Wall clock time and date at job start Sat Apr 11 2020 06:24:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42896 * 114.00026 * 2 1
4 4 C 1.52995 * 109.47272 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.51513 * 305.10760 * 4 3 2
6 6 C 1.53293 * 109.51705 * 184.99983 * 4 3 2
7 7 N 1.47149 * 108.38847 * 187.77492 * 6 4 3
8 8 C 1.34772 * 120.98622 * 230.51782 * 7 6 4
9 9 O 1.21584 * 120.00404 * 184.95787 * 8 7 6
10 10 N 1.34778 * 119.99663 * 4.67353 * 8 7 6
11 11 C 1.46500 * 120.00131 * 175.22500 * 10 8 7
12 12 C 1.53043 * 109.46020 * 275.03068 * 11 10 8
13 13 C 1.53184 * 109.31641 * 178.60006 * 12 11 10
14 14 N 1.46928 * 108.76423 * 54.65169 * 13 12 11
15 15 C 1.36939 * 120.62658 * 126.36410 * 14 13 12
16 16 H 1.07994 * 120.00293 * 328.40210 * 15 14 13
17 17 C 1.38814 * 119.99862 * 148.40270 * 15 14 13
18 18 N 1.31620 * 119.99735 * 349.86678 * 17 15 14
19 19 Si 1.86797 * 120.00042 * 169.86758 * 17 15 14
20 20 H 1.48500 * 109.47163 * 0.02562 * 19 17 15
21 21 H 1.48496 * 109.47429 * 120.00257 * 19 17 15
22 22 H 1.48502 * 109.47058 * 239.99992 * 19 17 15
23 23 C 1.46923 * 118.73979 * 306.38361 * 14 13 12
24 24 C 1.53033 * 109.46173 * 154.97606 * 11 10 8
25 25 C 1.47157 * 118.03350 * 50.78437 * 7 6 4
26 26 C 1.53710 * 108.16556 * 309.15971 * 25 7 6
27 27 H 1.09003 * 109.65854 * 292.57801 * 26 25 7
28 28 C 1.52997 * 109.44806 * 172.37214 * 26 25 7
29 29 O 1.42965 * 109.51194 * 65.25400 * 4 3 2
30 30 H 1.08994 * 109.47121 * 300.00199 * 1 2 3
31 31 H 1.09007 * 109.46712 * 60.00048 * 1 2 3
32 32 H 1.08992 * 109.47174 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47379 * 59.99891 * 3 2 1
34 34 H 1.09003 * 109.46933 * 300.00226 * 3 2 1
35 35 H 1.08997 * 109.68090 * 68.05167 * 6 4 3
36 36 H 1.09004 * 109.67977 * 307.49600 * 6 4 3
37 37 H 0.96998 * 119.99878 * 355.22645 * 10 8 7
38 38 H 1.08999 * 109.45838 * 34.99776 * 11 10 8
39 39 H 1.09007 * 109.49757 * 298.56584 * 12 11 10
40 40 H 1.09008 * 109.49567 * 58.65919 * 12 11 10
41 41 H 1.09007 * 109.60090 * 294.86820 * 13 12 11
42 42 H 1.08998 * 109.70759 * 174.50581 * 13 12 11
43 43 H 0.97002 * 120.00066 * 179.97438 * 18 17 15
44 44 H 1.08993 * 109.59195 * 293.82038 * 23 14 13
45 45 H 1.08997 * 109.58396 * 173.39146 * 23 14 13
46 46 H 1.08997 * 109.50062 * 301.33526 * 24 11 10
47 47 H 1.08994 * 109.49883 * 61.40195 * 24 11 10
48 48 H 1.08994 * 109.68217 * 68.93934 * 25 7 6
49 49 H 1.09000 * 109.67973 * 189.49567 * 25 7 6
50 50 H 1.08993 * 109.47118 * 300.39558 * 28 26 25
51 51 H 1.09001 * 109.46401 * 60.38878 * 28 26 25
52 52 H 1.08999 * 109.47069 * 180.38540 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1846 0.0006
5 1 3.8514 0.5671 0.8413
6 6 4.1595 2.5791 0.1266
7 7 5.6135 2.4558 -0.0631
8 6 6.4767 2.9967 0.8192
9 8 7.6720 2.9628 0.5993
10 7 6.0146 3.5804 1.9427
11 6 6.9549 4.0750 2.9513
12 6 7.3514 2.9286 3.8844
13 6 8.3613 3.4411 4.9160
14 7 7.7860 4.6059 5.6023
15 6 7.7138 4.6449 6.9692
16 1 7.5798 3.7312 7.5292
17 6 7.8128 5.8588 7.6352
18 7 8.1733 6.9416 6.9794
19 14 7.4345 5.9557 9.4618
20 1 7.0558 4.6093 9.9610
21 1 8.6362 6.4336 10.1916
22 1 6.3113 6.9010 9.6853
23 6 7.2894 5.7279 4.7941
24 6 6.2917 5.1896 3.7636
25 6 6.0973 1.7294 -1.2480
26 6 5.3788 0.3717 -1.3042
27 1 5.7021 -0.2491 -0.4686
28 6 5.7150 -0.3283 -2.6224
29 8 3.9674 0.5844 -1.2229
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 1.6887 1.8464 0.8899
34 1 1.6886 1.8463 -0.8900
35 1 3.9517 2.9863 1.1160
36 1 3.7443 3.2374 -0.6366
37 1 5.0593 3.6730 2.0835
38 1 7.8447 4.4656 2.4576
39 1 6.4655 2.5539 4.3973
40 1 7.8024 2.1250 3.3021
41 1 9.2830 3.7323 4.4121
42 1 8.5742 2.6572 5.6428
43 1 8.2422 7.7900 7.4446
44 1 8.1235 6.2056 4.2802
45 1 6.7927 6.4518 5.4401
46 1 5.9884 5.9956 3.0955
47 1 5.4157 4.7936 4.2771
48 1 5.8738 2.3036 -2.1471
49 1 7.1732 1.5737 -1.1692
50 1 5.3933 0.2945 -3.4570
51 1 6.7912 -0.4901 -2.6836
52 1 5.2003 -1.2882 -2.6657
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000615193934.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:24:57
Heat of formation + Delta-G solvation = -110.564970 kcal
Electronic energy + Delta-G solvation = -31270.942062 eV
Core-core repulsion = 27077.759436 eV
Total energy + Delta-G solvation = -4193.182626 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.78900 -40.20098 -39.02829 -38.46129 -36.11959 -35.88796 -34.43872 -33.76146
-31.80848 -31.27515 -30.78001 -28.20997 -27.63500 -26.56485 -25.96051 -23.95488
-23.65998 -23.02693 -22.29419 -21.21857 -20.76092 -19.42421 -18.59316 -18.07867
-17.73692 -17.20496 -16.83994 -16.72722 -16.50014 -16.33476 -16.06254 -15.90481
-15.52968 -15.34104 -15.07593 -14.85842 -14.73185 -14.41253 -14.14297 -14.09490
-13.72917 -13.35840 -13.25288 -13.06805 -12.99778 -12.92222 -12.65476 -12.58831
-12.49050 -12.39987 -12.21273 -12.01250 -11.98136 -11.88543 -11.76130 -11.57026
-11.39248 -11.25342 -11.10709 -10.62308 -10.57739 -10.15665 -9.52274 -8.65221
-7.87016 -5.38658 1.41649 1.48099 1.49665 1.60130 2.03295 2.51279
2.51395 2.62716 2.90648 3.30421 3.65326 3.66439 3.79497 3.86079
3.89780 3.96192 4.05323 4.07656 4.18988 4.24517 4.33591 4.40732
4.45724 4.46145 4.52118 4.57939 4.60904 4.64624 4.70412 4.78376
4.82994 4.85805 4.89995 4.91060 4.98361 5.00933 5.04641 5.15440
5.21610 5.28287 5.33513 5.47890 5.54997 5.64940 5.70733 5.82960
6.10399 6.24730 6.41869 6.86669 7.15952 7.46636 7.83310 8.37745
9.19710
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.014963 B = 0.002451 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.874107 B =11418.955260 C =12607.041939
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.413 6.413
3 C 0.071 3.929
4 C 0.081 3.919
5 H 0.058 0.942
6 C 0.086 3.914
7 N -0.633 5.633
8 C 0.706 3.294
9 O -0.629 6.629
10 N -0.725 5.725
11 C 0.180 3.820
12 C -0.123 4.123
13 C 0.145 3.855
14 N -0.609 5.609
15 C -0.262 4.262
16 H 0.066 0.934
17 C -0.048 4.048
18 N -0.937 5.937
19 Si 0.971 3.029
20 H -0.266 1.266
21 H -0.294 1.294
22 H -0.287 1.287
23 C 0.180 3.820
24 C -0.128 4.128
25 C 0.101 3.899
26 C 0.077 3.923
27 H 0.051 0.949
28 C -0.137 4.137
29 O -0.376 6.376
30 H 0.054 0.946
31 H 0.051 0.949
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.071 0.929
35 H 0.106 0.894
36 H 0.099 0.901
37 H 0.406 0.594
38 H 0.056 0.944
39 H 0.066 0.934
40 H 0.055 0.945
41 H 0.007 0.993
42 H 0.058 0.942
43 H 0.251 0.749
44 H -0.006 1.006
45 H 0.066 0.934
46 H 0.076 0.924
47 H 0.071 0.929
48 H 0.086 0.914
49 H 0.087 0.913
50 H 0.072 0.928
51 H 0.086 0.914
52 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.589 -12.098 -19.057 28.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.333 6.333
3 C -0.006 4.006
4 C 0.022 3.978
5 H 0.076 0.924
6 C -0.037 4.037
7 N -0.370 5.370
8 C 0.407 3.593
9 O -0.510 6.510
10 N -0.382 5.382
11 C 0.074 3.926
12 C -0.163 4.163
13 C 0.019 3.981
14 N -0.333 5.333
15 C -0.392 4.392
16 H 0.084 0.916
17 C -0.244 4.244
18 N -0.583 5.583
19 Si 0.799 3.201
20 H -0.190 1.190
21 H -0.221 1.221
22 H -0.214 1.214
23 C 0.054 3.946
24 C -0.167 4.167
25 C -0.022 4.022
26 C 0.018 3.982
27 H 0.069 0.931
28 C -0.194 4.194
29 O -0.295 6.295
30 H 0.072 0.928
31 H 0.070 0.930
32 H 0.110 0.890
33 H 0.109 0.891
34 H 0.089 0.911
35 H 0.124 0.876
36 H 0.117 0.883
37 H 0.245 0.755
38 H 0.075 0.925
39 H 0.085 0.915
40 H 0.074 0.926
41 H 0.024 0.976
42 H 0.076 0.924
43 H 0.060 0.940
44 H 0.012 0.988
45 H 0.084 0.916
46 H 0.095 0.905
47 H 0.090 0.910
48 H 0.104 0.896
49 H 0.106 0.894
50 H 0.091 0.909
51 H 0.105 0.895
52 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -15.718 -12.196 -19.278 27.703
hybrid contribution -0.051 0.694 1.330 1.501
sum -15.770 -11.502 -17.948 26.516
Atomic orbital electron populations
1.22917 0.79271 1.03713 1.01053 1.87892 1.21532 1.28198 1.95665
1.22546 0.89772 0.85424 1.02882 1.22461 0.94315 0.93154 0.87897
0.92360 1.22376 0.79171 0.97482 1.04700 1.47306 1.06020 1.58302
1.25380 1.15980 0.84609 0.78442 0.80224 1.90890 1.15834 1.65959
1.78279 1.45308 1.10557 1.63476 1.18853 1.20539 0.91603 0.93708
0.86716 1.22185 0.99931 0.97370 0.96832 1.20957 0.93421 0.89967
0.93743 1.44309 1.69479 1.17287 1.02207 1.19538 1.43213 0.93520
0.82976 0.91590 1.25945 0.99958 0.96507 1.01973 1.70141 1.51768
0.99703 1.36661 0.85151 0.76925 0.77875 0.80142 1.19050 1.22119
1.21358 1.20572 0.93248 0.89825 0.90990 1.22269 0.99529 0.97286
0.97634 1.22383 1.00353 0.92590 0.86874 1.22619 0.80935 0.94392
1.00213 0.93058 1.21705 1.02725 1.00761 0.94246 1.88002 1.22529
1.81520 1.37495 0.92779 0.93025 0.89036 0.89135 0.91054 0.87564
0.88296 0.75497 0.92540 0.91524 0.92628 0.97551 0.92392 0.93984
0.98828 0.91574 0.90543 0.91021 0.89627 0.89426 0.90891 0.89512
0.91252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 11.01 113.37 1.25 1.53 16
2 O -0.41 -7.29 10.67 -144.70 -1.54 -8.83 16
3 C 0.07 0.91 5.60 71.98 0.40 1.31 16
4 C 0.08 1.33 3.06 30.69 0.09 1.42 16
5 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
6 C 0.09 1.28 5.92 86.35 0.51 1.79 16
7 N -0.63 -14.14 3.01 -834.55 -2.52 -16.66 16
8 C 0.71 21.17 8.28 179.06 1.48 22.65 16
9 O -0.63 -24.58 15.47 -3.98 -0.06 -24.64 16
10 N -0.73 -19.69 4.99 -457.70 -2.29 -21.98 16
11 C 0.18 6.19 2.46 45.02 0.11 6.30 16
12 C -0.12 -4.45 5.65 30.67 0.17 -4.28 16
13 C 0.15 6.36 6.52 86.36 0.56 6.92 16
14 N -0.61 -30.76 2.99 -699.11 -2.09 -32.85 16
15 C -0.26 -14.33 9.58 84.03 0.81 -13.53 16
16 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16
17 C -0.05 -2.68 5.06 84.86 0.43 -2.25 16
18 N -0.94 -54.93 11.04 21.65 0.24 -54.69 16
19 Si 0.97 44.27 29.57 68.60 2.03 46.30 16
20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16
21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16
23 C 0.18 8.57 5.25 86.37 0.45 9.03 16
24 C -0.13 -4.49 5.55 30.67 0.17 -4.32 16
25 C 0.10 2.06 5.94 86.49 0.51 2.57 16
26 C 0.08 1.40 3.41 30.83 0.11 1.51 16
27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
28 C -0.14 -1.82 9.57 71.98 0.69 -1.14 16
29 O -0.38 -7.40 9.99 -144.70 -1.45 -8.84 16
30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16
31 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16
32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.11 1.21 5.66 -2.39 -0.01 1.20 16
36 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16
37 H 0.41 8.23 6.11 -92.71 -0.57 7.66 16
38 H 0.06 2.30 7.51 -2.39 -0.02 2.28 16
39 H 0.07 2.30 8.14 -2.38 -0.02 2.29 16
40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16
41 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16
42 H 0.06 2.46 7.93 -2.39 -0.02 2.45 16
43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16
45 H 0.07 3.51 6.10 -2.39 -0.01 3.50 16
46 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16
47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
49 H 0.09 2.09 7.12 -2.39 -0.02 2.07 16
50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
52 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
Total: -1.00 -73.35 405.04 0.41 -72.95
By element:
Atomic # 1 Polarization: 19.40 SS G_CDS: 0.33 Total: 19.73 kcal
Atomic # 6 Polarization: 21.77 SS G_CDS: 7.75 Total: 29.52 kcal
Atomic # 7 Polarization: -119.53 SS G_CDS: -6.65 Total: -126.17 kcal
Atomic # 8 Polarization: -39.26 SS G_CDS: -3.05 Total: -42.32 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal
Total: -73.35 0.41 -72.95 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000615193934.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.620 kcal
(2) G-P(sol) polarization free energy of solvation -73.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.565 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds