Wall clock time and date at job start Sat Apr 11 2020 06:25:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42898 * 113.99629 * 2 1
4 4 C 1.50703 * 109.47322 * 180.02562 * 3 2 1
5 5 O 1.21283 * 119.99351 * 359.97438 * 4 3 2
6 6 N 1.34767 * 120.00444 * 179.97438 * 4 3 2
7 7 C 1.46498 * 120.00161 * 180.02562 * 6 4 3
8 8 H 1.08998 * 109.47573 * 325.00083 * 7 6 4
9 9 C 1.50700 * 109.47372 * 205.00179 * 7 6 4
10 10 O 1.21286 * 120.00124 * 320.03576 * 9 7 6
11 11 N 1.34780 * 120.00237 * 140.03590 * 9 7 6
12 12 C 1.46500 * 119.99825 * 4.19404 * 11 9 7
13 13 C 1.46498 * 120.00084 * 184.20021 * 11 9 7
14 14 H 1.09005 * 110.77701 * 358.20777 * 13 11 9
15 15 C 1.55154 * 110.71676 * 234.97633 * 13 11 9
16 16 C 1.55134 * 101.48513 * 205.96833 * 15 13 11
17 17 N 1.47421 * 104.72174 * 37.29228 * 16 15 13
18 18 C 1.36939 * 125.65119 * 155.82024 * 17 16 15
19 19 H 1.07995 * 120.00295 * 195.41750 * 18 17 16
20 20 C 1.38814 * 119.99537 * 15.41419 * 18 17 16
21 21 N 1.31619 * 119.99959 * 29.18115 * 20 18 17
22 22 Si 1.86805 * 119.99864 * 209.17582 * 20 18 17
23 23 H 1.48504 * 109.47026 * 179.97438 * 22 20 18
24 24 H 1.48500 * 109.47378 * 300.00431 * 22 20 18
25 25 H 1.48503 * 109.46615 * 60.00578 * 22 20 18
26 26 C 1.47020 * 108.70444 * 335.55377 * 17 16 15
27 27 C 1.53004 * 109.47288 * 85.00262 * 7 6 4
28 28 C 1.52998 * 109.46897 * 57.18761 * 27 7 6
29 29 C 1.52999 * 109.47441 * 177.19075 * 27 7 6
30 30 H 1.09002 * 109.47056 * 299.99532 * 1 2 3
31 31 H 1.09001 * 109.47421 * 59.99655 * 1 2 3
32 32 H 1.09005 * 109.46883 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47439 * 60.00069 * 3 2 1
34 34 H 1.08998 * 109.47348 * 300.00331 * 3 2 1
35 35 H 0.97000 * 120.00033 * 0.02562 * 6 4 3
36 36 H 1.09004 * 109.46788 * 266.85108 * 12 11 9
37 37 H 1.08996 * 109.46795 * 26.85016 * 12 11 9
38 38 H 1.08999 * 109.46949 * 146.84705 * 12 11 9
39 39 H 1.08997 * 111.00650 * 324.20176 * 15 13 11
40 40 H 1.08997 * 111.00700 * 88.05878 * 15 13 11
41 41 H 1.08999 * 110.49670 * 278.45404 * 16 15 13
42 42 H 1.08995 * 110.34457 * 156.05753 * 16 15 13
43 43 H 0.96998 * 120.00228 * 6.15406 * 21 20 18
44 44 H 1.09006 * 109.88303 * 120.70560 * 26 17 16
45 45 H 1.09005 * 109.88529 * 241.71512 * 26 17 16
46 46 H 1.09002 * 109.46768 * 297.19511 * 27 7 6
47 47 H 1.09005 * 109.47190 * 60.00433 * 28 27 7
48 48 H 1.09005 * 109.47157 * 180.02562 * 28 27 7
49 49 H 1.08998 * 109.47674 * 300.00373 * 28 27 7
50 50 H 1.09003 * 109.47035 * 68.53035 * 29 27 7
51 51 H 1.08996 * 109.46973 * 188.53195 * 29 27 7
52 52 H 1.09004 * 109.46646 * 308.53613 * 29 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5125 1.1866 -0.0006
5 8 4.0340 0.0917 -0.0006
6 7 4.2763 2.2969 -0.0013
7 6 5.7367 2.1813 -0.0025
8 1 6.0331 1.3135 0.5867
9 6 6.3397 3.4253 0.5975
10 8 5.8670 4.5125 0.3416
11 7 7.4042 3.3298 1.4186
12 6 8.0321 2.0275 1.6553
13 6 7.9333 4.5281 2.0745
14 1 7.3758 5.4138 1.7696
15 6 9.4449 4.6989 1.7691
16 6 9.9196 5.5103 3.0031
17 7 9.1451 4.9631 4.1318
18 6 9.5149 5.0075 5.4496
19 1 9.0200 4.3742 6.1710
20 6 10.5260 5.8664 5.8581
21 7 10.7375 6.9906 5.2071
22 14 11.5864 5.4267 7.3318
23 1 12.5865 6.5005 7.5600
24 1 10.7277 5.2854 8.5351
25 1 12.2885 4.1443 7.0713
26 6 7.9067 4.3676 3.6091
27 6 6.2341 2.0158 -1.4399
28 6 5.7584 3.2001 -2.2837
29 6 7.7633 1.9653 -1.4479
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 1.6885 1.8464 0.8900
34 1 1.6885 1.8464 -0.8899
35 1 3.8592 3.1726 -0.0009
36 1 7.5973 1.5707 2.5444
37 1 7.8626 1.3807 0.7946
38 1 9.1036 2.1623 1.8031
39 1 9.9448 3.7317 1.7175
40 1 9.5963 5.2647 0.8498
41 1 9.7002 6.5698 2.8707
42 1 10.9867 5.3607 3.1674
43 1 10.1325 7.2624 4.4993
44 1 7.8647 3.3102 3.8705
45 1 7.0421 4.8863 4.0235
46 1 5.8378 1.0900 -1.8571
47 1 6.1547 4.1259 -1.8665
48 1 6.1124 3.0820 -3.3079
49 1 4.6691 3.2361 -2.2780
50 1 8.0988 1.0414 -0.9769
51 1 8.1225 2.0002 -2.4764
52 1 8.1578 2.8185 -0.8960
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267774772.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:09
Heat of formation + Delta-G solvation = -80.987696 kcal
Electronic energy + Delta-G solvation = -31619.210937 eV
Core-core repulsion = 27427.310877 eV
Total energy + Delta-G solvation = -4191.900060 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.06787 -39.68356 -38.06750 -37.54623 -36.08328 -35.12744 -33.65406 -32.32368
-29.78468 -29.25859 -28.25716 -27.41940 -27.12570 -26.51841 -25.59765 -24.24474
-22.07065 -21.11584 -20.33802 -19.78386 -18.88658 -18.16205 -17.60021 -17.24638
-16.94876 -16.69201 -16.26144 -15.88270 -15.56139 -14.91700 -14.76814 -14.54525
-14.34902 -13.92955 -13.84608 -13.51410 -13.44644 -13.24221 -13.11417 -13.01870
-12.70284 -12.66993 -12.49357 -12.20898 -12.07892 -11.88433 -11.67138 -11.53610
-11.25677 -11.14456 -11.08308 -10.80489 -10.72413 -10.54764 -10.23157 -10.15334
-10.11951 -10.03175 -9.80908 -9.58135 -9.33705 -8.55120 -8.42554 -6.99446
-6.13666 -3.16723 2.12966 2.29551 2.60849 3.00300 3.48824 3.52663
3.68973 3.70626 4.19501 4.37903 4.52450 4.57679 4.66479 4.67504
4.74148 4.84222 4.90612 4.95243 5.02484 5.14969 5.16201 5.19818
5.25803 5.31320 5.38501 5.43021 5.49198 5.54239 5.57867 5.67097
5.67413 5.75340 5.84853 5.92065 5.96095 6.05649 6.08439 6.17212
6.29273 6.36998 6.52760 6.54435 6.75895 6.89794 6.97329 7.14961
7.36134 7.74699 7.88015 8.02667 8.44928 8.97869 9.77819 10.31645
11.19080
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.016452 B = 0.002509 C = 0.002327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1701.535629 B =11159.162389 C =12030.667315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.366 6.366
3 C 0.044 3.956
4 C 0.517 3.483
5 O -0.517 6.517
6 N -0.712 5.712
7 C 0.132 3.868
8 H 0.110 0.890
9 C 0.516 3.484
10 O -0.536 6.536
11 N -0.592 5.592
12 C 0.060 3.940
13 C 0.127 3.873
14 H 0.106 0.894
15 C -0.145 4.145
16 C 0.146 3.854
17 N -0.600 5.600
18 C -0.338 4.338
19 H 0.065 0.935
20 C -0.024 4.024
21 N -0.914 5.914
22 Si 1.063 2.937
23 H -0.285 1.285
24 H -0.293 1.293
25 H -0.294 1.294
26 C 0.129 3.871
27 C -0.099 4.099
28 C -0.150 4.150
29 C -0.157 4.157
30 H 0.045 0.955
31 H 0.044 0.956
32 H 0.092 0.908
33 H 0.083 0.917
34 H 0.082 0.918
35 H 0.409 0.591
36 H 0.061 0.939
37 H 0.078 0.922
38 H 0.083 0.917
39 H 0.071 0.929
40 H 0.066 0.934
41 H 0.028 0.972
42 H 0.055 0.945
43 H 0.269 0.731
44 H 0.030 0.970
45 H 0.025 0.975
46 H 0.086 0.914
47 H 0.069 0.931
48 H 0.055 0.945
49 H 0.054 0.946
50 H 0.063 0.937
51 H 0.064 0.936
52 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.152 -11.404 -15.774 24.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.284 6.284
3 C -0.036 4.036
4 C 0.303 3.697
5 O -0.391 6.391
6 N -0.367 5.367
7 C 0.024 3.976
8 H 0.128 0.872
9 C 0.303 3.697
10 O -0.414 6.414
11 N -0.324 5.324
12 C -0.082 4.082
13 C 0.024 3.976
14 H 0.124 0.876
15 C -0.184 4.184
16 C 0.020 3.980
17 N -0.328 5.328
18 C -0.466 4.466
19 H 0.083 0.917
20 C -0.226 4.226
21 N -0.555 5.555
22 Si 0.893 3.107
23 H -0.211 1.211
24 H -0.220 1.220
25 H -0.221 1.221
26 C 0.003 3.997
27 C -0.119 4.119
28 C -0.207 4.207
29 C -0.215 4.215
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.110 0.890
33 H 0.101 0.899
34 H 0.100 0.900
35 H 0.246 0.754
36 H 0.079 0.921
37 H 0.096 0.904
38 H 0.102 0.898
39 H 0.089 0.911
40 H 0.085 0.915
41 H 0.046 0.954
42 H 0.074 0.926
43 H 0.080 0.920
44 H 0.048 0.952
45 H 0.043 0.957
46 H 0.105 0.895
47 H 0.088 0.912
48 H 0.074 0.926
49 H 0.073 0.927
50 H 0.082 0.918
51 H 0.083 0.917
52 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -13.584 -11.329 -14.865 23.105
hybrid contribution -1.840 0.164 -0.739 1.989
sum -15.424 -11.165 -15.604 24.618
Atomic orbital electron populations
1.22855 0.80192 1.03413 1.00235 1.88012 1.19916 1.25024 1.95456
1.22202 0.91237 0.87166 1.02985 1.20241 0.88748 0.84329 0.76419
1.90739 1.74493 1.26309 1.47592 1.45631 1.05497 1.09628 1.75952
1.21026 0.80707 0.97694 0.98152 0.87242 1.20376 0.80375 0.90377
0.78585 1.90678 1.61681 1.28772 1.60226 1.47819 1.30296 1.09352
1.44946 1.22113 1.00095 0.84060 1.01956 1.22237 0.94988 0.87125
0.93245 0.87639 1.23238 0.94581 1.01197 0.99364 1.21558 0.96493
0.94921 0.85017 1.44517 1.16766 1.68805 1.02691 1.19719 1.21832
1.21775 0.83252 0.91669 1.25743 1.00136 0.92760 1.03962 1.70787
1.41804 1.18214 1.24674 0.83553 0.76653 0.75568 0.74962 1.21068
1.22006 1.22089 1.21543 0.90724 0.97307 0.90155 1.21412 0.96598
1.00628 0.93218 1.21879 1.01278 0.98355 0.99170 1.22056 0.94130
1.02435 1.02882 0.93673 0.93744 0.88994 0.89916 0.89992 0.75420
0.92053 0.90362 0.89808 0.91054 0.91500 0.95381 0.92644 0.92002
0.95188 0.95703 0.89542 0.91210 0.92626 0.92706 0.91834 0.91660
0.91812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 11.01 101.05 1.11 1.29 16
2 O -0.37 -3.79 10.24 -55.14 -0.56 -4.35 16
3 C 0.04 0.36 6.42 36.01 0.23 0.59 16
4 C 0.52 5.80 7.87 -10.99 -0.09 5.71 16
5 O -0.52 -7.82 16.16 -14.36 -0.23 -8.05 16
6 N -0.71 -7.32 4.17 -54.93 -0.23 -7.55 16
7 C 0.13 1.50 1.78 -69.08 -0.12 1.38 16
8 H 0.11 1.29 5.66 -51.93 -0.29 1.00 16
9 C 0.52 7.03 5.10 -10.98 -0.06 6.98 16
10 O -0.54 -8.54 14.07 5.55 0.08 -8.46 16
11 N -0.59 -8.35 2.47 -171.84 -0.43 -8.77 16
12 C 0.06 0.71 8.19 59.85 0.49 1.20 16
13 C 0.13 2.21 3.35 -66.10 -0.22 1.98 16
14 H 0.11 1.97 7.01 -51.93 -0.36 1.61 16
15 C -0.14 -2.51 6.63 -24.46 -0.16 -2.67 16
16 C 0.15 3.31 5.31 -2.41 -0.01 3.30 16
17 N -0.60 -15.03 3.30 -169.93 -0.56 -15.60 16
18 C -0.34 -9.50 10.01 -15.06 -0.15 -9.65 16
19 H 0.07 1.83 7.98 -52.49 -0.42 1.41 16
20 C -0.02 -0.69 5.06 -17.43 -0.09 -0.77 16
21 N -0.91 -27.45 12.90 55.49 0.72 -26.73 16
22 Si 1.06 25.17 30.01 -169.99 -5.10 20.07 16
23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
25 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16
26 C 0.13 2.70 6.88 -3.07 -0.02 2.68 16
27 C -0.10 -0.99 2.93 -90.62 -0.27 -1.26 16
28 C -0.15 -1.48 8.62 37.16 0.32 -1.16 16
29 C -0.16 -1.46 7.83 37.16 0.29 -1.17 16
30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16
31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.41 3.72 8.04 -40.82 -0.33 3.40 16
36 H 0.06 0.73 7.76 -51.93 -0.40 0.32 16
37 H 0.08 0.74 3.65 -51.93 -0.19 0.55 16
38 H 0.08 1.01 6.07 -51.93 -0.32 0.69 16
39 H 0.07 1.15 6.08 -51.93 -0.32 0.83 16
40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.03 0.69 6.85 -51.93 -0.36 0.33 16
42 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16
43 H 0.27 8.10 6.12 -40.82 -0.25 7.85 16
44 H 0.03 0.61 6.86 -51.93 -0.36 0.26 16
45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
46 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16
47 H 0.07 0.83 6.33 -51.93 -0.33 0.50 16
48 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
49 H 0.05 0.51 7.53 -51.93 -0.39 0.12 16
50 H 0.06 0.52 6.83 -51.93 -0.35 0.17 16
51 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16
52 H 0.06 0.68 6.04 -51.93 -0.31 0.37 16
LS Contribution 399.74 15.07 6.02 6.02
Total: -1.00 -34.99 399.74 -7.45 -42.44
By element:
Atomic # 1 Polarization: 10.95 SS G_CDS: -8.41 Total: 2.54 kcal
Atomic # 6 Polarization: 7.17 SS G_CDS: 1.26 Total: 8.43 kcal
Atomic # 7 Polarization: -58.14 SS G_CDS: -0.50 Total: -58.64 kcal
Atomic # 8 Polarization: -20.14 SS G_CDS: -0.72 Total: -20.86 kcal
Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.07 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -34.99 -7.45 -42.44 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267774772.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.546 kcal
(2) G-P(sol) polarization free energy of solvation -34.994 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.988 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds