Wall clock time and date at job start Sat Apr 11 2020 06:25:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47417 * 2 1
4 4 C 1.53005 * 109.47314 * 120.00113 * 2 1 3
5 5 H 1.08996 * 109.47522 * 180.49092 * 4 2 1
6 6 C 1.53000 * 109.46983 * 300.49575 * 4 2 1
7 7 N 1.46495 * 109.47115 * 175.00095 * 6 4 2
8 8 C 1.34776 * 119.99764 * 179.97438 * 7 6 4
9 9 O 1.21280 * 120.00429 * 0.02562 * 8 7 6
10 10 C 1.50709 * 119.99831 * 179.97438 * 8 7 6
11 11 C 1.52998 * 110.45587 * 61.15050 * 10 8 7
12 12 C 1.54510 * 110.51045 * 183.90449 * 10 8 7
13 13 C 1.54485 * 104.06130 * 118.64222 * 12 10 8
14 14 O 1.44420 * 104.80315 * 336.02201 * 13 12 10
15 15 C 1.44425 * 105.27774 * 40.51284 * 14 13 12
16 16 N 1.46904 * 109.47077 * 60.48942 * 4 2 1
17 17 C 1.46901 * 110.99772 * 86.25880 * 16 4 2
18 18 C 1.50695 * 109.47040 * 176.17015 * 17 16 4
19 19 O 1.21291 * 120.00295 * 0.02562 * 18 17 16
20 20 N 1.34785 * 120.00143 * 180.02562 * 18 17 16
21 21 C 1.37093 * 119.99874 * 179.97438 * 20 18 17
22 22 H 1.08001 * 120.00400 * 0.02562 * 21 20 18
23 23 C 1.38948 * 119.99820 * 179.97438 * 21 20 18
24 24 N 1.31415 * 120.00270 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 120.00212 * 180.02562 * 23 21 20
26 26 H 1.48504 * 109.47173 * 359.97438 * 25 23 21
27 27 H 1.48492 * 109.47503 * 120.00137 * 25 23 21
28 28 H 1.48503 * 109.46937 * 240.00103 * 25 23 21
29 29 H 1.09000 * 109.47350 * 59.99891 * 1 2 3
30 30 H 1.09001 * 109.47033 * 299.99984 * 1 2 3
31 31 H 1.09009 * 109.47255 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47033 * 240.00016 * 2 1 3
33 33 H 1.09006 * 109.47203 * 54.03648 * 3 2 1
34 34 H 1.08993 * 109.47625 * 174.03874 * 3 2 1
35 35 H 1.09005 * 109.46912 * 294.03765 * 3 2 1
36 36 H 1.09005 * 109.46799 * 295.00059 * 6 4 2
37 37 H 1.08994 * 109.47456 * 54.99194 * 6 4 2
38 38 H 0.97003 * 119.99944 * 359.97438 * 7 6 4
39 39 H 1.08997 * 109.46872 * 60.69967 * 11 10 8
40 40 H 1.08999 * 109.46922 * 180.69842 * 11 10 8
41 41 H 1.08993 * 109.47048 * 300.70167 * 11 10 8
42 42 H 1.08993 * 110.51037 * 237.28881 * 12 10 8
43 43 H 1.09002 * 110.50807 * 359.97438 * 12 10 8
44 44 H 1.08999 * 110.37371 * 217.18773 * 13 12 10
45 45 H 1.09002 * 110.36805 * 94.85440 * 13 12 10
46 46 H 1.08999 * 110.37301 * 200.65988 * 15 14 13
47 47 H 1.08991 * 110.37681 * 78.31467 * 15 14 13
48 48 H 1.00894 * 110.99956 * 210.21754 * 16 4 2
49 49 H 1.09003 * 109.47576 * 296.17226 * 17 16 4
50 50 H 1.09001 * 109.46980 * 56.17097 * 17 16 4
51 51 H 0.96993 * 119.99441 * 359.97438 * 20 18 17
52 52 H 0.97000 * 120.00418 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2493
5 1 3.1300 -0.7137 1.2537
6 6 1.5199 -0.0073 2.4985
7 7 1.9080 -0.7646 3.6910
8 6 1.5567 -0.3215 4.9144
9 8 0.9189 0.7038 5.0281
10 6 1.9554 -1.1009 6.1412
11 6 3.4792 -1.1906 6.2458
12 6 1.3598 -0.4533 7.4113
13 6 0.4456 -1.5512 7.9990
14 8 0.1102 -2.3931 6.8745
15 6 1.3307 -2.5135 6.1118
16 7 1.5601 -2.1097 1.2433
17 6 2.4689 -2.9776 0.4827
18 6 1.9965 -4.4055 0.5773
19 8 1.0003 -4.6737 1.2151
20 7 2.6808 -5.3846 -0.0470
21 6 2.2513 -6.6836 0.0395
22 1 1.3642 -6.9224 0.6075
23 6 2.9565 -7.6928 -0.6044
24 7 4.0355 -7.4023 -1.2960
25 14 2.3708 -9.4628 -0.4872
26 1 1.1420 -9.5236 0.3444
27 1 2.0740 -9.9772 -1.8482
28 1 3.4313 -10.2948 0.1360
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.5921 1.9862 0.8318
34 1 3.1247 1.4443 0.1067
35 1 1.7665 1.9245 -0.9386
36 1 1.9473 0.9942 2.5490
37 1 0.4333 0.0635 2.4506
38 1 2.4177 -1.5848 3.6000
39 1 3.8977 -0.1872 6.3243
40 1 3.7493 -1.7672 7.1305
41 1 3.8761 -1.6813 5.3571
42 1 2.1507 -0.1971 8.1161
43 1 0.7773 0.4308 7.1519
44 1 -0.4553 -1.1080 8.4232
45 1 0.9802 -2.1247 8.7563
46 1 1.1097 -2.8093 5.0862
47 1 2.0010 -3.2345 6.5796
48 1 1.4348 -2.4530 2.1838
49 1 2.4790 -2.6667 -0.5620
50 1 3.4751 -2.8998 0.8945
51 1 3.4772 -5.1700 -0.5574
52 1 4.5280 -8.1069 -1.7452
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482559932.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:29
Heat of formation + Delta-G solvation = -127.651954 kcal
Electronic energy + Delta-G solvation = -31286.674879 eV
Core-core repulsion = 27092.751305 eV
Total energy + Delta-G solvation = -4193.923574 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.92646 -39.16154 -38.31412 -37.55282 -34.51582 -34.12617 -33.81482 -33.18510
-31.25620 -30.10444 -28.55605 -27.14359 -26.72858 -26.11744 -24.31556 -23.62558
-23.17804 -22.06888 -20.04604 -19.30075 -18.99249 -17.97216 -17.56526 -16.65219
-16.39916 -16.11905 -15.79894 -15.52449 -15.30265 -15.09910 -14.58589 -14.47583
-14.34188 -13.98036 -13.83361 -13.74243 -13.49094 -13.37696 -13.09206 -13.02871
-12.61702 -12.42197 -12.14231 -12.05070 -11.92351 -11.78866 -11.67533 -11.61810
-11.51735 -11.29873 -11.12118 -10.96217 -10.92659 -10.82545 -10.42544 -10.37079
-10.26016 -10.18775 -9.73043 -9.56273 -9.20872 -8.49389 -8.17326 -8.00714
-6.46031 -3.86884 2.44334 2.92010 3.13517 3.24829 3.32004 3.74518
3.84494 4.00384 4.04107 4.23673 4.33838 4.54462 4.60502 4.70973
4.83497 4.86975 4.96179 4.99297 5.12361 5.20062 5.20498 5.24657
5.26374 5.29045 5.40097 5.44411 5.50017 5.53407 5.59108 5.62377
5.65307 5.69823 5.72790 5.83903 5.88688 5.91007 5.95798 6.01085
6.11352 6.21198 6.26037 6.39419 6.53971 6.59529 7.11344 7.25211
7.51645 7.53948 8.01841 8.01975 8.56047 9.13650 9.49273 10.00114
10.71571
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.008981 B = 0.003137 C = 0.002498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3116.866709 B = 8923.330824 C =11206.931100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.081 4.081
3 C -0.151 4.151
4 C 0.080 3.920
5 H 0.049 0.951
6 C 0.114 3.886
7 N -0.728 5.728
8 C 0.534 3.466
9 O -0.535 6.535
10 C -0.118 4.118
11 C -0.136 4.136
12 C -0.143 4.143
13 C 0.044 3.956
14 O -0.366 6.366
15 C 0.055 3.945
16 N -0.661 5.661
17 C 0.049 3.951
18 C 0.438 3.562
19 O -0.582 6.582
20 N -0.562 5.562
21 C -0.299 4.299
22 H 0.104 0.896
23 C 0.023 3.977
24 N -0.901 5.901
25 Si 0.929 3.071
26 H -0.267 1.267
27 H -0.281 1.281
28 H -0.282 1.282
29 H 0.045 0.955
30 H 0.050 0.950
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.056 0.944
34 H 0.052 0.948
35 H 0.056 0.944
36 H 0.075 0.925
37 H 0.084 0.916
38 H 0.398 0.602
39 H 0.066 0.934
40 H 0.072 0.928
41 H 0.065 0.935
42 H 0.082 0.918
43 H 0.099 0.901
44 H 0.093 0.907
45 H 0.060 0.940
46 H 0.099 0.901
47 H 0.075 0.925
48 H 0.348 0.652
49 H 0.088 0.912
50 H 0.043 0.957
51 H 0.392 0.608
52 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.138 16.276 11.411 19.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.100 4.100
3 C -0.209 4.209
4 C -0.031 4.031
5 H 0.067 0.933
6 C -0.010 4.010
7 N -0.381 5.381
8 C 0.319 3.681
9 O -0.411 6.411
10 C -0.122 4.122
11 C -0.193 4.193
12 C -0.181 4.181
13 C -0.032 4.032
14 O -0.284 6.284
15 C -0.022 4.022
16 N -0.296 5.296
17 C -0.084 4.084
18 C 0.223 3.777
19 O -0.467 6.467
20 N -0.198 5.198
21 C -0.429 4.429
22 H 0.122 0.878
23 C -0.179 4.179
24 N -0.542 5.542
25 Si 0.756 3.244
26 H -0.192 1.192
27 H -0.207 1.207
28 H -0.208 1.208
29 H 0.064 0.936
30 H 0.069 0.931
31 H 0.094 0.906
32 H 0.093 0.907
33 H 0.075 0.925
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.093 0.907
37 H 0.102 0.898
38 H 0.233 0.767
39 H 0.085 0.915
40 H 0.091 0.909
41 H 0.084 0.916
42 H 0.101 0.899
43 H 0.118 0.882
44 H 0.111 0.889
45 H 0.078 0.922
46 H 0.117 0.883
47 H 0.093 0.907
48 H 0.169 0.831
49 H 0.106 0.894
50 H 0.061 0.939
51 H 0.225 0.775
52 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.485 16.700 11.237 20.135
hybrid contribution 1.643 -1.208 0.110 2.042
sum 2.128 15.492 11.348 19.321
Atomic orbital electron populations
1.21803 0.94340 1.03347 1.00541 1.21025 0.97106 0.94795 0.97096
1.21932 1.00749 0.96280 1.01964 1.21858 0.97246 0.89555 0.94407
0.93274 1.21765 1.01814 0.94988 0.82410 1.46031 1.57614 1.28347
1.06117 1.20112 0.78651 0.85166 0.84139 1.90661 1.39286 1.24848
1.86299 1.22203 0.98244 0.97122 0.94635 1.21813 0.91277 1.03019
1.03209 1.23061 0.99965 1.00479 0.94547 1.23449 0.99426 0.90789
0.89585 1.89203 1.31111 1.70100 1.38021 1.23579 0.86823 0.93433
0.98358 1.60095 1.48767 0.99809 1.20901 1.21773 0.93625 0.93017
0.99936 1.19793 0.86582 0.86069 0.85207 1.90541 1.27282 1.83218
1.45611 1.41867 1.26025 1.06565 1.45387 1.19754 1.11010 0.81934
1.30162 0.87828 1.25263 0.95783 1.00489 0.96358 1.69617 1.17248
1.34277 1.33091 0.85811 0.78810 0.81714 0.78097 1.19169 1.20717
1.20761 0.93554 0.93091 0.90619 0.90651 0.92511 0.92887 0.92468
0.90682 0.89799 0.76657 0.91536 0.90877 0.91637 0.89934 0.88249
0.88874 0.92164 0.88314 0.90729 0.83068 0.89413 0.93916 0.77489
0.91899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 8.68 37.16 0.32 -1.37 16
2 C -0.08 -0.88 2.85 -90.62 -0.26 -1.13 16
3 C -0.15 -1.35 8.68 37.15 0.32 -1.03 16
4 C 0.08 0.91 2.02 -67.71 -0.14 0.77 16
5 H 0.05 0.52 7.72 -51.93 -0.40 0.12 16
6 C 0.11 1.29 4.59 -4.04 -0.02 1.27 16
7 N -0.73 -8.10 4.60 -60.29 -0.28 -8.38 16
8 C 0.53 6.65 6.49 -10.98 -0.07 6.57 16
9 O -0.53 -8.38 15.29 5.56 0.08 -8.30 16
10 C -0.12 -1.17 0.88 -154.09 -0.14 -1.31 16
11 C -0.14 -0.99 8.22 37.16 0.31 -0.69 16
12 C -0.14 -1.34 6.32 -25.16 -0.16 -1.50 16
13 C 0.04 0.42 7.63 37.94 0.29 0.71 16
14 O -0.37 -4.82 11.65 -35.23 -0.41 -5.23 16
15 C 0.06 0.61 6.70 37.94 0.25 0.86 16
16 N -0.66 -9.70 5.25 -107.99 -0.57 -10.27 16
17 C 0.05 0.80 6.01 -4.98 -0.03 0.77 16
18 C 0.44 9.81 7.81 -10.98 -0.09 9.73 16
19 O -0.58 -15.15 15.69 5.55 0.09 -15.07 16
20 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16
21 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16
22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16
23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16
25 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16
26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16
29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.05 0.58 6.31 -51.93 -0.33 0.26 16
31 H 0.07 1.09 7.62 -51.92 -0.40 0.69 16
32 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16
33 H 0.06 0.50 6.89 -51.93 -0.36 0.14 16
34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
36 H 0.08 0.82 6.86 -51.93 -0.36 0.46 16
37 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16
38 H 0.40 4.00 6.75 -40.82 -0.28 3.72 16
39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16
41 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16
42 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16
43 H 0.10 1.13 6.51 -51.93 -0.34 0.79 16
44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16
45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
46 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16
47 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16
48 H 0.35 5.36 6.27 -39.30 -0.25 5.11 16
49 H 0.09 1.35 7.60 -51.93 -0.39 0.95 16
50 H 0.04 0.61 7.96 -51.93 -0.41 0.20 16
51 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16
52 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
LS Contribution 409.07 15.07 6.16 6.16
Total: -1.00 -32.62 409.07 -7.53 -40.15
By element:
Atomic # 1 Polarization: 24.99 SS G_CDS: -8.61 Total: 16.38 kcal
Atomic # 6 Polarization: 5.53 SS G_CDS: 0.36 Total: 5.88 kcal
Atomic # 7 Polarization: -55.49 SS G_CDS: -0.18 Total: -55.66 kcal
Atomic # 8 Polarization: -28.36 SS G_CDS: -0.24 Total: -28.59 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -32.62 -7.53 -40.15 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482559932.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.502 kcal
(2) G-P(sol) polarization free energy of solvation -32.624 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds