Wall clock time and date at job start Sat Apr 11 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47256 * 2 1 4 4 H 1.09000 * 109.46915 * 304.11282 * 3 2 1 5 5 O 1.42901 * 109.47581 * 64.11256 * 3 2 1 6 6 C 1.42895 * 114.00071 * 254.23127 * 5 3 2 7 7 C 1.50704 * 109.47009 * 184.11551 * 3 2 1 8 8 O 1.21275 * 119.99887 * 252.80743 * 7 3 2 9 9 N 1.34776 * 119.99924 * 72.81048 * 7 3 2 10 10 C 1.47016 * 125.64949 * 355.86023 * 9 7 3 11 11 C 1.54325 * 107.27416 * 181.02103 * 10 9 7 12 12 C 1.55160 * 102.93690 * 22.19100 * 11 10 9 13 13 H 1.08997 * 111.03710 * 82.59243 * 12 11 10 14 14 C 1.53002 * 111.00455 * 206.42256 * 12 11 10 15 15 C 1.53004 * 109.47382 * 287.19789 * 14 12 11 16 16 N 1.46900 * 109.47459 * 179.97438 * 15 14 12 17 17 C 1.46897 * 111.00003 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47016 * 180.02562 * 17 16 15 19 19 O 1.21296 * 120.00115 * 359.97438 * 18 17 16 20 20 N 1.34783 * 120.00058 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00131 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99654 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00035 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00225 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00041 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47392 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47196 * 120.00036 * 25 23 21 28 28 H 1.48500 * 109.47419 * 240.00442 * 25 23 21 29 29 C 1.47425 * 125.64725 * 175.81447 * 9 7 3 30 30 H 1.09008 * 109.46751 * 59.81863 * 1 2 3 31 31 H 1.09000 * 109.47167 * 179.81525 * 1 2 3 32 32 H 1.09005 * 109.47512 * 299.82052 * 1 2 3 33 33 H 1.08999 * 109.47415 * 239.99477 * 2 1 3 34 34 H 1.09000 * 109.47003 * 119.99328 * 2 1 3 35 35 H 1.09003 * 109.46787 * 304.85659 * 6 5 3 36 36 H 1.08995 * 109.47266 * 64.86176 * 6 5 3 37 37 H 1.08999 * 109.47251 * 184.86632 * 6 5 3 38 38 H 1.08997 * 109.88350 * 300.44380 * 10 9 7 39 39 H 1.09000 * 109.88492 * 61.45211 * 10 9 7 40 40 H 1.09000 * 110.72283 * 263.83361 * 11 10 9 41 41 H 1.08993 * 110.72119 * 140.55209 * 11 10 9 42 42 H 1.08999 * 109.47602 * 167.19688 * 14 12 11 43 43 H 1.09006 * 109.47265 * 47.19833 * 14 12 11 44 44 H 1.08997 * 109.46986 * 300.00470 * 15 14 12 45 45 H 1.09006 * 109.46571 * 59.99730 * 15 14 12 46 46 H 1.00896 * 110.99875 * 303.95628 * 16 15 14 47 47 H 1.09005 * 109.47067 * 300.00378 * 17 16 15 48 48 H 1.08997 * 109.47039 * 60.00066 * 17 16 15 49 49 H 0.96993 * 119.99695 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00102 * 179.97438 * 24 23 21 51 51 H 1.09004 * 110.36663 * 37.07140 * 29 9 7 52 52 H 1.09002 * 110.36895 * 274.74879 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6177 1.9771 -0.8508 5 8 1.6442 2.0877 1.2121 6 6 0.5779 3.0251 1.0501 7 6 3.5436 1.4436 -0.1020 8 8 4.2167 1.7304 0.8652 9 7 4.1401 1.1260 -1.2680 10 6 3.4529 0.6778 -2.4879 11 6 4.5375 0.4080 -3.5521 12 6 5.8120 0.1764 -2.6981 13 1 5.8575 -0.8497 -2.3332 14 6 7.0734 0.5306 -3.4882 15 6 7.3280 -0.5413 -4.5500 16 7 8.5388 -0.2009 -5.3091 17 6 8.8146 -1.2100 -6.3403 18 6 10.0612 -0.8281 -7.0960 19 8 10.6607 0.1853 -6.8046 20 7 10.5095 -1.6121 -8.0965 21 6 11.6433 -1.2644 -8.7844 22 1 12.1770 -0.3621 -8.5248 23 6 12.1058 -2.0729 -9.8154 24 7 11.4561 -3.1706 -10.1316 25 14 13.6502 -1.5988 -10.7531 26 1 14.1901 -0.3277 -10.2074 27 1 14.6670 -2.6712 -10.6067 28 1 13.3218 -1.4209 -12.1904 29 6 5.5899 1.1712 -1.5317 30 1 -0.3633 0.5167 -0.8884 31 1 -0.3633 -1.0277 -0.0033 32 1 -0.3634 0.5111 0.8916 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.8505 3.7578 0.2906 36 1 -0.3246 2.4986 0.7398 37 1 0.3945 3.5339 1.9965 38 1 2.8966 -0.2373 -2.2852 39 1 2.7730 1.4550 -2.8372 40 1 4.6619 1.2727 -4.2039 41 1 4.2952 -0.4822 -4.1325 42 1 7.9253 0.5796 -2.8100 43 1 6.9390 1.4976 -3.9731 44 1 7.4624 -1.5082 -4.0652 45 1 6.4761 -0.5902 -5.2283 46 1 8.4640 0.7197 -5.7152 47 1 8.9596 -2.1818 -5.8682 48 1 7.9728 -1.2635 -7.0307 49 1 10.0296 -2.4219 -8.3304 50 1 11.7787 -3.7348 -10.8516 51 1 6.1460 0.8524 -0.6500 52 1 5.8905 2.1763 -1.8278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501541182.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:25:41 Heat of formation + Delta-G solvation = -123.288199 kcal Electronic energy + Delta-G solvation = -29135.137270 eV Core-core repulsion = 24941.402923 eV Total energy + Delta-G solvation = -4193.734347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76202 -38.91655 -38.28180 -37.55804 -35.86802 -34.14440 -33.85413 -32.85869 -31.22625 -30.21597 -29.37115 -28.23755 -26.53476 -25.66122 -24.10451 -23.53984 -22.37112 -22.07200 -20.62024 -19.88198 -19.20421 -17.92224 -17.85874 -17.30280 -16.33314 -16.21887 -16.11714 -15.83864 -15.65657 -14.94115 -14.72377 -14.48416 -14.41694 -14.30491 -13.96324 -13.87316 -13.62240 -13.43696 -13.30788 -13.07612 -12.93379 -12.65061 -12.46054 -12.36626 -12.12559 -12.07727 -11.89728 -11.58704 -11.53242 -11.44712 -11.33306 -11.07832 -11.06154 -10.96148 -10.72754 -10.55587 -10.34593 -10.22837 -9.74952 -9.52505 -9.02550 -8.46629 -8.05953 -7.96213 -6.42365 -3.83121 2.22474 2.33034 3.16041 3.26696 3.34095 3.37856 3.88663 3.90721 4.03418 4.16035 4.23170 4.27624 4.33115 4.35802 4.50721 4.65871 4.76497 4.80043 4.86070 4.93065 4.95514 5.00331 5.09608 5.16408 5.19819 5.22039 5.23860 5.26319 5.36736 5.41833 5.44233 5.49453 5.52862 5.55180 5.63381 5.69665 5.75027 5.78800 5.89790 5.97398 6.09091 6.13110 6.27117 6.53842 7.09312 7.21972 7.55006 7.66208 7.80450 8.06259 8.60891 9.17613 9.53954 10.05432 10.75474 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.001388 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.910386 B =20169.861035 C =20597.592404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.078 3.922 4 H 0.086 0.914 5 O -0.357 6.357 6 C 0.025 3.975 7 C 0.522 3.478 8 O -0.518 6.518 9 N -0.619 5.619 10 C 0.094 3.906 11 C -0.129 4.129 12 C -0.097 4.097 13 H 0.088 0.912 14 C -0.107 4.107 15 C 0.061 3.939 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.110 3.890 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.824 5.333 16.304 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.017 3.983 4 H 0.103 0.897 5 O -0.274 6.274 6 C -0.071 4.071 7 C 0.309 3.691 8 O -0.393 6.393 9 N -0.356 5.356 10 C -0.029 4.029 11 C -0.167 4.167 12 C -0.117 4.117 13 H 0.106 0.894 14 C -0.145 4.145 15 C -0.068 4.068 16 N -0.303 5.303 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.012 4.012 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.099 0.901 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.544 5.753 17.612 31.557 hybrid contribution -0.457 -0.147 -1.701 1.767 sum -26.002 5.607 15.912 30.995 Atomic orbital electron populations 1.21805 0.94534 1.02534 1.02088 1.21963 0.97256 0.94521 1.03889 1.21992 0.91413 0.95620 0.89290 0.89655 1.88039 1.53319 1.57228 1.28856 1.23009 0.89440 0.91775 1.02926 1.20353 0.89995 0.77189 0.81524 1.90735 1.65688 1.47097 1.35742 1.48479 1.08418 1.67307 1.11376 1.22221 0.96062 0.99677 0.84891 1.22769 0.93881 1.03177 0.96840 1.22370 0.94812 0.99800 0.94723 0.89369 1.21480 0.96422 0.98925 0.97657 1.21945 0.90797 0.98842 0.95260 1.60051 1.36277 1.05755 1.28218 1.21660 0.96703 0.96546 0.93226 1.19837 0.87751 0.86346 0.83493 1.90525 1.60056 1.27335 1.68799 1.41872 1.25207 1.23283 1.29746 1.19762 1.02140 1.08798 1.12160 0.87858 1.25257 0.99495 0.95494 0.97696 1.69620 1.40276 1.13583 1.30883 0.85801 0.80904 0.78718 0.78933 1.19202 1.20739 1.20785 1.22325 0.80484 0.99761 0.98599 0.92649 0.91875 0.91931 0.90119 0.90260 0.93846 0.93461 0.89098 0.90955 0.91376 0.90091 0.89590 0.90265 0.91505 0.91160 0.95558 0.83222 0.89653 0.93960 0.77476 0.91940 0.90055 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.17 37.15 0.34 -0.33 16 2 C -0.14 -0.84 5.56 -26.74 -0.15 -0.99 16 3 C 0.08 0.62 2.07 -27.88 -0.06 0.56 16 4 H 0.09 0.47 7.33 -51.93 -0.38 0.09 16 5 O -0.36 -3.46 9.56 -54.81 -0.52 -3.98 16 6 C 0.02 0.14 10.43 101.05 1.05 1.20 16 7 C 0.52 5.72 7.17 -10.98 -0.08 5.64 16 8 O -0.52 -8.08 16.78 -14.01 -0.24 -8.31 16 9 N -0.62 -5.34 3.33 -170.53 -0.57 -5.91 16 10 C 0.09 0.51 6.11 -3.07 -0.02 0.49 16 11 C -0.13 -0.72 5.90 -24.89 -0.15 -0.87 16 12 C -0.10 -0.71 3.00 -88.47 -0.27 -0.97 16 13 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 14 C -0.11 -0.96 4.98 -26.73 -0.13 -1.10 16 15 C 0.06 0.67 5.59 -3.82 -0.02 0.65 16 16 N -0.67 -10.43 6.13 -115.06 -0.70 -11.14 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 18 C 0.44 10.36 7.82 -10.98 -0.09 10.27 16 19 O -0.58 -15.85 15.78 5.54 0.09 -15.77 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.11 0.97 6.40 -2.53 -0.02 0.96 16 30 H 0.05 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.31 6.51 -51.93 -0.34 -0.03 16 33 H 0.08 0.38 5.54 -51.93 -0.29 0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.21 8.04 -51.93 -0.42 -0.20 16 36 H 0.05 0.18 6.43 -51.93 -0.33 -0.15 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.30 5.95 -51.93 -0.31 -0.01 16 39 H 0.07 0.28 8.01 -51.93 -0.42 -0.13 16 40 H 0.08 0.46 7.91 -51.93 -0.41 0.04 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.59 7.97 -51.93 -0.41 0.18 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.26 7.75 -51.93 -0.40 -0.14 16 46 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 52 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 417.04 15.07 6.28 6.28 Total: -1.00 -35.24 417.04 -8.80 -44.04 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.94 Total: 8.47 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 0.15 Total: 8.37 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.61 Total: -55.07 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.67 Total: -28.06 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.24 -8.80 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501541182.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.246 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds