Wall clock time and date at job start Sat Apr 11 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.60925 * 2 1 4 4 C 1.52933 * 109.68559 * 239.60888 * 2 1 3 5 5 H 1.09001 * 109.52856 * 71.12097 * 4 2 1 6 6 C 1.53006 * 109.45518 * 310.76351 * 4 2 1 7 7 N 1.46962 * 108.87396 * 190.96446 * 4 2 1 8 8 C 1.34773 * 120.59612 * 235.20623 * 7 4 2 9 9 O 1.21584 * 119.99910 * 4.90642 * 8 7 4 10 10 N 1.34774 * 119.99963 * 184.91069 * 8 7 4 11 11 C 1.46500 * 119.99765 * 174.77854 * 10 8 7 12 12 C 1.50706 * 109.47158 * 180.27495 * 11 10 8 13 13 H 1.07997 * 119.99674 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99615 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00322 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46894 * 90.00353 * 16 14 12 18 18 H 1.48496 * 109.46911 * 210.00578 * 16 14 12 19 19 H 1.48501 * 109.47043 * 330.00204 * 16 14 12 20 20 C 1.46969 * 118.80818 * 54.93373 * 7 4 2 21 21 C 1.53365 * 108.63447 * 305.02154 * 20 7 4 22 22 N 1.46957 * 109.61510 * 120.34526 * 2 1 3 23 23 C 1.34784 * 120.59267 * 354.94991 * 22 2 1 24 24 O 1.21503 * 119.99806 * 4.95890 * 23 22 2 25 25 O 1.34640 * 119.99684 * 184.95748 * 23 22 2 26 26 C 1.45207 * 116.99488 * 179.97438 * 25 23 22 27 27 C 1.52999 * 109.46712 * 60.00105 * 26 25 23 28 28 C 1.52995 * 109.46868 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47026 * 300.00137 * 26 25 23 30 30 H 1.09008 * 109.46610 * 302.60564 * 1 2 3 31 31 H 1.08995 * 109.47538 * 62.60687 * 1 2 3 32 32 H 1.09000 * 109.47264 * 182.61244 * 1 2 3 33 33 H 1.09001 * 109.47014 * 300.65191 * 6 4 2 34 34 H 1.08998 * 109.47396 * 60.65848 * 6 4 2 35 35 H 1.09004 * 109.46776 * 180.65966 * 6 4 2 36 36 H 0.97003 * 120.00489 * 355.04632 * 10 8 7 37 37 H 1.09005 * 109.47056 * 300.27034 * 11 10 8 38 38 H 1.08993 * 109.47794 * 60.26795 * 11 10 8 39 39 H 0.97007 * 119.99685 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.61218 * 64.76995 * 20 7 4 41 41 H 1.09002 * 109.60934 * 185.28316 * 20 7 4 42 42 H 1.08998 * 109.61041 * 169.17292 * 21 20 7 43 43 H 1.08996 * 109.61236 * 289.68121 * 21 20 7 44 44 H 1.08998 * 109.47203 * 60.00549 * 27 26 25 45 45 H 1.08999 * 109.46523 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47291 * 299.99784 * 27 26 25 47 47 H 1.08995 * 109.47239 * 59.99832 * 28 26 25 48 48 H 1.08999 * 109.47191 * 179.97438 * 28 26 25 49 49 H 1.09003 * 109.46903 * 300.00161 * 28 26 25 50 50 H 1.08997 * 109.47287 * 60.00026 * 29 26 25 51 51 H 1.08999 * 109.46892 * 180.02562 * 29 26 25 52 52 H 1.08995 * 109.47132 * 300.00199 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0452 -0.7285 -1.2421 5 1 1.8549 -0.1202 -2.1264 6 6 1.3299 -2.0743 -1.3769 7 7 3.4907 -0.9504 -1.0977 8 6 4.3491 -0.5154 -2.0412 9 8 3.9403 0.1437 -2.9776 10 7 5.6607 -0.8111 -1.9469 11 6 6.5753 -0.4376 -3.0286 12 6 7.9723 -0.8846 -2.6821 13 1 8.1599 -1.3953 -1.7492 14 6 9.0108 -0.6405 -3.5555 15 7 10.2298 -1.0301 -3.2528 16 14 8.6862 0.2436 -5.1688 17 1 8.8379 1.7073 -4.9702 18 1 9.6576 -0.2206 -6.1916 19 1 7.3052 -0.0535 -5.6269 20 6 3.9840 -1.6499 0.0970 21 6 3.4694 -0.9164 1.3417 22 7 2.0233 -0.6994 1.1946 23 6 1.1649 -1.1337 2.1387 24 8 -0.0330 -1.0291 1.9648 25 8 1.6351 -1.6834 3.2743 26 6 0.6529 -2.1284 4.2469 27 6 -0.2440 -3.1945 3.6146 28 6 1.3703 -2.7198 5.4619 29 6 -0.2022 -0.9392 4.6890 30 1 -0.3633 0.5538 0.8658 31 1 -0.3634 0.4728 -0.9124 32 1 -0.3634 -1.0266 0.0468 33 1 1.5168 -2.6758 -0.4873 34 1 0.2581 -1.9071 -1.4839 35 1 1.7053 -2.5989 -2.2556 36 1 5.9984 -1.2746 -1.1645 37 1 6.2591 -0.9187 -3.9542 38 1 6.5618 0.6444 -3.1587 39 1 10.9605 -0.8587 -3.8675 40 1 3.6157 -2.6758 0.0985 41 1 5.0740 -1.6499 0.0970 42 1 3.6602 -1.5216 2.2280 43 1 3.9758 0.0442 1.4358 44 1 0.3652 -4.0417 3.2997 45 1 -0.9809 -3.5289 4.3449 46 1 -0.7550 -2.7727 2.7492 47 1 2.0091 -1.9600 5.9121 48 1 0.6332 -3.0535 6.1923 49 1 1.9798 -3.5669 5.1472 50 1 -0.7132 -0.5174 3.8235 51 1 -0.9391 -1.2732 5.4194 52 1 0.4369 -0.1797 5.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357444.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:26:05 Heat of formation + Delta-G solvation = -78.743347 kcal Electronic energy + Delta-G solvation = -32164.924756 eV Core-core repulsion = 27973.122018 eV Total energy + Delta-G solvation = -4191.802737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40805 -40.06619 -38.42129 -36.67325 -34.90218 -34.39662 -33.88214 -33.29309 -32.20870 -29.09448 -28.56952 -27.69929 -27.65825 -27.54123 -25.25665 -23.38277 -22.89970 -22.07064 -20.47628 -19.88684 -18.94835 -18.44519 -17.21879 -16.83030 -16.53483 -16.41388 -16.13756 -15.59714 -15.15163 -15.03593 -14.71877 -14.56446 -14.29735 -14.05329 -13.81108 -13.47339 -13.40859 -13.00410 -12.95628 -12.70864 -12.66315 -12.49568 -12.34687 -12.22257 -12.14435 -12.10501 -11.89344 -11.86946 -11.60971 -11.53341 -11.33415 -11.18087 -10.98287 -10.93644 -10.77131 -10.54354 -9.97369 -9.61837 -9.47381 -9.43619 -9.25067 -8.78554 -8.42065 -7.96948 -6.21845 -4.23851 1.88705 2.66027 2.95991 3.27490 3.34469 3.42910 3.56344 3.69011 4.32903 4.38073 4.42683 4.47332 4.60283 4.61294 4.71488 4.85401 4.92420 5.06555 5.11773 5.14173 5.16767 5.24039 5.27708 5.33877 5.39259 5.41050 5.46315 5.53224 5.56575 5.62324 5.67207 5.70110 5.72715 5.88203 5.98690 6.00563 6.01916 6.09040 6.19083 6.25941 6.47052 6.58976 6.77791 7.10213 7.18647 7.24172 7.35687 7.47490 8.18019 8.23561 8.62279 8.77408 9.13573 9.39276 10.90039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002600 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.453343 B =10766.396122 C =11678.478704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.151 3.849 3 H 0.080 0.920 4 C 0.146 3.854 5 H 0.114 0.886 6 C -0.157 4.157 7 N -0.633 5.633 8 C 0.701 3.299 9 O -0.598 6.598 10 N -0.722 5.722 11 C 0.238 3.762 12 C -0.542 4.542 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.097 3.903 21 C 0.098 3.902 22 N -0.588 5.588 23 C 0.654 3.346 24 O -0.561 6.561 25 O -0.366 6.366 26 C 0.137 3.863 27 C -0.182 4.182 28 C -0.141 4.141 29 C -0.182 4.182 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.391 0.609 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.076 -3.315 16.981 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.098 0.902 4 C 0.040 3.960 5 H 0.132 0.868 6 C -0.216 4.216 7 N -0.372 5.372 8 C 0.402 3.598 9 O -0.477 6.477 10 N -0.376 5.376 11 C 0.115 3.885 12 C -0.580 4.580 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.027 4.027 21 C -0.026 4.026 22 N -0.329 5.329 23 C 0.410 3.590 24 O -0.452 6.452 25 O -0.281 6.281 26 C 0.100 3.900 27 C -0.239 4.239 28 C -0.198 4.198 29 C -0.239 4.239 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.227 0.773 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.496 -2.843 16.194 27.063 hybrid contribution 0.388 0.143 -0.303 0.512 sum -21.108 -2.700 15.891 26.559 Atomic orbital electron populations 1.22326 0.91489 1.04493 1.01248 1.21680 0.96414 0.95013 0.82112 0.90178 1.21316 0.79076 0.97314 0.98247 0.86848 1.22125 1.00527 0.96886 1.02026 1.47295 1.05908 1.62182 1.21803 1.16009 0.81660 0.80017 0.82112 1.90854 1.77603 1.44534 1.34754 1.45573 1.05427 1.62036 1.24557 1.19376 0.88003 0.95580 0.85540 1.21069 0.89870 1.39872 1.07196 0.90356 1.24776 0.94706 0.94907 0.98198 1.69881 0.99790 1.46200 1.37135 0.86810 0.79025 0.80422 0.83396 1.19844 1.20953 1.18463 1.21970 1.00175 0.96172 0.84424 1.22167 0.79608 1.01823 0.98984 1.46955 1.06459 1.59481 1.19998 1.18066 0.84162 0.76913 0.79885 1.90944 1.14130 1.60788 1.79288 1.86307 1.41097 1.73381 1.27345 1.22025 0.87270 0.94307 0.86368 1.22504 1.00031 0.98247 1.03160 1.21861 1.01184 1.01520 0.95279 1.22507 1.00288 0.97764 1.03387 0.90788 0.93208 0.89962 0.92742 0.91059 0.92145 0.77313 0.95987 0.96253 0.92267 0.90981 0.88575 0.87937 0.90456 0.92244 0.91358 0.89304 0.91494 0.90279 0.91435 0.89325 0.91347 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 6.83 37.16 0.25 -1.21 16 2 C 0.15 1.73 3.35 -67.72 -0.23 1.50 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.15 1.89 2.89 -67.71 -0.20 1.69 16 5 H 0.11 1.67 6.99 -51.93 -0.36 1.30 16 6 C -0.16 -1.80 8.45 37.16 0.31 -1.49 16 7 N -0.63 -9.25 2.67 -170.89 -0.46 -9.70 16 8 C 0.70 13.65 8.29 -86.92 -0.72 12.92 16 9 O -0.60 -13.87 15.76 5.29 0.08 -13.79 16 10 N -0.72 -14.65 5.46 -66.41 -0.36 -15.02 16 11 C 0.24 5.84 4.50 -5.19 -0.02 5.81 16 12 C -0.54 -14.71 9.83 -34.44 -0.34 -15.04 16 13 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 16 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C 0.10 1.10 6.14 -3.60 -0.02 1.08 16 21 C 0.10 0.98 6.60 -3.60 -0.02 0.95 16 22 N -0.59 -6.47 2.59 -170.96 -0.44 -6.91 16 23 C 0.65 7.43 7.65 54.06 0.41 7.85 16 24 O -0.56 -6.80 7.26 -19.27 -0.14 -6.94 16 25 O -0.37 -3.80 8.54 -40.32 -0.34 -4.15 16 26 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 27 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 28 C -0.14 -0.88 8.85 37.15 0.33 -0.55 16 29 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 30 H 0.07 0.85 6.76 -51.92 -0.35 0.50 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.93 5.07 -51.93 -0.26 0.67 16 33 H 0.05 0.63 7.03 -51.93 -0.36 0.26 16 34 H 0.07 0.72 6.42 -51.93 -0.33 0.39 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.39 6.95 5.80 -40.82 -0.24 6.71 16 37 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 38 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.76 7.42 -51.93 -0.39 0.38 16 41 H 0.10 1.06 5.61 -51.93 -0.29 0.77 16 42 H 0.10 0.88 6.94 -51.93 -0.36 0.52 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -32.39 391.45 -8.03 -40.42 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.56 Total: 4.67 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 0.18 Total: 14.30 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.49 Total: -57.14 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.40 Total: -24.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -8.03 -40.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357444.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.319 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds