 2
7 7 C 1.50699 * 109.47279 * 179.97438 * 4 3 2
8 8 O 1.21281 * 119.99814 * 5.42445 * 7 4 3
9 9 N 1.34778 * 120.00166 * 185.42956 * 7 4 3
10 10 C 1.47024 * 125.64410 * 5.02485 * 9 7 4
11 11 C 1.54325 * 107.26770 * 181.02885 * 10 9 7
12 12 C 1.55159 * 102.94191 * 22.19274 * 11 10 9
13 13 H 1.09005 * 111.00027 * 82.57499 * 12 11 10
14 14 N 1.46906 * 111.03536 * 206.40699 * 12 11 10
15 15 C 1.46898 * 111.00205 * 300.71240 * 14 12 11
16 16 C 1.46903 * 110.99465 * 176.76342 * 14 12 11
17 17 C 1.50698 * 109.46827 * 190.00395 * 16 14 12
18 18 O 1.21294 * 119.99934 * 359.97438 * 17 16 14
19 19 N 1.34775 * 120.00301 * 180.02562 * 17 16 14
20 20 C 1.37091 * 120.00458 * 179.97438 * 19 17 16
21 21 H 1.08000 * 120.00238 * 359.97438 * 20 19 17
22 22 C 1.38950 * 120.00242 * 179.97438 * 20 19 17
23 23 N 1.31412 * 120.00144 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00212 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47094 * 59.99739 * 24 22 20
26 26 H 1.48494 * 109.47154 * 180.02562 * 24 22 20
27 27 H 1.48503 * 109.46776 * 299.99912 * 24 22 20
28 28 C 1.47421 * 125.64756 * 184.99193 * 9 7 4
29 29 H 1.09003 * 109.47070 * 300.00069 * 1 2 3
30 30 H 1.08997 * 109.47000 * 60.00230 * 1 2 3
31 31 H 1.09001 * 109.46815 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47275 * 59.99929 * 3 2 1
33 33 H 1.09005 * 109.46886 * 299.99995 * 3 2 1
34 34 H 1.09001 * 109.46870 * 195.63915 * 5 4 3
35 35 H 1.08996 * 109.47256 * 315.63828 * 5 4 3
36 36 H 1.08998 * 109.46883 * 75.64078 * 5 4 3
37 37 H 1.08998 * 109.47125 * 303.86266 * 6 4 3
38 38 H 1.09006 * 109.47226 * 63.86514 * 6 4 3
39 39 H 1.08995 * 109.46795 * 183.86391 * 6 4 3
40 40 H 1.08991 * 109.88770 * 300.44483 * 10 9 7
41 41 H 1.08995 * 109.87984 * 61.46083 * 10 9 7
42 42 H 1.09003 * 110.71845 * 263.83523 * 11 10 9
43 43 H 1.09000 * 110.72153 * 140.56279 * 11 10 9
44 44 H 1.09006 * 109.46802 * 66.24633 * 15 14 12
45 45 H 1.09000 * 109.47234 * 186.24045 * 15 14 12
46 46 H 1.08996 * 109.47653 * 306.24696 * 15 14 12
47 47 H 1.09000 * 109.47148 * 309.99691 * 16 14 12
48 48 H 1.08995 * 109.47581 * 70.00423 * 16 14 12
49 49 H 0.97004 * 119.99688 * 359.97438 * 19 17 16
50 50 H 0.96995 * 120.00285 * 180.02562 * 23 22 20
51 51 H 1.08998 * 110.36642 * 37.06858 * 28 9 7
52 52 H 1.09001 * 110.36944 * 274.73654 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 6 3.9874 0.4251 -1.2483
6 6 3.9865 0.4255 1.2502
7 6 4.1485 2.5613 0.0000
8 8 3.4398 3.5406 0.0984
9 7 5.4841 2.7042 -0.1100
10 6 6.4462 1.6165 -0.3397
11 6 7.8539 2.2483 -0.3681
12 6 7.6548 3.5756 0.4105
13 1 7.7067 3.4089 1.4864
14 7 8.6344 4.5861 -0.0108
15 6 10.0072 4.1154 0.2164
16 6 8.3970 5.8656 0.6707
17 6 9.2515 6.9357 0.0419
18 8 9.9864 6.6596 -0.8827
19 7 9.2000 8.1995 0.5075
20 6 9.9778 9.1729 -0.0642
21 1 10.6321 8.9272 -0.8875
22 6 9.9243 10.4759 0.4156
23 7 9.1285 10.7750 1.4177
24 14 10.9836 11.8025 -0.3639
25 1 10.6335 11.9347 -1.8009
26 1 10.7441 13.0958 0.3255
27 1 12.4157 11.4314 -0.2354
28 6 6.2222 3.9773 -0.0207
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.6886 1.8463 0.8899
33 1 1.6886 1.8463 -0.8900
34 1 5.0187 0.0964 -1.1203
35 1 3.3453 -0.4429 -1.3979
36 1 3.9201 1.0808 -2.1164
37 1 3.6060 0.9296 2.1386
38 1 3.5992 -0.5928 1.2163
39 1 5.0755 0.3991 1.2859
40 1 6.3829 0.8886 0.4691
41 1 6.2360 1.1308 -1.2926
42 1 8.1673 2.4459 -1.3932
43 1 8.5746 1.6075 0.1399
44 1 10.2142 3.2690 -0.4386
45 1 10.7082 4.9217 0.0006
46 1 10.1180 3.8060 1.2557
47 1 7.3458 6.1380 0.5764
48 1 8.6539 5.7686 1.7255
49 1 8.6126 8.4202 1.2473
50 1 9.0909 11.6846 1.7524
51 1 5.7688 4.6269 0.7280
52 1 6.2431 4.4726 -0.9915
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001191361366.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:32
Heat of formation + Delta-G solvation = -121.765915 kcal
Electronic energy + Delta-G solvation = -30807.797743 eV
Core-core repulsion = 26614.129407 eV
Total energy + Delta-G solvation = -4193.668336 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.77962 -40.47120 -39.37330 -38.63085 -36.87486 -35.96743 -35.61707 -33.28514
-31.91236 -30.12790 -29.34336 -28.35248 -28.25425 -26.75527 -26.60775 -25.65187
-24.30171 -22.30027 -21.42328 -20.87440 -20.08122 -19.83498 -18.10159 -17.85316
-17.57175 -17.18327 -16.92142 -16.63042 -16.41612 -16.33537 -16.07226 -15.65985
-15.52078 -15.42172 -15.13173 -14.86857 -14.32944 -14.30508 -14.15978 -14.08406
-13.81346 -13.52784 -13.34476 -13.16346 -13.12733 -13.08314 -12.80654 -12.74908
-12.64055 -12.47855 -12.41033 -12.21836 -12.13559 -12.07260 -11.85796 -11.71407
-11.53688 -11.44576 -10.81948 -10.68057 -10.28071 -10.00243 -9.72416 -9.25343
-8.46193 -5.95045 1.39433 1.41005 1.47369 1.52132 1.70205 2.05130
2.28079 2.68768 2.87004 3.20238 3.26557 3.37965 3.53618 3.65865
3.75968 3.86653 4.04550 4.11898 4.17667 4.22994 4.28962 4.37648
4.40068 4.45757 4.49123 4.54932 4.57816 4.59451 4.59927 4.71919
4.75142 4.76497 4.79310 4.85756 4.86865 4.92008 5.00815 5.03651
5.15389 5.17670 5.27026 5.32726 5.36769 5.41022 5.85125 6.04392
6.10805 6.19687 6.42432 6.60195 6.99335 7.12777 7.56298 8.11627
8.71050
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.020101 B = 0.002071 C = 0.001934
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1392.653320 B =13517.039158 C =14473.012691
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.394 6.394
3 C 0.089 3.911
4 C -0.070 4.070
5 C -0.145 4.145
6 C -0.135 4.135
7 C 0.534 3.466
8 O -0.589 6.589
9 N -0.609 5.609
10 C 0.088 3.912
11 C -0.116 4.116
12 C 0.074 3.926
13 H 0.070 0.930
14 N -0.524 5.524
15 C 0.030 3.970
16 C 0.055 3.945
17 C 0.443 3.557
18 O -0.610 6.610
19 N -0.576 5.576
20 C -0.331 4.331
21 H 0.081 0.919
22 C -0.016 4.016
23 N -0.922 5.922
24 Si 0.994 3.006
25 H -0.273 1.273
26 H -0.272 1.272
27 H -0.270 1.270
28 C 0.113 3.887
29 H 0.044 0.956
30 H 0.044 0.956
31 H 0.107 0.893
32 H 0.045 0.955
33 H 0.043 0.957
34 H 0.095 0.905
35 H 0.084 0.916
36 H 0.047 0.953
37 H 0.048 0.952
38 H 0.088 0.912
39 H 0.082 0.918
40 H 0.103 0.897
41 H 0.098 0.902
42 H 0.082 0.918
43 H 0.111 0.889
44 H 0.087 0.913
45 H 0.053 0.947
46 H 0.036 0.964
47 H 0.097 0.903
48 H 0.068 0.932
49 H 0.394 0.606
50 H 0.277 0.723
51 H 0.061 0.939
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.619 -26.934 1.101 29.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.313 6.313
3 C 0.012 3.988
4 C -0.073 4.073
5 C -0.202 4.202
6 C -0.192 4.192
7 C 0.324 3.676
8 O -0.469 6.469
9 N -0.341 5.341
10 C -0.033 4.033
11 C -0.154 4.154
12 C -0.035 4.035
13 H 0.088 0.912
14 N -0.249 5.249
15 C -0.117 4.117
16 C -0.076 4.076
17 C 0.230 3.770
18 O -0.496 6.496
19 N -0.213 5.213
20 C -0.461 4.461
21 H 0.099 0.901
22 C -0.215 4.215
23 N -0.563 5.563
24 Si 0.817 3.183
25 H -0.198 1.198
26 H -0.196 1.196
27 H -0.195 1.195
28 C -0.011 4.011
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.125 0.875
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.113 0.887
35 H 0.102 0.898
36 H 0.067 0.933
37 H 0.068 0.932
38 H 0.107 0.893
39 H 0.100 0.900
40 H 0.120 0.880
41 H 0.116 0.884
42 H 0.101 0.899
43 H 0.129 0.871
44 H 0.105 0.895
45 H 0.072 0.928
46 H 0.054 0.946
47 H 0.115 0.885
48 H 0.086 0.914
49 H 0.228 0.772
50 H 0.086 0.914
51 H 0.080 0.920
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -11.557 -26.535 0.139 28.943
hybrid contribution -0.161 1.815 0.893 2.029
sum -11.718 -24.720 1.032 27.376
Atomic orbital electron populations
1.22937 0.79500 1.04115 1.00511 1.87756 1.21153 1.26854 1.95507
1.22076 0.91820 0.84529 1.00410 1.20629 0.94272 0.91334 1.01075
1.22092 1.03946 1.00395 0.93762 1.21888 1.02630 1.01017 0.93672
1.20663 0.80627 0.91406 0.74885 1.90703 1.61230 1.42708 1.52288
1.48346 1.05456 1.09665 1.70665 1.22813 0.86883 0.89695 1.03917
1.22761 0.96542 0.94057 1.02039 1.22809 0.89789 0.92522 0.98400
0.91231 1.61533 1.04162 1.01277 1.57947 1.22403 0.88473 1.01263
0.99564 1.21736 0.99864 0.89523 0.96487 1.20668 0.86382 0.83857
0.86047 1.90464 1.44695 1.81941 1.32519 1.41952 1.39434 1.07296
1.32642 1.19632 1.21170 0.89028 1.16273 0.90095 1.26069 0.98740
0.99917 0.96784 1.69675 1.38703 1.21784 1.26158 0.84975 0.78301
0.76814 0.78170 1.19793 1.19638 1.19482 1.22120 0.91186 0.86585
1.01203 0.93747 0.93747 0.87500 0.93654 0.93844 0.88695 0.89761
0.93336 0.93239 0.89281 0.89971 0.87963 0.88372 0.89916 0.87062
0.89470 0.92828 0.94578 0.88503 0.91379 0.77213 0.91366 0.92002
0.92174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 113.37 1.25 1.55 16
2 O -0.39 -6.60 9.20 -148.98 -1.37 -7.97 16
3 C 0.09 1.75 4.11 71.98 0.30 2.05 16
4 C -0.07 -1.22 0.58 -52.93 -0.03 -1.26 16
5 C -0.15 -1.88 7.62 71.98 0.55 -1.33 16
6 C -0.14 -1.77 8.12 71.98 0.58 -1.18 16
7 C 0.53 13.24 6.52 87.66 0.57 13.82 16
8 O -0.59 -20.15 16.28 -3.03 -0.05 -20.19 16
9 N -0.61 -13.02 3.32 -811.82 -2.70 -15.72 16
10 C 0.09 1.12 5.02 86.73 0.44 1.56 16
11 C -0.12 -1.73 5.33 31.78 0.17 -1.56 16
12 C 0.07 1.63 2.69 46.31 0.12 1.76 16
13 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16
14 N -0.52 -15.97 4.40 -893.42 -3.93 -19.90 16
15 C 0.03 0.87 8.89 127.69 1.14 2.01 16
16 C 0.06 1.94 5.34 85.56 0.46 2.40 16
17 C 0.44 21.22 7.41 87.66 0.65 21.87 16
18 O -0.61 -33.27 13.97 -3.07 -0.04 -33.32 16
19 N -0.58 -30.08 5.29 -306.99 -1.62 -31.70 16
20 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16
21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16
22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16
23 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16
24 Si 0.99 43.52 29.55 68.60 2.03 45.54 16
25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16
27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
28 C 0.11 2.93 5.45 86.86 0.47 3.40 16
29 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16
33 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16
34 H 0.09 0.78 5.03 -2.39 -0.01 0.77 16
35 H 0.08 1.03 7.28 -2.39 -0.02 1.02 16
36 H 0.05 0.74 8.04 -2.39 -0.02 0.72 16
37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
38 H 0.09 1.00 7.80 -2.38 -0.02 0.98 16
39 H 0.08 0.78 5.14 -2.39 -0.01 0.77 16
40 H 0.10 0.80 5.53 -2.39 -0.01 0.78 16
41 H 0.10 0.97 5.82 -2.39 -0.01 0.95 16
42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16
44 H 0.09 2.04 7.39 -2.38 -0.02 2.02 16
45 H 0.05 2.02 5.78 -2.39 -0.01 2.01 16
46 H 0.04 0.86 8.12 -2.39 -0.02 0.85 16
47 H 0.10 3.25 6.80 -2.39 -0.02 3.23 16
48 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16
49 H 0.39 19.80 7.90 -92.71 -0.73 19.07 16
50 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16
51 H 0.06 1.78 7.74 -2.39 -0.02 1.76 16
52 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
Total: -1.00 -74.94 402.91 0.73 -74.21
By element:
Atomic # 1 Polarization: 32.86 SS G_CDS: 0.19 Total: 33.05 kcal
Atomic # 6 Polarization: 18.54 SS G_CDS: 7.94 Total: 26.48 kcal
Atomic # 7 Polarization: -109.84 SS G_CDS: -7.97 Total: -117.80 kcal
Atomic # 8 Polarization: -60.02 SS G_CDS: -1.46 Total: -61.48 kcal
Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal
Total: -74.94 0.73 -74.21 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191361366.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.561 kcal
(2) G-P(sol) polarization free energy of solvation -74.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.497 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds