Wall clock time and date at job start Sat Apr 11 2020 06:25:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42898 * 113.99629 * 2 1
4 4 C 1.50703 * 109.47322 * 180.02562 * 3 2 1
5 5 O 1.21283 * 119.99351 * 359.97438 * 4 3 2
6 6 N 1.34767 * 120.00444 * 179.97438 * 4 3 2
7 7 C 1.46498 * 120.00161 * 180.02562 * 6 4 3
8 8 H 1.08998 * 109.47573 * 325.00083 * 7 6 4
9 9 C 1.50700 * 109.47372 * 205.00179 * 7 6 4
10 10 O 1.21286 * 120.00124 * 320.03576 * 9 7 6
11 11 N 1.34780 * 120.00237 * 140.03590 * 9 7 6
12 12 C 1.46500 * 119.99825 * 4.19404 * 11 9 7
13 13 C 1.46498 * 120.00084 * 184.20021 * 11 9 7
14 14 H 1.09005 * 110.77701 * 358.20777 * 13 11 9
15 15 C 1.55154 * 110.71676 * 234.97633 * 13 11 9
16 16 C 1.55134 * 101.48513 * 205.96833 * 15 13 11
17 17 N 1.47421 * 104.72174 * 37.29228 * 16 15 13
18 18 C 1.36939 * 125.65119 * 155.82024 * 17 16 15
19 19 H 1.07995 * 120.00295 * 195.41750 * 18 17 16
20 20 C 1.38814 * 119.99537 * 15.41419 * 18 17 16
21 21 N 1.31619 * 119.99959 * 29.18115 * 20 18 17
22 22 Si 1.86805 * 119.99864 * 209.17582 * 20 18 17
23 23 H 1.48504 * 109.47026 * 179.97438 * 22 20 18
24 24 H 1.48500 * 109.47378 * 300.00431 * 22 20 18
25 25 H 1.48503 * 109.46615 * 60.00578 * 22 20 18
26 26 C 1.47020 * 108.70444 * 335.55377 * 17 16 15
27 27 C 1.53004 * 109.47288 * 85.00262 * 7 6 4
28 28 C 1.52998 * 109.46897 * 57.18761 * 27 7 6
29 29 C 1.52999 * 109.47441 * 177.19075 * 27 7 6
30 30 H 1.09002 * 109.47056 * 299.99532 * 1 2 3
31 31 H 1.09001 * 109.47421 * 59.99655 * 1 2 3
32 32 H 1.09005 * 109.46883 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47439 * 60.00069 * 3 2 1
34 34 H 1.08998 * 109.47348 * 300.00331 * 3 2 1
35 35 H 0.97000 * 120.00033 * 0.02562 * 6 4 3
36 36 H 1.09004 * 109.46788 * 266.85108 * 12 11 9
37 37 H 1.08996 * 109.46795 * 26.85016 * 12 11 9
38 38 H 1.08999 * 109.46949 * 146.84705 * 12 11 9
39 39 H 1.08997 * 111.00650 * 324.20176 * 15 13 11
40 40 H 1.08997 * 111.00700 * 88.05878 * 15 13 11
41 41 H 1.08999 * 110.49670 * 278.45404 * 16 15 13
42 42 H 1.08995 * 110.34457 * 156.05753 * 16 15 13
43 43 H 0.96998 * 120.00228 * 6.15406 * 21 20 18
44 44 H 1.09006 * 109.88303 * 120.70560 * 26 17 16
45 45 H 1.09005 * 109.88529 * 241.71512 * 26 17 16
46 46 H 1.09002 * 109.46768 * 297.19511 * 27 7 6
47 47 H 1.09005 * 109.47190 * 60.00433 * 28 27 7
48 48 H 1.09005 * 109.47157 * 180.02562 * 28 27 7
49 49 H 1.08998 * 109.47674 * 300.00373 * 28 27 7
50 50 H 1.09003 * 109.47035 * 68.53035 * 29 27 7
51 51 H 1.08996 * 109.46973 * 188.53195 * 29 27 7
52 52 H 1.09004 * 109.46646 * 308.53613 * 29 27 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5125 1.1866 -0.0006
5 8 4.0340 0.0917 -0.0006
6 7 4.2763 2.2969 -0.0013
7 6 5.7367 2.1813 -0.0025
8 1 6.0331 1.3135 0.5867
9 6 6.3397 3.4253 0.5975
10 8 5.8670 4.5125 0.3416
11 7 7.4042 3.3298 1.4186
12 6 8.0321 2.0275 1.6553
13 6 7.9333 4.5281 2.0745
14 1 7.3758 5.4138 1.7696
15 6 9.4449 4.6989 1.7691
16 6 9.9196 5.5103 3.0031
17 7 9.1451 4.9631 4.1318
18 6 9.5149 5.0075 5.4496
19 1 9.0200 4.3742 6.1710
20 6 10.5260 5.8664 5.8581
21 7 10.7375 6.9906 5.2071
22 14 11.5864 5.4267 7.3318
23 1 12.5865 6.5005 7.5600
24 1 10.7277 5.2854 8.5351
25 1 12.2885 4.1443 7.0713
26 6 7.9067 4.3676 3.6091
27 6 6.2341 2.0158 -1.4399
28 6 5.7584 3.2001 -2.2837
29 6 7.7633 1.9653 -1.4479
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 1.6885 1.8464 0.8900
34 1 1.6885 1.8464 -0.8899
35 1 3.8592 3.1726 -0.0009
36 1 7.5973 1.5707 2.5444
37 1 7.8626 1.3807 0.7946
38 1 9.1036 2.1623 1.8031
39 1 9.9448 3.7317 1.7175
40 1 9.5963 5.2647 0.8498
41 1 9.7002 6.5698 2.8707
42 1 10.9867 5.3607 3.1674
43 1 10.1325 7.2624 4.4993
44 1 7.8647 3.3102 3.8705
45 1 7.0421 4.8863 4.0235
46 1 5.8378 1.0900 -1.8571
47 1 6.1547 4.1259 -1.8665
48 1 6.1124 3.0820 -3.3079
49 1 4.6691 3.2361 -2.2780
50 1 8.0988 1.0414 -0.9769
51 1 8.1225 2.0002 -2.4764
52 1 8.1578 2.8185 -0.8960
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267774772.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:07
Heat of formation + Delta-G solvation = -104.767462 kcal
Electronic energy + Delta-G solvation = -31620.242105 eV
Core-core repulsion = 27427.310877 eV
Total energy + Delta-G solvation = -4192.931228 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 2.01 seconds
Orbital eigenvalues (eV)
-42.10450 -40.68199 -39.38878 -38.42855 -37.04702 -36.56304 -34.57252 -34.15267
-31.16734 -30.43420 -29.63658 -28.26383 -28.06181 -27.51432 -26.52782 -25.99317
-23.13763 -22.22641 -22.09144 -20.94578 -19.93530 -19.62276 -19.12734 -18.19812
-17.91004 -17.39508 -17.10154 -16.94860 -16.55730 -16.20556 -15.92540 -15.70385
-15.53662 -15.38676 -15.16466 -14.94565 -14.69551 -14.37962 -14.17136 -14.14282
-13.87755 -13.55258 -13.47567 -13.22900 -13.17449 -12.91947 -12.63328 -12.57106
-12.52583 -12.46169 -12.37329 -12.33407 -12.08517 -11.92110 -11.90123 -11.70505
-11.62210 -11.04362 -10.87744 -10.78062 -10.54703 -10.25925 -9.76820 -9.07967
-8.36589 -5.36574 1.15177 1.46230 1.56749 1.58369 1.65476 1.84727
2.00264 2.63425 3.06612 3.14409 3.18429 3.51943 3.59735 3.65758
3.72515 3.80212 3.84439 4.04443 4.08736 4.11180 4.17187 4.23142
4.31750 4.33743 4.39127 4.50535 4.50976 4.56826 4.58438 4.72320
4.74605 4.80338 4.87335 4.89874 4.90270 4.91659 4.94566 5.01028
5.09877 5.12498 5.20110 5.31326 5.35987 5.39983 5.63255 5.98560
6.21494 6.27284 6.36835 6.83602 6.89902 7.05488 7.65958 8.22658
8.95343
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.016452 B = 0.002509 C = 0.002327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1701.535629 B =11159.162389 C =12030.667315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.404 6.404
3 C 0.045 3.955
4 C 0.516 3.484
5 O -0.561 6.561
6 N -0.705 5.705
7 C 0.137 3.863
8 H 0.108 0.892
9 C 0.520 3.480
10 O -0.559 6.559
11 N -0.592 5.592
12 C 0.057 3.943
13 C 0.146 3.854
14 H 0.092 0.908
15 C -0.124 4.124
16 C 0.148 3.852
17 N -0.620 5.620
18 C -0.349 4.349
19 H 0.060 0.940
20 C -0.076 4.076
21 N -0.941 5.941
22 Si 1.116 2.884
23 H -0.291 1.291
24 H -0.276 1.276
25 H -0.278 1.278
26 C 0.129 3.871
27 C -0.094 4.094
28 C -0.145 4.145
29 C -0.157 4.157
30 H 0.056 0.944
31 H 0.061 0.939
32 H 0.095 0.905
33 H 0.104 0.896
34 H 0.112 0.888
35 H 0.416 0.584
36 H 0.061 0.939
37 H 0.103 0.897
38 H 0.084 0.916
39 H 0.090 0.910
40 H 0.089 0.911
41 H 0.005 0.995
42 H 0.030 0.970
43 H 0.254 0.746
44 H 0.040 0.960
45 H 0.006 0.994
46 H 0.087 0.913
47 H 0.049 0.951
48 H 0.068 0.932
49 H 0.058 0.942
50 H 0.075 0.925
51 H 0.076 0.924
52 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.945 -12.950 -16.851 26.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.323 6.323
3 C -0.034 4.034
4 C 0.303 3.697
5 O -0.438 6.438
6 N -0.361 5.361
7 C 0.029 3.971
8 H 0.126 0.874
9 C 0.308 3.692
10 O -0.437 6.437
11 N -0.323 5.323
12 C -0.084 4.084
13 C 0.041 3.959
14 H 0.110 0.890
15 C -0.162 4.162
16 C 0.023 3.977
17 N -0.348 5.348
18 C -0.477 4.477
19 H 0.078 0.922
20 C -0.272 4.272
21 N -0.584 5.584
22 Si 0.940 3.060
23 H -0.217 1.217
24 H -0.202 1.202
25 H -0.204 1.204
26 C 0.003 3.997
27 C -0.114 4.114
28 C -0.203 4.203
29 C -0.214 4.214
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.114 0.886
33 H 0.122 0.878
34 H 0.130 0.870
35 H 0.254 0.746
36 H 0.079 0.921
37 H 0.121 0.879
38 H 0.103 0.897
39 H 0.109 0.891
40 H 0.107 0.893
41 H 0.023 0.977
42 H 0.048 0.952
43 H 0.065 0.935
44 H 0.058 0.942
45 H 0.025 0.975
46 H 0.105 0.895
47 H 0.068 0.932
48 H 0.087 0.913
49 H 0.077 0.923
50 H 0.093 0.907
51 H 0.095 0.905
52 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -14.422 -12.889 -15.966 25.080
hybrid contribution -1.701 0.647 -0.425 1.869
sum -16.123 -12.242 -16.391 26.048
Atomic orbital electron populations
1.23043 0.78230 1.04237 1.01627 1.87955 1.22143 1.26377 1.95800
1.22334 0.88725 0.86990 1.05389 1.20848 0.90121 0.83571 0.75118
1.90715 1.75483 1.27832 1.49774 1.45618 1.05071 1.09962 1.75403
1.20989 0.81359 0.95948 0.98836 0.87390 1.20753 0.79729 0.90816
0.77924 1.90674 1.62221 1.29914 1.60912 1.47764 1.30671 1.09093
1.44776 1.22291 0.99871 0.83069 1.03193 1.21756 0.94992 0.88234
0.90905 0.88986 1.23090 0.94209 1.01456 0.97488 1.21469 0.94953
0.94547 0.86773 1.44767 1.18712 1.68819 1.02506 1.19980 1.21878
1.21091 0.84758 0.92211 1.27170 1.01433 0.92259 1.06336 1.70906
1.42208 1.19684 1.25587 0.82853 0.75132 0.75543 0.72478 1.21744
1.20170 1.20375 1.21617 0.88419 0.97000 0.92639 1.21398 0.97272
1.00603 0.92089 1.21836 1.01533 0.97177 0.99725 1.22061 0.93295
1.02395 1.03665 0.92501 0.92060 0.88608 0.87783 0.87017 0.74616
0.92061 0.87853 0.89728 0.89133 0.89285 0.97717 0.95176 0.93526
0.94168 0.97549 0.89461 0.93226 0.91299 0.92267 0.90651 0.90466
0.93111
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.25 11.01 113.37 1.25 1.49 16
2 O -0.40 -7.74 10.24 -129.94 -1.33 -9.07 16
3 C 0.04 0.63 6.42 71.24 0.46 1.09 16
4 C 0.52 10.82 7.87 87.66 0.69 11.51 16
5 O -0.56 -16.50 16.16 16.00 0.26 -16.24 16
6 N -0.71 -13.37 4.17 -446.10 -1.86 -15.23 16
7 C 0.14 2.88 1.78 44.25 0.08 2.96 16
8 H 0.11 2.35 5.66 -2.39 -0.01 2.34 16
9 C 0.52 13.48 5.10 87.66 0.45 13.93 16
10 O -0.56 -17.30 14.07 -3.05 -0.04 -17.34 16
11 N -0.59 -15.85 2.47 -815.96 -2.02 -17.87 16
12 C 0.06 1.23 8.19 127.77 1.05 2.27 16
13 C 0.15 4.97 3.35 46.18 0.15 5.13 16
14 H 0.09 3.45 7.01 -2.38 -0.02 3.43 16
15 C -0.12 -4.17 6.63 32.06 0.21 -3.96 16
16 C 0.15 6.89 5.31 86.93 0.46 7.36 16
17 N -0.62 -31.68 3.30 -691.55 -2.28 -33.97 16
18 C -0.35 -19.90 10.01 84.03 0.84 -19.06 16
19 H 0.06 3.40 7.98 -2.91 -0.02 3.37 16
20 C -0.08 -4.36 5.06 84.86 0.43 -3.94 16
21 N -0.94 -58.09 12.90 21.65 0.28 -57.81 16
22 Si 1.12 51.01 30.01 68.60 2.06 53.06 16
23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16
25 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
26 C 0.13 5.44 6.88 86.73 0.60 6.04 16
27 C -0.09 -1.70 2.93 -10.79 -0.03 -1.73 16
28 C -0.15 -2.61 8.62 71.98 0.62 -1.99 16
29 C -0.16 -2.51 7.83 71.98 0.56 -1.94 16
30 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16
31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16
32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16
33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16
35 H 0.42 6.86 8.04 -92.71 -0.74 6.12 16
36 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16
37 H 0.10 1.70 3.65 -2.39 -0.01 1.69 16
38 H 0.08 1.83 6.07 -2.39 -0.01 1.81 16
39 H 0.09 2.73 6.08 -2.39 -0.01 2.72 16
40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16
41 H 0.01 0.26 6.85 -2.39 -0.02 0.24 16
42 H 0.03 1.53 7.90 -2.39 -0.02 1.51 16
43 H 0.25 16.00 6.12 -92.71 -0.57 15.43 16
44 H 0.04 1.62 6.86 -2.38 -0.02 1.60 16
45 H 0.01 0.29 8.14 -2.38 -0.02 0.28 16
46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
47 H 0.05 1.11 6.33 -2.38 -0.02 1.10 16
48 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16
49 H 0.06 0.99 7.53 -2.39 -0.02 0.97 16
50 H 0.07 1.02 6.83 -2.39 -0.02 1.00 16
51 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16
52 H 0.05 0.96 6.04 -2.39 -0.01 0.95 16
Total: -1.00 -77.96 399.74 3.27 -74.69
By element:
Atomic # 1 Polarization: 20.22 SS G_CDS: 0.39 Total: 20.61 kcal
Atomic # 6 Polarization: 11.35 SS G_CDS: 7.82 Total: 19.16 kcal
Atomic # 7 Polarization: -118.99 SS G_CDS: -5.88 Total: -124.88 kcal
Atomic # 8 Polarization: -41.54 SS G_CDS: -1.11 Total: -42.65 kcal
Atomic # 14 Polarization: 51.01 SS G_CDS: 2.06 Total: 53.06 kcal
Total: -77.96 3.27 -74.69 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267774772.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.077 kcal
(2) G-P(sol) polarization free energy of solvation -77.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.01 seconds