Wall clock time and date at job start Sat Apr 11 2020 06:25:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52996 * 109.47062 * 2 1
4 4 H 1.09001 * 109.47585 * 55.49557 * 3 2 1
5 5 C 1.53005 * 109.46966 * 175.49519 * 3 2 1
6 6 N 1.46904 * 109.47378 * 295.49358 * 3 2 1
7 7 C 1.46907 * 110.99790 * 169.04480 * 6 3 2
8 8 C 1.46895 * 110.99697 * 292.99501 * 6 3 2
9 9 C 1.53005 * 109.46710 * 170.00074 * 8 6 3
10 10 N 1.46507 * 109.46833 * 180.02562 * 9 8 6
11 11 C 1.34773 * 119.99643 * 180.02562 * 10 9 8
12 12 O 1.21351 * 120.00587 * 359.97438 * 11 10 9
13 13 C 1.49451 * 120.00026 * 180.02562 * 11 10 9
14 14 O 1.21350 * 119.99995 * 359.97438 * 13 11 10
15 15 N 1.34775 * 120.00331 * 179.97438 * 13 11 10
16 16 C 1.47023 * 125.64504 * 359.68840 * 15 13 11
17 17 C 1.54337 * 107.26183 * 178.85038 * 16 15 13
18 18 C 1.55155 * 103.02221 * 338.14312 * 17 16 15
19 19 O 1.42905 * 111.00299 * 277.23157 * 18 17 16
20 20 C 1.50693 * 111.03744 * 153.39955 * 18 17 16
21 21 H 1.08007 * 120.00174 * 6.32432 * 20 18 17
22 22 C 1.37875 * 120.00119 * 186.32988 * 20 18 17
23 23 N 1.31514 * 119.99937 * 359.97438 * 22 20 18
24 24 Si 1.86807 * 120.00320 * 179.97438 * 22 20 18
25 25 H 1.48500 * 109.46890 * 90.00231 * 24 22 20
26 26 H 1.48492 * 109.47143 * 210.00133 * 24 22 20
27 27 H 1.48501 * 109.46727 * 330.00293 * 24 22 20
28 28 C 1.47425 * 125.64833 * 180.02562 * 15 13 11
29 29 H 1.09005 * 109.47498 * 295.23265 * 1 2 3
30 30 H 1.09003 * 109.47423 * 55.22674 * 1 2 3
31 31 H 1.09003 * 109.47681 * 175.22965 * 1 2 3
32 32 H 1.09004 * 109.46922 * 240.00630 * 2 1 3
33 33 H 1.08999 * 109.47202 * 120.00562 * 2 1 3
34 34 H 1.08993 * 109.47101 * 59.99927 * 5 3 2
35 35 H 1.09004 * 109.47042 * 180.02562 * 5 3 2
36 36 H 1.09002 * 109.46674 * 300.00006 * 5 3 2
37 37 H 1.08997 * 109.46727 * 181.93835 * 7 6 3
38 38 H 1.08996 * 109.46890 * 61.93419 * 7 6 3
39 39 H 1.09000 * 109.46680 * 301.93172 * 7 6 3
40 40 H 1.09006 * 109.47750 * 290.00078 * 8 6 3
41 41 H 1.08994 * 109.47567 * 50.00275 * 8 6 3
42 42 H 1.08998 * 109.47160 * 299.99792 * 9 8 6
43 43 H 1.09001 * 109.47331 * 60.00368 * 9 8 6
44 44 H 0.96996 * 120.00175 * 359.97438 * 10 9 8
45 45 H 1.09000 * 109.88421 * 298.39447 * 16 15 13
46 46 H 1.09003 * 109.88383 * 59.56602 * 16 15 13
47 47 H 1.09007 * 110.84905 * 219.67372 * 17 16 15
48 48 H 1.09002 * 110.51468 * 96.45509 * 17 16 15
49 49 H 0.96696 * 114.00332 * 173.65156 * 19 18 17
50 50 H 0.96999 * 120.00044 * 179.97438 * 23 22 20
51 51 H 1.08997 * 110.36710 * 322.92651 * 28 15 13
52 52 H 1.08994 * 110.36822 * 85.14787 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6122 1.9791 0.8469
5 6 3.5658 1.4439 0.1133
6 7 1.6411 2.1029 -1.2501
7 6 1.8817 3.5505 -1.1808
8 6 2.3318 1.5091 -2.4027
9 6 1.7152 2.0430 -3.6972
10 7 2.4035 1.4504 -4.8466
11 6 2.0277 1.7771 -6.0990
12 8 1.1188 2.5618 -6.2746
13 6 2.7295 1.1721 -7.2716
14 8 3.6380 0.3871 -7.0962
15 7 2.3533 1.4984 -8.5240
16 6 1.2695 2.4264 -8.8787
17 6 1.2240 2.5100 -10.4192
18 6 2.6474 2.0546 -10.8362
19 8 3.5757 3.1381 -10.7566
20 6 2.6400 1.4541 -12.2183
21 1 1.7397 1.4818 -12.8144
22 6 3.7824 0.8692 -12.7220
23 7 4.8788 0.8358 -11.9964
24 14 3.7731 0.1241 -14.4350
25 1 4.1640 1.1581 -15.4266
26 1 4.7375 -1.0037 -14.4895
27 1 2.4102 -0.3742 -14.7505
28 6 2.9558 0.9786 -9.7650
29 1 -0.3634 0.4381 0.9296
30 1 -0.3634 0.5861 -0.8441
31 1 -0.3634 -1.0241 -0.0855
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5139 0.8899
34 1 3.9935 0.9073 -0.7335
35 1 3.9291 2.4716 0.1138
36 1 3.8616 0.9539 1.0409
37 1 1.5460 4.0193 -2.1057
38 1 2.9473 3.7355 -1.0454
39 1 1.3302 3.9705 -0.3396
40 1 3.3890 1.7726 -2.3681
41 1 2.2264 0.4248 -2.3703
42 1 0.6581 1.7795 -3.7318
43 1 1.8206 3.1274 -3.7296
44 1 3.1302 0.8234 -4.7064
45 1 0.3200 2.0505 -8.4977
46 1 1.4745 3.4125 -8.4618
47 1 1.0347 3.5323 -10.7468
48 1 0.4699 1.8306 -10.8165
49 1 4.4946 2.8812 -10.9135
50 1 5.6824 0.4240 -12.3506
51 1 4.0327 0.8617 -9.6439
52 1 2.5000 0.0270 -10.0384
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001349213721.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:24
Heat of formation + Delta-G solvation = -112.638601 kcal
Electronic energy + Delta-G solvation = -30654.313483 eV
Core-core repulsion = 26461.040937 eV
Total energy + Delta-G solvation = -4193.272546 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.36525 -39.33391 -38.36494 -37.16727 -35.33411 -34.19350 -33.29361 -32.25502
-30.31265 -30.21551 -29.18007 -27.90068 -26.40605 -25.64063 -24.25327 -23.40242
-22.55056 -21.52813 -20.19212 -19.68659 -19.16343 -17.39841 -17.12011 -16.77841
-16.41293 -15.99035 -15.68611 -15.35260 -15.10704 -14.87579 -14.58732 -14.48499
-14.09179 -14.04375 -13.92227 -13.58177 -13.17824 -13.04771 -12.90892 -12.77260
-12.54907 -12.27517 -12.22414 -12.07580 -11.89740 -11.66521 -11.56792 -11.51455
-11.33289 -11.11284 -11.05740 -11.04357 -10.82212 -10.79503 -10.57234 -10.47611
-10.21499 -9.38317 -9.20623 -9.14362 -8.70998 -8.68672 -8.40998 -7.90326
-6.30284 -4.39716 1.81196 2.57795 3.20092 3.27698 3.30240 3.51693
3.61808 4.00132 4.25562 4.34860 4.48289 4.65536 4.72159 4.77609
4.81263 4.95981 4.97538 5.03445 5.12441 5.20720 5.23793 5.31306
5.39246 5.49610 5.56571 5.59586 5.63109 5.72563 5.75804 5.76500
5.80077 5.83637 5.89701 6.06141 6.11361 6.19546 6.34541 6.51963
6.65135 6.67818 6.73290 6.79918 6.84958 7.16321 7.24162 7.31720
7.71732 7.88099 8.00500 8.06001 8.45283 8.64571 9.27618 9.36166
10.76945
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.025289 B = 0.002008 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.919613 B =13939.308799 C =14188.857867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.117 4.117
3 C 0.080 3.920
4 H 0.084 0.916
5 C -0.189 4.189
6 N -0.528 5.528
7 C 0.016 3.984
8 C 0.037 3.963
9 C 0.122 3.878
10 N -0.708 5.708
11 C 0.511 3.489
12 O -0.515 6.515
13 C 0.508 3.492
14 O -0.539 6.539
15 N -0.574 5.574
16 C 0.111 3.889
17 C -0.122 4.122
18 C 0.248 3.752
19 O -0.581 6.581
20 C -0.536 4.536
21 H 0.068 0.932
22 C 0.070 3.930
23 N -0.894 5.894
24 Si 0.905 3.095
25 H -0.278 1.278
26 H -0.285 1.285
27 H -0.272 1.272
28 C 0.092 3.908
29 H 0.048 0.952
30 H 0.069 0.931
31 H 0.047 0.953
32 H 0.064 0.936
33 H 0.063 0.937
34 H 0.061 0.939
35 H 0.056 0.944
36 H 0.062 0.938
37 H 0.074 0.926
38 H 0.029 0.971
39 H 0.069 0.931
40 H 0.046 0.954
41 H 0.086 0.914
42 H 0.079 0.921
43 H 0.070 0.930
44 H 0.410 0.590
45 H 0.065 0.935
46 H 0.070 0.930
47 H 0.076 0.924
48 H 0.078 0.922
49 H 0.381 0.619
50 H 0.270 0.730
51 H 0.091 0.909
52 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.074 0.724 23.079 23.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.155 4.155
3 C -0.028 4.028
4 H 0.102 0.898
5 C -0.248 4.248
6 N -0.251 5.251
7 C -0.132 4.132
8 C -0.091 4.091
9 C -0.002 4.002
10 N -0.363 5.363
11 C 0.292 3.708
12 O -0.390 6.390
13 C 0.290 3.710
14 O -0.418 6.418
15 N -0.306 5.306
16 C -0.011 4.011
17 C -0.160 4.160
18 C 0.208 3.792
19 O -0.390 6.390
20 C -0.574 4.574
21 H 0.086 0.914
22 C -0.133 4.133
23 N -0.532 5.532
24 Si 0.732 3.268
25 H -0.204 1.204
26 H -0.210 1.210
27 H -0.197 1.197
28 C -0.029 4.029
29 H 0.067 0.933
30 H 0.088 0.912
31 H 0.066 0.934
32 H 0.082 0.918
33 H 0.082 0.918
34 H 0.080 0.920
35 H 0.075 0.925
36 H 0.081 0.919
37 H 0.092 0.908
38 H 0.048 0.952
39 H 0.088 0.912
40 H 0.064 0.936
41 H 0.104 0.896
42 H 0.097 0.903
43 H 0.089 0.911
44 H 0.246 0.754
45 H 0.083 0.917
46 H 0.088 0.912
47 H 0.095 0.905
48 H 0.096 0.904
49 H 0.230 0.770
50 H 0.080 0.920
51 H 0.109 0.891
52 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -6.124 1.079 23.171 23.991
hybrid contribution 1.887 -0.926 -0.729 2.224
sum -4.237 0.154 22.443 22.840
Atomic orbital electron populations
1.21680 0.95041 1.01254 1.02389 1.21616 0.97015 0.94982 1.01897
1.21786 0.93266 0.95774 0.91989 0.89790 1.22499 0.97471 1.02168
1.02677 1.62078 1.57260 1.03620 1.02188 1.22513 0.99596 0.87967
1.03143 1.22334 0.96371 1.00608 0.89792 1.21344 0.97422 0.98235
0.83150 1.45635 1.38298 1.47555 1.04843 1.20382 0.83833 0.82164
0.84380 1.90733 1.29038 1.33609 1.85615 1.19557 0.84597 0.83468
0.83412 1.90721 1.30323 1.35745 1.85046 1.48666 1.34108 1.42550
1.05248 1.22154 0.89145 0.93251 0.96598 1.22717 0.98685 1.02218
0.92332 1.19646 0.85005 0.82914 0.91673 1.86132 1.21332 1.37023
1.94464 1.21461 0.98049 1.37986 0.99916 0.91369 1.25094 0.95278
0.94736 0.98191 1.69709 1.01755 1.44511 1.37271 0.86384 0.78117
0.78732 0.83572 1.20380 1.21029 1.19666 1.23492 0.99901 0.98756
0.80734 0.93307 0.91208 0.93369 0.91756 0.91801 0.92040 0.92463
0.91930 0.90778 0.95203 0.91219 0.93572 0.89578 0.90262 0.91130
0.75375 0.91705 0.91176 0.90504 0.90355 0.76961 0.91976 0.89103
0.91409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 9.85 37.16 0.37 -0.63 16
2 C -0.12 -0.75 5.35 -26.74 -0.14 -0.89 16
3 C 0.08 0.52 2.31 -67.71 -0.16 0.36 16
4 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16
5 C -0.19 -1.15 8.44 37.16 0.31 -0.84 16
6 N -0.53 -3.96 4.06 -234.88 -0.95 -4.91 16
7 C 0.02 0.11 9.11 60.07 0.55 0.66 16
8 C 0.04 0.30 3.99 -3.82 -0.02 0.29 16
9 C 0.12 1.28 5.60 -4.04 -0.02 1.26 16
10 N -0.71 -9.17 5.55 -60.72 -0.34 -9.50 16
11 C 0.51 8.67 7.86 -11.59 -0.09 8.58 16
12 O -0.52 -9.44 14.12 5.50 0.08 -9.37 16
13 C 0.51 10.22 7.91 -11.59 -0.09 10.13 16
14 O -0.54 -11.75 16.73 5.50 0.09 -11.65 16
15 N -0.57 -12.20 3.33 -171.01 -0.57 -12.77 16
16 C 0.11 2.16 5.49 -3.06 -0.02 2.14 16
17 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16
18 C 0.25 6.00 0.87 -89.62 -0.08 5.92 16
19 O -0.58 -14.78 13.16 -35.23 -0.46 -15.24 16
20 C -0.54 -13.79 8.27 -34.44 -0.28 -14.08 16
21 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16
22 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16
23 N -0.89 -23.48 10.69 55.43 0.59 -22.88 16
24 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16
25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16
27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16
28 C 0.09 2.18 5.38 -2.52 -0.01 2.17 16
29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16
31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
32 H 0.06 0.44 6.22 -51.93 -0.32 0.12 16
33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
34 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16
35 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16
36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
37 H 0.07 0.56 6.38 -51.93 -0.33 0.22 16
38 H 0.03 0.20 6.74 -51.93 -0.35 -0.15 16
39 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16
40 H 0.05 0.37 6.83 -51.93 -0.35 0.02 16
41 H 0.09 0.67 6.06 -51.93 -0.31 0.36 16
42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
43 H 0.07 0.77 6.51 -51.93 -0.34 0.44 16
44 H 0.41 4.86 7.94 -40.82 -0.32 4.53 16
45 H 0.06 1.16 7.71 -51.93 -0.40 0.76 16
46 H 0.07 1.38 7.57 -51.93 -0.39 0.98 16
47 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16
48 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16
49 H 0.38 9.84 7.56 45.56 0.34 10.19 16
50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
51 H 0.09 2.39 7.33 -51.93 -0.38 2.00 16
52 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16
LS Contribution 405.25 15.07 6.11 6.11
Total: -1.00 -28.76 405.25 -8.41 -37.17
By element:
Atomic # 1 Polarization: 21.80 SS G_CDS: -8.00 Total: 13.80 kcal
Atomic # 6 Polarization: 14.07 SS G_CDS: 0.07 Total: 14.14 kcal
Atomic # 7 Polarization: -48.80 SS G_CDS: -1.27 Total: -50.07 kcal
Atomic # 8 Polarization: -35.97 SS G_CDS: -0.29 Total: -36.26 kcal
Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -28.76 -8.41 -37.17 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001349213721.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.466 kcal
(2) G-P(sol) polarization free energy of solvation -28.763 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds