Wall clock time and date at job start Sat Apr 11 2020 06:25:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52997 * 109.47256 * 2 1
4 4 H 1.09000 * 109.46915 * 304.11282 * 3 2 1
5 5 O 1.42901 * 109.47581 * 64.11256 * 3 2 1
6 6 C 1.42895 * 114.00071 * 254.23127 * 5 3 2
7 7 C 1.50704 * 109.47009 * 184.11551 * 3 2 1
8 8 O 1.21275 * 119.99887 * 252.80743 * 7 3 2
9 9 N 1.34776 * 119.99924 * 72.81048 * 7 3 2
10 10 C 1.47016 * 125.64949 * 355.86023 * 9 7 3
11 11 C 1.54325 * 107.27416 * 181.02103 * 10 9 7
12 12 C 1.55160 * 102.93690 * 22.19100 * 11 10 9
13 13 H 1.08997 * 111.03710 * 82.59243 * 12 11 10
14 14 C 1.53002 * 111.00455 * 206.42256 * 12 11 10
15 15 C 1.53004 * 109.47382 * 287.19789 * 14 12 11
16 16 N 1.46900 * 109.47459 * 179.97438 * 15 14 12
17 17 C 1.46897 * 111.00003 * 180.02562 * 16 15 14
18 18 C 1.50699 * 109.47016 * 180.02562 * 17 16 15
19 19 O 1.21296 * 120.00115 * 359.97438 * 18 17 16
20 20 N 1.34783 * 120.00058 * 180.02562 * 18 17 16
21 21 C 1.37094 * 120.00131 * 179.97438 * 20 18 17
22 22 H 1.07999 * 119.99654 * 359.97438 * 21 20 18
23 23 C 1.38942 * 120.00035 * 179.97438 * 21 20 18
24 24 N 1.31413 * 120.00225 * 0.02562 * 23 21 20
25 25 Si 1.86800 * 120.00041 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47392 * 0.02562 * 25 23 21
27 27 H 1.48504 * 109.47196 * 120.00036 * 25 23 21
28 28 H 1.48500 * 109.47419 * 240.00442 * 25 23 21
29 29 C 1.47425 * 125.64725 * 175.81447 * 9 7 3
30 30 H 1.09008 * 109.46751 * 59.81863 * 1 2 3
31 31 H 1.09000 * 109.47167 * 179.81525 * 1 2 3
32 32 H 1.09005 * 109.47512 * 299.82052 * 1 2 3
33 33 H 1.08999 * 109.47415 * 239.99477 * 2 1 3
34 34 H 1.09000 * 109.47003 * 119.99328 * 2 1 3
35 35 H 1.09003 * 109.46787 * 304.85659 * 6 5 3
36 36 H 1.08995 * 109.47266 * 64.86176 * 6 5 3
37 37 H 1.08999 * 109.47251 * 184.86632 * 6 5 3
38 38 H 1.08997 * 109.88350 * 300.44380 * 10 9 7
39 39 H 1.09000 * 109.88492 * 61.45211 * 10 9 7
40 40 H 1.09000 * 110.72283 * 263.83361 * 11 10 9
41 41 H 1.08993 * 110.72119 * 140.55209 * 11 10 9
42 42 H 1.08999 * 109.47602 * 167.19688 * 14 12 11
43 43 H 1.09006 * 109.47265 * 47.19833 * 14 12 11
44 44 H 1.08997 * 109.46986 * 300.00470 * 15 14 12
45 45 H 1.09006 * 109.46571 * 59.99730 * 15 14 12
46 46 H 1.00896 * 110.99875 * 303.95628 * 16 15 14
47 47 H 1.09005 * 109.47067 * 300.00378 * 17 16 15
48 48 H 1.08997 * 109.47039 * 60.00066 * 17 16 15
49 49 H 0.96993 * 119.99695 * 0.02562 * 20 18 17
50 50 H 0.96999 * 120.00102 * 179.97438 * 24 23 21
51 51 H 1.09004 * 110.36663 * 37.07140 * 29 9 7
52 52 H 1.09002 * 110.36895 * 274.74879 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6177 1.9771 -0.8508
5 8 1.6442 2.0877 1.2121
6 6 0.5779 3.0251 1.0501
7 6 3.5436 1.4436 -0.1020
8 8 4.2167 1.7304 0.8652
9 7 4.1401 1.1260 -1.2680
10 6 3.4529 0.6778 -2.4879
11 6 4.5375 0.4080 -3.5521
12 6 5.8120 0.1764 -2.6981
13 1 5.8575 -0.8497 -2.3332
14 6 7.0734 0.5306 -3.4882
15 6 7.3280 -0.5413 -4.5500
16 7 8.5388 -0.2009 -5.3091
17 6 8.8146 -1.2100 -6.3403
18 6 10.0612 -0.8281 -7.0960
19 8 10.6607 0.1853 -6.8046
20 7 10.5095 -1.6121 -8.0965
21 6 11.6433 -1.2644 -8.7844
22 1 12.1770 -0.3621 -8.5248
23 6 12.1058 -2.0729 -9.8154
24 7 11.4561 -3.1706 -10.1316
25 14 13.6502 -1.5988 -10.7531
26 1 14.1901 -0.3277 -10.2074
27 1 14.6670 -2.6712 -10.6067
28 1 13.3218 -1.4209 -12.1904
29 6 5.5899 1.1712 -1.5317
30 1 -0.3633 0.5167 -0.8884
31 1 -0.3633 -1.0277 -0.0033
32 1 -0.3634 0.5111 0.8916
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5137 0.8900
35 1 0.8505 3.7578 0.2906
36 1 -0.3246 2.4986 0.7398
37 1 0.3945 3.5339 1.9965
38 1 2.8966 -0.2373 -2.2852
39 1 2.7730 1.4550 -2.8372
40 1 4.6619 1.2727 -4.2039
41 1 4.2952 -0.4822 -4.1325
42 1 7.9253 0.5796 -2.8100
43 1 6.9390 1.4976 -3.9731
44 1 7.4624 -1.5082 -4.0652
45 1 6.4761 -0.5902 -5.2283
46 1 8.4640 0.7197 -5.7152
47 1 8.9596 -2.1818 -5.8682
48 1 7.9728 -1.2635 -7.0307
49 1 10.0296 -2.4219 -8.3304
50 1 11.7787 -3.7348 -10.8516
51 1 6.1460 0.8524 -0.6500
52 1 5.8905 2.1763 -1.8278
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001501541182.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:40
Heat of formation + Delta-G solvation = -149.149839 kcal
Electronic energy + Delta-G solvation = -29136.258715 eV
Core-core repulsion = 24941.402923 eV
Total energy + Delta-G solvation = -4194.855792 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.46085 -40.15291 -39.47696 -38.35544 -37.00879 -35.88995 -34.68116 -33.67963
-33.22322 -30.92008 -30.04906 -29.01152 -27.65989 -26.61929 -25.52174 -24.21222
-23.09878 -22.72335 -21.39738 -20.92378 -20.53259 -19.88552 -18.54341 -17.94586
-17.77163 -17.02726 -16.89656 -16.83177 -16.49892 -16.43508 -15.94148 -15.65885
-15.40972 -15.16806 -15.10595 -14.83806 -14.56953 -14.25616 -14.00600 -13.96442
-13.79390 -13.54153 -13.43556 -13.24712 -13.11240 -12.96638 -12.94523 -12.70992
-12.58883 -12.40202 -12.33446 -12.15325 -12.11317 -11.88525 -11.76851 -11.51431
-11.50433 -11.43409 -11.19643 -10.43664 -10.33379 -10.00624 -9.72480 -9.25835
-8.46357 -5.94967 1.37148 1.42697 1.44230 1.56702 1.69036 2.06326
2.29992 2.86172 2.95322 3.21203 3.32201 3.51787 3.64920 3.72254
3.79220 3.82405 3.91708 4.14433 4.32244 4.32969 4.34233 4.38102
4.41658 4.45712 4.48344 4.53167 4.56438 4.56999 4.64455 4.72760
4.76835 4.77173 4.81399 4.86540 4.92975 5.03891 5.06840 5.13063
5.17321 5.26714 5.33703 5.37026 5.41859 5.44544 5.92420 6.03377
6.15521 6.42150 6.47187 6.61222 7.03752 7.13596 7.57358 8.12954
8.71216
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.037529 B = 0.001388 C = 0.001359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.910386 B =20169.861035 C =20597.592404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.134 4.134
3 C 0.082 3.918
4 H 0.114 0.886
5 O -0.392 6.392
6 C 0.019 3.981
7 C 0.512 3.488
8 O -0.581 6.581
9 N -0.615 5.615
10 C 0.089 3.911
11 C -0.123 4.123
12 C -0.086 4.086
13 H 0.091 0.909
14 C -0.099 4.099
15 C 0.065 3.935
16 N -0.690 5.690
17 C 0.067 3.933
18 C 0.436 3.564
19 O -0.625 6.625
20 N -0.573 5.573
21 C -0.335 4.335
22 H 0.078 0.922
23 C -0.011 4.011
24 N -0.920 5.920
25 Si 0.992 3.008
26 H -0.274 1.274
27 H -0.271 1.271
28 H -0.270 1.270
29 C 0.106 3.894
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.054 0.946
33 H 0.097 0.903
34 H 0.055 0.945
35 H 0.050 0.950
36 H 0.068 0.932
37 H 0.093 0.907
38 H 0.092 0.908
39 H 0.090 0.910
40 H 0.084 0.916
41 H 0.105 0.895
42 H 0.060 0.940
43 H 0.069 0.931
44 H 0.075 0.925
45 H 0.050 0.950
46 H 0.344 0.656
47 H 0.102 0.898
48 H 0.070 0.930
49 H 0.397 0.603
50 H 0.278 0.722
51 H 0.058 0.942
52 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.167 4.501 14.762 32.998
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.172 4.172
3 C 0.021 3.979
4 H 0.132 0.868
5 O -0.311 6.311
6 C -0.077 4.077
7 C 0.301 3.699
8 O -0.460 6.460
9 N -0.350 5.350
10 C -0.032 4.032
11 C -0.161 4.161
12 C -0.106 4.106
13 H 0.110 0.890
14 C -0.137 4.137
15 C -0.064 4.064
16 N -0.323 5.323
17 C -0.066 4.066
18 C 0.223 3.777
19 O -0.512 6.512
20 N -0.211 5.211
21 C -0.464 4.464
22 H 0.096 0.904
23 C -0.211 4.211
24 N -0.561 5.561
25 Si 0.816 3.184
26 H -0.199 1.199
27 H -0.197 1.197
28 H -0.195 1.195
29 C -0.017 4.017
30 H 0.092 0.908
31 H 0.089 0.911
32 H 0.073 0.927
33 H 0.115 0.885
34 H 0.074 0.926
35 H 0.069 0.931
36 H 0.086 0.914
37 H 0.112 0.888
38 H 0.110 0.890
39 H 0.108 0.892
40 H 0.103 0.897
41 H 0.123 0.877
42 H 0.079 0.921
43 H 0.087 0.913
44 H 0.093 0.907
45 H 0.068 0.932
46 H 0.162 0.838
47 H 0.120 0.880
48 H 0.088 0.912
49 H 0.231 0.769
50 H 0.087 0.913
51 H 0.076 0.924
52 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -27.937 4.883 16.037 32.581
hybrid contribution 0.262 0.141 -1.189 1.226
sum -27.675 5.024 14.848 31.805
Atomic orbital electron populations
1.21790 0.92928 1.03225 1.02630 1.21955 0.98534 0.93129 1.03558
1.22119 0.89061 0.96986 0.89760 0.86814 1.88000 1.54632 1.58165
1.30264 1.23200 0.89274 0.91651 1.03560 1.21102 0.91393 0.76201
0.81201 1.90695 1.67170 1.50158 1.37951 1.48582 1.08476 1.66060
1.11892 1.22507 0.96227 1.01262 0.83228 1.22796 0.92407 1.04231
0.96643 1.22218 0.94998 0.99236 0.94110 0.89046 1.21378 0.96663
0.98678 0.97018 1.22016 0.89671 0.99379 0.95324 1.60049 1.39274
1.05148 1.27827 1.21514 0.94017 0.97436 0.93603 1.20988 0.88935
0.85111 0.82647 1.90493 1.61842 1.29085 1.69763 1.41938 1.24940
1.23822 1.30362 1.19704 1.03822 1.08909 1.14011 0.90437 1.26010
1.02086 0.95193 0.97834 1.69671 1.41282 1.13921 1.31183 0.84885
0.77415 0.78211 0.77906 1.19898 1.19674 1.19484 1.22302 0.80928
1.00078 0.98381 0.90760 0.91141 0.92701 0.88458 0.92591 0.93085
0.91364 0.88827 0.89020 0.89189 0.89731 0.87703 0.92111 0.91270
0.90698 0.93230 0.83769 0.87972 0.91245 0.76912 0.91293 0.92380
0.91375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.92 9.17 71.98 0.66 -0.26 16
2 C -0.13 -1.40 5.56 30.59 0.17 -1.23 16
3 C 0.08 1.19 2.07 29.85 0.06 1.25 16
4 H 0.11 0.93 7.33 -2.39 -0.02 0.92 16
5 O -0.39 -7.54 9.56 -130.26 -1.24 -8.78 16
6 C 0.02 0.19 10.43 113.37 1.18 1.37 16
7 C 0.51 11.29 7.17 87.66 0.63 11.92 16
8 O -0.58 -19.27 16.78 15.70 0.26 -19.00 16
9 N -0.62 -10.02 3.33 -811.82 -2.70 -12.72 16
10 C 0.09 0.67 6.11 86.73 0.53 1.20 16
11 C -0.12 -0.95 5.90 31.78 0.19 -0.76 16
12 C -0.09 -1.10 3.00 -9.40 -0.03 -1.13 16
13 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
14 C -0.10 -1.67 4.98 30.60 0.15 -1.51 16
15 C 0.06 1.25 5.59 86.30 0.48 1.73 16
16 N -0.69 -20.53 6.13 -517.93 -3.17 -23.70 16
17 C 0.07 2.18 6.17 85.56 0.53 2.71 16
18 C 0.44 20.55 7.82 87.66 0.69 21.23 16
19 O -0.63 -34.74 15.78 -3.08 -0.05 -34.79 16
20 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16
21 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16
22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16
23 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16
24 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16
25 Si 0.99 42.74 29.55 68.60 2.03 44.77 16
26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16
28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16
29 C 0.11 1.87 6.40 86.85 0.56 2.43 16
30 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16
31 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16
32 H 0.05 0.44 6.51 -2.38 -0.02 0.42 16
33 H 0.10 0.64 5.54 -2.39 -0.01 0.63 16
34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
35 H 0.05 0.42 8.04 -2.39 -0.02 0.40 16
36 H 0.07 0.39 6.43 -2.39 -0.02 0.37 16
37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
38 H 0.09 0.38 5.95 -2.39 -0.01 0.37 16
39 H 0.09 0.36 8.01 -2.39 -0.02 0.34 16
40 H 0.08 0.64 7.91 -2.39 -0.02 0.63 16
41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16
42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
43 H 0.07 1.14 7.97 -2.38 -0.02 1.12 16
44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
45 H 0.05 0.77 7.75 -2.38 -0.02 0.75 16
46 H 0.34 10.72 8.43 -89.70 -0.76 9.96 16
47 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16
48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
49 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16
50 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16
51 H 0.06 1.29 8.00 -2.38 -0.02 1.27 16
52 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16
Total: -1.00 -79.96 417.04 0.30 -79.66
By element:
Atomic # 1 Polarization: 34.20 SS G_CDS: -0.56 Total: 33.64 kcal
Atomic # 6 Polarization: 13.53 SS G_CDS: 7.08 Total: 20.60 kcal
Atomic # 7 Polarization: -108.88 SS G_CDS: -7.21 Total: -116.10 kcal
Atomic # 8 Polarization: -61.54 SS G_CDS: -1.03 Total: -62.57 kcal
Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal
Total: -79.96 0.30 -79.66 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001501541182.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.490 kcal
(2) G-P(sol) polarization free energy of solvation -79.958 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds