Wall clock time and date at job start Sat Apr 11 2020 06:25:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52996 * 109.47062 * 2 1
4 4 H 1.09001 * 109.47585 * 55.49557 * 3 2 1
5 5 C 1.53005 * 109.46966 * 175.49519 * 3 2 1
6 6 N 1.46904 * 109.47378 * 295.49358 * 3 2 1
7 7 C 1.46907 * 110.99790 * 169.04480 * 6 3 2
8 8 C 1.46895 * 110.99697 * 292.99501 * 6 3 2
9 9 C 1.53005 * 109.46710 * 170.00074 * 8 6 3
10 10 N 1.46507 * 109.46833 * 180.02562 * 9 8 6
11 11 C 1.34773 * 119.99643 * 180.02562 * 10 9 8
12 12 O 1.21351 * 120.00587 * 359.97438 * 11 10 9
13 13 C 1.49451 * 120.00026 * 180.02562 * 11 10 9
14 14 O 1.21350 * 119.99995 * 359.97438 * 13 11 10
15 15 N 1.34775 * 120.00331 * 179.97438 * 13 11 10
16 16 C 1.47023 * 125.64504 * 359.68840 * 15 13 11
17 17 C 1.54337 * 107.26183 * 178.85038 * 16 15 13
18 18 C 1.55155 * 103.02221 * 338.14312 * 17 16 15
19 19 O 1.42905 * 111.00299 * 277.23157 * 18 17 16
20 20 C 1.50693 * 111.03744 * 153.39955 * 18 17 16
21 21 H 1.08007 * 120.00174 * 6.32432 * 20 18 17
22 22 C 1.37875 * 120.00119 * 186.32988 * 20 18 17
23 23 N 1.31514 * 119.99937 * 359.97438 * 22 20 18
24 24 Si 1.86807 * 120.00320 * 179.97438 * 22 20 18
25 25 H 1.48500 * 109.46890 * 90.00231 * 24 22 20
26 26 H 1.48492 * 109.47143 * 210.00133 * 24 22 20
27 27 H 1.48501 * 109.46727 * 330.00293 * 24 22 20
28 28 C 1.47425 * 125.64833 * 180.02562 * 15 13 11
29 29 H 1.09005 * 109.47498 * 295.23265 * 1 2 3
30 30 H 1.09003 * 109.47423 * 55.22674 * 1 2 3
31 31 H 1.09003 * 109.47681 * 175.22965 * 1 2 3
32 32 H 1.09004 * 109.46922 * 240.00630 * 2 1 3
33 33 H 1.08999 * 109.47202 * 120.00562 * 2 1 3
34 34 H 1.08993 * 109.47101 * 59.99927 * 5 3 2
35 35 H 1.09004 * 109.47042 * 180.02562 * 5 3 2
36 36 H 1.09002 * 109.46674 * 300.00006 * 5 3 2
37 37 H 1.08997 * 109.46727 * 181.93835 * 7 6 3
38 38 H 1.08996 * 109.46890 * 61.93419 * 7 6 3
39 39 H 1.09000 * 109.46680 * 301.93172 * 7 6 3
40 40 H 1.09006 * 109.47750 * 290.00078 * 8 6 3
41 41 H 1.08994 * 109.47567 * 50.00275 * 8 6 3
42 42 H 1.08998 * 109.47160 * 299.99792 * 9 8 6
43 43 H 1.09001 * 109.47331 * 60.00368 * 9 8 6
44 44 H 0.96996 * 120.00175 * 359.97438 * 10 9 8
45 45 H 1.09000 * 109.88421 * 298.39447 * 16 15 13
46 46 H 1.09003 * 109.88383 * 59.56602 * 16 15 13
47 47 H 1.09007 * 110.84905 * 219.67372 * 17 16 15
48 48 H 1.09002 * 110.51468 * 96.45509 * 17 16 15
49 49 H 0.96696 * 114.00332 * 173.65156 * 19 18 17
50 50 H 0.96999 * 120.00044 * 179.97438 * 23 22 20
51 51 H 1.08997 * 110.36710 * 322.92651 * 28 15 13
52 52 H 1.08994 * 110.36822 * 85.14787 * 28 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6122 1.9791 0.8469
5 6 3.5658 1.4439 0.1133
6 7 1.6411 2.1029 -1.2501
7 6 1.8817 3.5505 -1.1808
8 6 2.3318 1.5091 -2.4027
9 6 1.7152 2.0430 -3.6972
10 7 2.4035 1.4504 -4.8466
11 6 2.0277 1.7771 -6.0990
12 8 1.1188 2.5618 -6.2746
13 6 2.7295 1.1721 -7.2716
14 8 3.6380 0.3871 -7.0962
15 7 2.3533 1.4984 -8.5240
16 6 1.2695 2.4264 -8.8787
17 6 1.2240 2.5100 -10.4192
18 6 2.6474 2.0546 -10.8362
19 8 3.5757 3.1381 -10.7566
20 6 2.6400 1.4541 -12.2183
21 1 1.7397 1.4818 -12.8144
22 6 3.7824 0.8692 -12.7220
23 7 4.8788 0.8358 -11.9964
24 14 3.7731 0.1241 -14.4350
25 1 4.1640 1.1581 -15.4266
26 1 4.7375 -1.0037 -14.4895
27 1 2.4102 -0.3742 -14.7505
28 6 2.9558 0.9786 -9.7650
29 1 -0.3634 0.4381 0.9296
30 1 -0.3634 0.5861 -0.8441
31 1 -0.3634 -1.0241 -0.0855
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5139 0.8899
34 1 3.9935 0.9073 -0.7335
35 1 3.9291 2.4716 0.1138
36 1 3.8616 0.9539 1.0409
37 1 1.5460 4.0193 -2.1057
38 1 2.9473 3.7355 -1.0454
39 1 1.3302 3.9705 -0.3396
40 1 3.3890 1.7726 -2.3681
41 1 2.2264 0.4248 -2.3703
42 1 0.6581 1.7795 -3.7318
43 1 1.8206 3.1274 -3.7296
44 1 3.1302 0.8234 -4.7064
45 1 0.3200 2.0505 -8.4977
46 1 1.4745 3.4125 -8.4618
47 1 1.0347 3.5323 -10.7468
48 1 0.4699 1.8306 -10.8165
49 1 4.4946 2.8812 -10.9135
50 1 5.6824 0.4240 -12.3506
51 1 4.0327 0.8617 -9.6439
52 1 2.5000 0.0270 -10.0384
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001349213721.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:23
Heat of formation + Delta-G solvation = -134.257068 kcal
Electronic energy + Delta-G solvation = -30655.250930 eV
Core-core repulsion = 26461.040937 eV
Total energy + Delta-G solvation = -4194.209993 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.82474 -40.25468 -39.64398 -38.86747 -36.58052 -35.81473 -34.24285 -33.97755
-31.95306 -30.99755 -29.91946 -29.65495 -27.74446 -26.77006 -25.45936 -24.40381
-23.50425 -22.77670 -21.58259 -21.18504 -20.12951 -19.15323 -18.72870 -18.03314
-17.46042 -17.22857 -17.07858 -16.72626 -16.39441 -16.22554 -15.86473 -15.60133
-15.23024 -15.01260 -14.81664 -14.67237 -14.56926 -14.49460 -14.18351 -13.96022
-13.73424 -13.52071 -13.31681 -13.10904 -12.84741 -12.84013 -12.72969 -12.67601
-12.53651 -12.51849 -12.35898 -12.22599 -12.11356 -12.07631 -11.98777 -11.57875
-11.35952 -11.21874 -10.76615 -10.58686 -10.36068 -10.30650 -9.64855 -9.25977
-8.25203 -6.41875 0.33055 1.23013 1.44147 1.46188 1.55491 2.11021
2.36065 2.45126 3.00249 3.01578 3.35696 3.75706 3.77335 3.86119
3.99429 4.05675 4.14764 4.19462 4.26601 4.32393 4.36439 4.52862
4.53312 4.58785 4.65704 4.71984 4.73234 4.76059 4.81805 4.88183
4.97268 4.98706 5.05368 5.05938 5.10128 5.13644 5.17601 5.23325
5.26090 5.33277 5.38582 5.43561 5.56835 5.74486 5.95466 6.05030
6.06801 6.13832 6.36490 6.60982 6.67831 6.90957 7.26601 7.34851
8.80486
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.025289 B = 0.002008 C = 0.001973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.919613 B =13939.308799 C =14188.857867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.116 4.116
3 C 0.082 3.918
4 H 0.090 0.910
5 C -0.186 4.186
6 N -0.534 5.534
7 C 0.016 3.984
8 C 0.046 3.954
9 C 0.125 3.875
10 N -0.688 5.688
11 C 0.518 3.482
12 O -0.529 6.529
13 C 0.502 3.498
14 O -0.561 6.561
15 N -0.583 5.583
16 C 0.119 3.881
17 C -0.115 4.115
18 C 0.233 3.767
19 O -0.588 6.588
20 C -0.554 4.554
21 H 0.070 0.930
22 C 0.027 3.973
23 N -0.915 5.915
24 Si 0.965 3.035
25 H -0.276 1.276
26 H -0.285 1.285
27 H -0.265 1.265
28 C 0.106 3.894
29 H 0.053 0.947
30 H 0.055 0.945
31 H 0.048 0.952
32 H 0.059 0.941
33 H 0.074 0.926
34 H 0.055 0.945
35 H 0.055 0.945
36 H 0.070 0.930
37 H 0.066 0.934
38 H 0.032 0.968
39 H 0.079 0.921
40 H 0.050 0.950
41 H 0.091 0.909
42 H 0.075 0.925
43 H 0.070 0.930
44 H 0.417 0.583
45 H 0.085 0.915
46 H 0.069 0.931
47 H 0.085 0.915
48 H 0.092 0.908
49 H 0.374 0.626
50 H 0.270 0.730
51 H 0.059 0.941
52 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.958 0.692 24.290 25.020
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.154 4.154
3 C -0.026 4.026
4 H 0.108 0.892
5 C -0.245 4.245
6 N -0.258 5.258
7 C -0.132 4.132
8 C -0.083 4.083
9 C 0.003 3.997
10 N -0.342 5.342
11 C 0.298 3.702
12 O -0.405 6.405
13 C 0.285 3.715
14 O -0.441 6.441
15 N -0.314 5.314
16 C -0.003 4.003
17 C -0.153 4.153
18 C 0.192 3.808
19 O -0.395 6.395
20 C -0.592 4.592
21 H 0.088 0.912
22 C -0.174 4.174
23 N -0.554 5.554
24 Si 0.790 3.210
25 H -0.202 1.202
26 H -0.210 1.210
27 H -0.190 1.190
28 C -0.016 4.016
29 H 0.072 0.928
30 H 0.074 0.926
31 H 0.067 0.933
32 H 0.077 0.923
33 H 0.092 0.908
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.089 0.911
37 H 0.085 0.915
38 H 0.050 0.950
39 H 0.097 0.903
40 H 0.068 0.932
41 H 0.109 0.891
42 H 0.094 0.906
43 H 0.088 0.912
44 H 0.254 0.746
45 H 0.103 0.897
46 H 0.088 0.912
47 H 0.104 0.896
48 H 0.111 0.889
49 H 0.223 0.777
50 H 0.080 0.920
51 H 0.077 0.923
52 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -7.020 1.051 24.431 25.441
hybrid contribution 2.179 -0.920 -1.015 2.574
sum -4.841 0.131 23.416 23.911
Atomic orbital electron populations
1.21644 0.95414 1.01042 1.02008 1.21617 0.96613 0.95003 1.02157
1.21810 0.93572 0.95727 0.91507 0.89213 1.22462 0.97027 1.02078
1.02902 1.62071 1.57353 1.03981 1.02374 1.22524 0.99886 0.87607
1.03201 1.22223 0.96341 1.00804 0.88882 1.21469 0.97091 0.98127
0.83058 1.45592 1.37843 1.46658 1.04133 1.19738 0.83660 0.82236
0.84539 1.90728 1.29660 1.34405 1.85755 1.20214 0.84308 0.82975
0.83978 1.90699 1.31278 1.36644 1.85496 1.48705 1.34615 1.43023
1.05089 1.22168 0.89353 0.92924 0.95845 1.22729 0.96567 1.03012
0.93012 1.19875 0.86565 0.82941 0.91394 1.86125 1.21156 1.37762
1.94486 1.21749 0.98289 1.38342 1.00838 0.91186 1.25817 0.95015
0.95102 1.01448 1.69819 1.02108 1.44904 1.38528 0.85442 0.78208
0.77818 0.79487 1.20207 1.21041 1.18967 1.23063 0.97905 0.98418
0.82211 0.92811 0.92599 0.93335 0.92281 0.90751 0.92573 0.92628
0.91080 0.91479 0.94970 0.90273 0.93166 0.89082 0.90648 0.91171
0.74558 0.89690 0.91242 0.89622 0.88917 0.77713 0.92047 0.92272
0.92504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.76 9.85 71.98 0.71 -1.05 16
2 C -0.12 -1.27 5.35 30.59 0.16 -1.11 16
3 C 0.08 0.90 2.31 44.91 0.10 1.00 16
4 H 0.09 0.91 8.02 -2.39 -0.02 0.89 16
5 C -0.19 -1.90 8.44 71.98 0.61 -1.30 16
6 N -0.53 -7.11 4.06 -897.03 -3.64 -10.75 16
7 C 0.02 0.19 9.11 127.69 1.16 1.36 16
8 C 0.05 0.67 3.99 86.31 0.34 1.01 16
9 C 0.13 2.45 5.60 86.38 0.48 2.93 16
10 N -0.69 -16.93 5.55 -464.39 -2.58 -19.51 16
11 C 0.52 17.07 7.86 87.27 0.69 17.76 16
12 O -0.53 -18.68 14.12 -3.25 -0.05 -18.72 16
13 C 0.50 20.14 7.91 87.27 0.69 20.83 16
14 O -0.56 -24.64 16.73 -3.25 -0.05 -24.69 16
15 N -0.58 -24.77 3.33 -813.30 -2.70 -27.48 16
16 C 0.12 4.50 5.49 86.73 0.48 4.97 16
17 C -0.12 -4.60 6.13 31.79 0.19 -4.40 16
18 C 0.23 11.29 0.87 -10.14 -0.01 11.28 16
19 O -0.59 -30.32 13.16 -148.98 -1.96 -32.28 16
20 C -0.55 -28.53 8.27 25.60 0.21 -28.32 16
21 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16
22 C 0.03 1.41 5.29 84.65 0.45 1.85 16
23 N -0.91 -48.87 10.69 21.45 0.23 -48.64 16
24 Si 0.97 41.21 29.54 68.60 2.03 43.24 16
25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16
26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16
27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16
28 C 0.11 5.14 5.38 86.86 0.47 5.61 16
29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16
30 H 0.05 0.84 7.61 -2.39 -0.02 0.82 16
31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
32 H 0.06 0.72 6.22 -2.39 -0.01 0.70 16
33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.06 0.64 6.55 -2.39 -0.02 0.62 16
35 H 0.05 0.59 6.77 -2.39 -0.02 0.58 16
36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
37 H 0.07 0.92 6.38 -2.39 -0.02 0.90 16
38 H 0.03 0.38 6.74 -2.39 -0.02 0.37 16
39 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16
40 H 0.05 0.71 6.83 -2.38 -0.02 0.69 16
41 H 0.09 1.26 6.06 -2.39 -0.01 1.25 16
42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
43 H 0.07 1.44 6.51 -2.39 -0.02 1.42 16
44 H 0.42 9.34 7.94 -92.71 -0.74 8.60 16
45 H 0.08 2.88 7.71 -2.39 -0.02 2.86 16
46 H 0.07 2.64 7.57 -2.39 -0.02 2.63 16
47 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16
48 H 0.09 3.39 8.03 -2.39 -0.02 3.38 16
49 H 0.37 19.94 7.56 -74.06 -0.56 19.38 16
50 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16
51 H 0.06 3.22 7.33 -2.39 -0.02 3.20 16
52 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16
Total: -1.00 -61.02 405.25 -2.34 -63.36
By element:
Atomic # 1 Polarization: 43.40 SS G_CDS: -0.36 Total: 43.04 kcal
Atomic # 6 Polarization: 25.69 SS G_CDS: 6.74 Total: 32.43 kcal
Atomic # 7 Polarization: -97.69 SS G_CDS: -8.69 Total: -106.38 kcal
Atomic # 8 Polarization: -73.63 SS G_CDS: -2.06 Total: -75.69 kcal
Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal
Total: -61.02 -2.34 -63.36 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001349213721.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.897 kcal
(2) G-P(sol) polarization free energy of solvation -61.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.257 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds