Wall clock time and date at job start Sat Apr 11 2020 06:24:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42896 * 114.00026 * 2 1
4 4 C 1.52995 * 109.47272 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.51513 * 305.10760 * 4 3 2
6 6 C 1.53293 * 109.51705 * 184.99983 * 4 3 2
7 7 N 1.47149 * 108.38847 * 187.77492 * 6 4 3
8 8 C 1.34772 * 120.98622 * 230.51782 * 7 6 4
9 9 O 1.21584 * 120.00404 * 184.95787 * 8 7 6
10 10 N 1.34778 * 119.99663 * 4.67353 * 8 7 6
11 11 C 1.46500 * 120.00131 * 175.22500 * 10 8 7
12 12 C 1.53043 * 109.46020 * 275.03068 * 11 10 8
13 13 C 1.53184 * 109.31641 * 178.60006 * 12 11 10
14 14 N 1.46928 * 108.76423 * 54.65169 * 13 12 11
15 15 C 1.36939 * 120.62658 * 126.36410 * 14 13 12
16 16 H 1.07994 * 120.00293 * 328.40210 * 15 14 13
17 17 C 1.38814 * 119.99862 * 148.40270 * 15 14 13
18 18 N 1.31620 * 119.99735 * 349.86678 * 17 15 14
19 19 Si 1.86797 * 120.00042 * 169.86758 * 17 15 14
20 20 H 1.48500 * 109.47163 * 0.02562 * 19 17 15
21 21 H 1.48496 * 109.47429 * 120.00257 * 19 17 15
22 22 H 1.48502 * 109.47058 * 239.99992 * 19 17 15
23 23 C 1.46923 * 118.73979 * 306.38361 * 14 13 12
24 24 C 1.53033 * 109.46173 * 154.97606 * 11 10 8
25 25 C 1.47157 * 118.03350 * 50.78437 * 7 6 4
26 26 C 1.53710 * 108.16556 * 309.15971 * 25 7 6
27 27 H 1.09003 * 109.65854 * 292.57801 * 26 25 7
28 28 C 1.52997 * 109.44806 * 172.37214 * 26 25 7
29 29 O 1.42965 * 109.51194 * 65.25400 * 4 3 2
30 30 H 1.08994 * 109.47121 * 300.00199 * 1 2 3
31 31 H 1.09007 * 109.46712 * 60.00048 * 1 2 3
32 32 H 1.08992 * 109.47174 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47379 * 59.99891 * 3 2 1
34 34 H 1.09003 * 109.46933 * 300.00226 * 3 2 1
35 35 H 1.08997 * 109.68090 * 68.05167 * 6 4 3
36 36 H 1.09004 * 109.67977 * 307.49600 * 6 4 3
37 37 H 0.96998 * 119.99878 * 355.22645 * 10 8 7
38 38 H 1.08999 * 109.45838 * 34.99776 * 11 10 8
39 39 H 1.09007 * 109.49757 * 298.56584 * 12 11 10
40 40 H 1.09008 * 109.49567 * 58.65919 * 12 11 10
41 41 H 1.09007 * 109.60090 * 294.86820 * 13 12 11
42 42 H 1.08998 * 109.70759 * 174.50581 * 13 12 11
43 43 H 0.97002 * 120.00066 * 179.97438 * 18 17 15
44 44 H 1.08993 * 109.59195 * 293.82038 * 23 14 13
45 45 H 1.08997 * 109.58396 * 173.39146 * 23 14 13
46 46 H 1.08997 * 109.50062 * 301.33526 * 24 11 10
47 47 H 1.08994 * 109.49883 * 61.40195 * 24 11 10
48 48 H 1.08994 * 109.68217 * 68.93934 * 25 7 6
49 49 H 1.09000 * 109.67973 * 189.49567 * 25 7 6
50 50 H 1.08993 * 109.47118 * 300.39558 * 28 26 25
51 51 H 1.09001 * 109.46401 * 60.38878 * 28 26 25
52 52 H 1.08999 * 109.47069 * 180.38540 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1846 0.0006
5 1 3.8514 0.5671 0.8413
6 6 4.1595 2.5791 0.1266
7 7 5.6135 2.4558 -0.0631
8 6 6.4767 2.9967 0.8192
9 8 7.6720 2.9628 0.5993
10 7 6.0146 3.5804 1.9427
11 6 6.9549 4.0750 2.9513
12 6 7.3514 2.9286 3.8844
13 6 8.3613 3.4411 4.9160
14 7 7.7860 4.6059 5.6023
15 6 7.7138 4.6449 6.9692
16 1 7.5798 3.7312 7.5292
17 6 7.8128 5.8588 7.6352
18 7 8.1733 6.9416 6.9794
19 14 7.4345 5.9557 9.4618
20 1 7.0558 4.6093 9.9610
21 1 8.6362 6.4336 10.1916
22 1 6.3113 6.9010 9.6853
23 6 7.2894 5.7279 4.7941
24 6 6.2917 5.1896 3.7636
25 6 6.0973 1.7294 -1.2480
26 6 5.3788 0.3717 -1.3042
27 1 5.7021 -0.2491 -0.4686
28 6 5.7150 -0.3283 -2.6224
29 8 3.9674 0.5844 -1.2229
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 1.6887 1.8464 0.8899
34 1 1.6886 1.8463 -0.8900
35 1 3.9517 2.9863 1.1160
36 1 3.7443 3.2374 -0.6366
37 1 5.0593 3.6730 2.0835
38 1 7.8447 4.4656 2.4576
39 1 6.4655 2.5539 4.3973
40 1 7.8024 2.1250 3.3021
41 1 9.2830 3.7323 4.4121
42 1 8.5742 2.6572 5.6428
43 1 8.2422 7.7900 7.4446
44 1 8.1235 6.2056 4.2802
45 1 6.7927 6.4518 5.4401
46 1 5.9884 5.9956 3.0955
47 1 5.4157 4.7936 4.2771
48 1 5.8738 2.3036 -2.1471
49 1 7.1732 1.5737 -1.1692
50 1 5.3933 0.2945 -3.4570
51 1 6.7912 -0.4901 -2.6836
52 1 5.2003 -1.2882 -2.6657
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000615193934.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:58
Heat of formation + Delta-G solvation = -87.921187 kcal
Electronic energy + Delta-G solvation = -31269.960154 eV
Core-core repulsion = 27077.759436 eV
Total energy + Delta-G solvation = -4192.200718 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.75407 -39.16421 -37.95987 -37.31344 -34.91371 -34.51966 -33.59324 -32.03507
-30.34948 -30.04303 -29.34307 -27.58995 -26.57548 -25.45136 -24.68289 -22.40896
-22.29732 -22.00943 -21.29875 -19.86920 -19.37607 -18.19002 -17.33010 -16.99023
-16.69815 -16.20971 -15.90551 -15.78830 -15.43932 -15.26696 -14.97193 -14.61692
-14.10176 -13.91325 -13.82248 -13.58420 -13.46713 -13.07035 -12.98236 -12.82105
-12.60790 -12.44914 -12.35273 -12.24737 -11.95702 -11.80105 -11.46092 -11.34749
-11.06000 -10.96969 -10.82263 -10.75769 -10.47443 -10.35537 -10.25709 -10.07359
-10.05944 -9.97746 -9.78114 -9.54848 -8.89065 -8.55016 -8.44036 -6.62994
-5.79669 -3.27535 2.46556 3.15465 3.25122 3.34341 3.35710 3.43303
3.45359 3.87900 4.39361 4.47797 4.49661 4.57530 4.68207 4.79128
4.79704 4.91811 4.95456 5.01778 5.05816 5.10787 5.26481 5.31687
5.35209 5.40590 5.42678 5.49533 5.51258 5.54769 5.61363 5.69378
5.84665 5.89727 6.07109 6.16168 6.28411 6.35588 6.50091 6.57234
6.60626 6.72370 6.78792 6.84585 6.88519 6.97946 7.04918 7.33971
7.65267 7.78399 7.98657 8.47115 8.65431 9.21608 9.82730 10.41442
11.28849
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014963 B = 0.002451 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.874107 B =11418.955260 C =12607.041939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.382 6.382
3 C 0.071 3.929
4 C 0.082 3.918
5 H 0.073 0.927
6 C 0.087 3.913
7 N -0.637 5.637
8 C 0.708 3.292
9 O -0.584 6.584
10 N -0.738 5.738
11 C 0.166 3.834
12 C -0.139 4.139
13 C 0.148 3.852
14 N -0.593 5.593
15 C -0.251 4.251
16 H 0.065 0.935
17 C 0.003 3.997
18 N -0.905 5.905
19 Si 0.905 3.095
20 H -0.278 1.278
21 H -0.289 1.289
22 H -0.289 1.289
23 C 0.175 3.825
24 C -0.146 4.146
25 C 0.102 3.898
26 C 0.073 3.927
27 H 0.064 0.936
28 C -0.141 4.141
29 O -0.365 6.365
30 H 0.042 0.958
31 H 0.042 0.958
32 H 0.086 0.914
33 H 0.068 0.932
34 H 0.061 0.939
35 H 0.090 0.910
36 H 0.079 0.921
37 H 0.389 0.611
38 H 0.083 0.917
39 H 0.056 0.944
40 H 0.052 0.948
41 H 0.021 0.979
42 H 0.056 0.944
43 H 0.254 0.746
44 H 0.021 0.979
45 H 0.093 0.907
46 H 0.053 0.947
47 H 0.058 0.942
48 H 0.072 0.928
49 H 0.103 0.897
50 H 0.065 0.935
51 H 0.075 0.925
52 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.128 -11.387 -18.465 25.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.301 6.301
3 C -0.007 4.007
4 C 0.022 3.978
5 H 0.091 0.909
6 C -0.038 4.038
7 N -0.376 5.376
8 C 0.410 3.590
9 O -0.462 6.462
10 N -0.393 5.393
11 C 0.063 3.937
12 C -0.179 4.179
13 C 0.021 3.979
14 N -0.316 5.316
15 C -0.381 4.381
16 H 0.083 0.917
17 C -0.195 4.195
18 N -0.550 5.550
19 Si 0.734 3.266
20 H -0.203 1.203
21 H -0.216 1.216
22 H -0.216 1.216
23 C 0.049 3.951
24 C -0.186 4.186
25 C -0.021 4.021
26 C 0.015 3.985
27 H 0.082 0.918
28 C -0.199 4.199
29 O -0.284 6.284
30 H 0.061 0.939
31 H 0.060 0.940
32 H 0.105 0.895
33 H 0.086 0.914
34 H 0.079 0.921
35 H 0.108 0.892
36 H 0.097 0.903
37 H 0.224 0.776
38 H 0.101 0.899
39 H 0.075 0.925
40 H 0.071 0.929
41 H 0.039 0.961
42 H 0.074 0.926
43 H 0.064 0.936
44 H 0.039 0.961
45 H 0.111 0.889
46 H 0.072 0.928
47 H 0.077 0.923
48 H 0.090 0.910
49 H 0.121 0.879
50 H 0.084 0.916
51 H 0.094 0.906
52 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -13.186 -11.450 -18.651 25.551
hybrid contribution -0.830 0.520 1.204 1.552
sum -14.016 -10.931 -17.448 24.907
Atomic orbital electron populations
1.22764 0.80802 1.02952 1.00025 1.87943 1.19740 1.26986 1.95409
1.22453 0.91139 0.85742 1.01316 1.22391 0.93033 0.93481 0.88851
0.90874 1.22146 0.81434 0.97163 1.03014 1.47279 1.04904 1.59394
1.26031 1.15868 0.84848 0.78446 0.79824 1.90914 1.13652 1.64323
1.77294 1.45725 1.10190 1.63724 1.19705 1.20959 0.91891 0.94288
0.86578 1.22397 1.00641 0.97237 0.97653 1.20884 0.93042 0.90849
0.93159 1.44063 1.68795 1.16360 1.02375 1.19227 1.43766 0.93367
0.81721 0.91748 1.25188 0.99677 0.96806 0.97870 1.69972 1.50497
0.99378 1.35150 0.86186 0.77563 0.77592 0.85210 1.20255 1.21629
1.21609 1.20764 0.93281 0.90393 0.90676 1.22560 1.00920 0.96532
0.98629 1.22285 1.01052 0.91866 0.86938 1.22622 0.81285 0.95177
0.99451 0.91772 1.21705 1.01931 1.00916 0.95348 1.87999 1.22299
1.81323 1.36828 0.93949 0.93975 0.89511 0.91361 0.92070 0.89193
0.90307 0.77564 0.89890 0.92493 0.92898 0.96137 0.92583 0.93613
0.96062 0.88858 0.92814 0.92346 0.91014 0.87865 0.91589 0.90617
0.91377
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 11.01 101.05 1.11 1.31 16
2 O -0.38 -3.73 10.67 -39.71 -0.42 -4.15 16
3 C 0.07 0.55 5.60 37.15 0.21 0.76 16
4 C 0.08 0.76 3.06 -26.58 -0.08 0.68 16
5 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
6 C 0.09 0.77 5.92 -3.54 -0.02 0.75 16
7 N -0.64 -7.66 3.01 -177.75 -0.54 -8.20 16
8 C 0.71 11.04 8.28 -86.92 -0.72 10.32 16
9 O -0.58 -11.41 15.47 5.29 0.08 -11.33 16
10 N -0.74 -10.75 4.99 -58.64 -0.29 -11.04 16
11 C 0.17 2.95 2.46 -67.89 -0.17 2.78 16
12 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16
13 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16
14 N -0.59 -14.82 2.99 -172.32 -0.51 -15.33 16
15 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16
16 H 0.06 1.73 7.85 -52.49 -0.41 1.32 16
17 C 0.00 0.08 5.06 -17.43 -0.09 0.00 16
18 N -0.91 -26.01 11.04 55.49 0.61 -25.40 16
19 Si 0.90 21.47 29.57 -169.99 -5.03 16.45 16
20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
23 C 0.18 4.11 5.25 -3.71 -0.02 4.09 16
24 C -0.15 -2.68 5.55 -26.61 -0.15 -2.82 16
25 C 0.10 1.10 5.94 -3.31 -0.02 1.08 16
26 C 0.07 0.71 3.41 -26.36 -0.09 0.62 16
27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
28 C -0.14 -1.04 9.57 37.16 0.36 -0.69 16
29 O -0.37 -3.90 9.99 -39.71 -0.40 -4.30 16
30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16
31 H 0.04 0.23 8.14 -51.92 -0.42 -0.20 16
32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.09 0.68 5.66 -51.93 -0.29 0.38 16
36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.39 4.57 6.11 -40.82 -0.25 4.32 16
38 H 0.08 1.67 7.51 -51.93 -0.39 1.28 16
39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
40 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16
41 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16
42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16
43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.09 2.43 6.10 -51.93 -0.32 2.11 16
46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
49 H 0.10 1.23 7.12 -51.93 -0.37 0.86 16
50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
51 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
52 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
LS Contribution 405.04 15.07 6.10 6.10
Total: -1.00 -33.34 405.04 -9.58 -42.91
By element:
Atomic # 1 Polarization: 11.12 SS G_CDS: -9.19 Total: 1.93 kcal
Atomic # 6 Polarization: 12.34 SS G_CDS: 0.00 Total: 12.35 kcal
Atomic # 7 Polarization: -59.24 SS G_CDS: -0.73 Total: -59.97 kcal
Atomic # 8 Polarization: -19.04 SS G_CDS: -0.74 Total: -19.77 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.34 -9.58 -42.91 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000615193934.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.008 kcal
(2) G-P(sol) polarization free energy of solvation -33.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds