Wall clock time and date at job start Sat Apr 11 2020 06:26:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.60925 * 2 1
4 4 C 1.52933 * 109.68559 * 239.60888 * 2 1 3
5 5 H 1.09001 * 109.52856 * 71.12097 * 4 2 1
6 6 C 1.53006 * 109.45518 * 310.76351 * 4 2 1
7 7 N 1.46962 * 108.87396 * 190.96446 * 4 2 1
8 8 C 1.34773 * 120.59612 * 235.20623 * 7 4 2
9 9 O 1.21584 * 119.99910 * 4.90642 * 8 7 4
10 10 N 1.34774 * 119.99963 * 184.91069 * 8 7 4
11 11 C 1.46500 * 119.99765 * 174.77854 * 10 8 7
12 12 C 1.50706 * 109.47158 * 180.27495 * 11 10 8
13 13 H 1.07997 * 119.99674 * 359.97438 * 12 11 10
14 14 C 1.37875 * 119.99902 * 180.02562 * 12 11 10
15 15 N 1.31515 * 119.99615 * 179.97438 * 14 12 11
16 16 Si 1.86803 * 120.00322 * 359.97438 * 14 12 11
17 17 H 1.48494 * 109.46894 * 90.00353 * 16 14 12
18 18 H 1.48496 * 109.46911 * 210.00578 * 16 14 12
19 19 H 1.48501 * 109.47043 * 330.00204 * 16 14 12
20 20 C 1.46969 * 118.80818 * 54.93373 * 7 4 2
21 21 C 1.53365 * 108.63447 * 305.02154 * 20 7 4
22 22 N 1.46957 * 109.61510 * 120.34526 * 2 1 3
23 23 C 1.34784 * 120.59267 * 354.94991 * 22 2 1
24 24 O 1.21503 * 119.99806 * 4.95890 * 23 22 2
25 25 O 1.34640 * 119.99684 * 184.95748 * 23 22 2
26 26 C 1.45207 * 116.99488 * 179.97438 * 25 23 22
27 27 C 1.52999 * 109.46712 * 60.00105 * 26 25 23
28 28 C 1.52995 * 109.46868 * 180.02562 * 26 25 23
29 29 C 1.53001 * 109.47026 * 300.00137 * 26 25 23
30 30 H 1.09008 * 109.46610 * 302.60564 * 1 2 3
31 31 H 1.08995 * 109.47538 * 62.60687 * 1 2 3
32 32 H 1.09000 * 109.47264 * 182.61244 * 1 2 3
33 33 H 1.09001 * 109.47014 * 300.65191 * 6 4 2
34 34 H 1.08998 * 109.47396 * 60.65848 * 6 4 2
35 35 H 1.09004 * 109.46776 * 180.65966 * 6 4 2
36 36 H 0.97003 * 120.00489 * 355.04632 * 10 8 7
37 37 H 1.09005 * 109.47056 * 300.27034 * 11 10 8
38 38 H 1.08993 * 109.47794 * 60.26795 * 11 10 8
39 39 H 0.97007 * 119.99685 * 179.97438 * 15 14 12
40 40 H 1.08999 * 109.61218 * 64.76995 * 20 7 4
41 41 H 1.09002 * 109.60934 * 185.28316 * 20 7 4
42 42 H 1.08998 * 109.61041 * 169.17292 * 21 20 7
43 43 H 1.08996 * 109.61236 * 289.68121 * 21 20 7
44 44 H 1.08998 * 109.47203 * 60.00549 * 27 26 25
45 45 H 1.08999 * 109.46523 * 179.97438 * 27 26 25
46 46 H 1.08997 * 109.47291 * 299.99784 * 27 26 25
47 47 H 1.08995 * 109.47239 * 59.99832 * 28 26 25
48 48 H 1.08999 * 109.47191 * 179.97438 * 28 26 25
49 49 H 1.09003 * 109.46903 * 300.00161 * 28 26 25
50 50 H 1.08997 * 109.47287 * 60.00026 * 29 26 25
51 51 H 1.08999 * 109.46892 * 180.02562 * 29 26 25
52 52 H 1.08995 * 109.47132 * 300.00199 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8958 1.0268 0.0000
4 6 2.0452 -0.7285 -1.2421
5 1 1.8549 -0.1202 -2.1264
6 6 1.3299 -2.0743 -1.3769
7 7 3.4907 -0.9504 -1.0977
8 6 4.3491 -0.5154 -2.0412
9 8 3.9403 0.1437 -2.9776
10 7 5.6607 -0.8111 -1.9469
11 6 6.5753 -0.4376 -3.0286
12 6 7.9723 -0.8846 -2.6821
13 1 8.1599 -1.3953 -1.7492
14 6 9.0108 -0.6405 -3.5555
15 7 10.2298 -1.0301 -3.2528
16 14 8.6862 0.2436 -5.1688
17 1 8.8379 1.7073 -4.9702
18 1 9.6576 -0.2206 -6.1916
19 1 7.3052 -0.0535 -5.6269
20 6 3.9840 -1.6499 0.0970
21 6 3.4694 -0.9164 1.3417
22 7 2.0233 -0.6994 1.1946
23 6 1.1649 -1.1337 2.1387
24 8 -0.0330 -1.0291 1.9648
25 8 1.6351 -1.6834 3.2743
26 6 0.6529 -2.1284 4.2469
27 6 -0.2440 -3.1945 3.6146
28 6 1.3703 -2.7198 5.4619
29 6 -0.2022 -0.9392 4.6890
30 1 -0.3633 0.5538 0.8658
31 1 -0.3634 0.4728 -0.9124
32 1 -0.3634 -1.0266 0.0468
33 1 1.5168 -2.6758 -0.4873
34 1 0.2581 -1.9071 -1.4839
35 1 1.7053 -2.5989 -2.2556
36 1 5.9984 -1.2746 -1.1645
37 1 6.2591 -0.9187 -3.9542
38 1 6.5618 0.6444 -3.1587
39 1 10.9605 -0.8587 -3.8675
40 1 3.6157 -2.6758 0.0985
41 1 5.0740 -1.6499 0.0970
42 1 3.6602 -1.5216 2.2280
43 1 3.9758 0.0442 1.4358
44 1 0.3652 -4.0417 3.2997
45 1 -0.9809 -3.5289 4.3449
46 1 -0.7550 -2.7727 2.7492
47 1 2.0091 -1.9600 5.9121
48 1 0.6332 -3.0535 6.1923
49 1 1.9798 -3.5669 5.1472
50 1 -0.7132 -0.5174 3.8235
51 1 -0.9391 -1.2732 5.4194
52 1 0.4369 -0.1797 5.1393
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787357444.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:26:04
Heat of formation + Delta-G solvation = -99.279928 kcal
Electronic energy + Delta-G solvation = -32165.815289 eV
Core-core repulsion = 27973.122018 eV
Total energy + Delta-G solvation = -4192.693270 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 1.64 seconds
Orbital eigenvalues (eV)
-42.33363 -41.26503 -39.54036 -37.66170 -36.31163 -35.58538 -35.10734 -34.37431
-33.95671 -30.46429 -29.51520 -29.18073 -28.28763 -28.22894 -26.28596 -24.48947
-24.16767 -23.46045 -21.73867 -20.86293 -20.27285 -19.56587 -18.55963 -18.06112
-17.60598 -17.58087 -17.21918 -16.68861 -16.56992 -16.25886 -15.90663 -15.58989
-15.46705 -15.09037 -15.01552 -14.76176 -14.51065 -14.40965 -14.03060 -13.88931
-13.78883 -13.60924 -13.20175 -13.09904 -13.07485 -12.90872 -12.85809 -12.74376
-12.68655 -12.67689 -12.46185 -12.38447 -12.19997 -11.93769 -11.91540 -11.89697
-11.61811 -11.26498 -11.20404 -10.90208 -10.45217 -10.25697 -9.94424 -9.27234
-8.38247 -6.44654 1.04211 1.34572 1.36804 1.49636 1.68227 1.78919
2.14858 2.30027 2.77100 2.97613 3.03302 3.62038 3.67655 3.82269
3.87256 3.92278 3.98801 4.02017 4.16705 4.20044 4.34198 4.42115
4.52728 4.61394 4.68381 4.71045 4.73143 4.75370 4.80548 4.83585
4.84221 4.91759 4.92709 4.94615 5.06561 5.08408 5.14184 5.16000
5.25561 5.29558 5.35385 5.40228 5.48323 5.52181 5.53692 5.61049
5.89183 6.19049 6.37294 6.56643 7.06767 7.20409 7.32642 7.60301
8.76265
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.020205 B = 0.002600 C = 0.002397
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1385.453343 B =10766.396122 C =11678.478704
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.157 3.843
3 H 0.074 0.926
4 C 0.144 3.856
5 H 0.095 0.905
6 C -0.146 4.146
7 N -0.623 5.623
8 C 0.700 3.300
9 O -0.638 6.638
10 N -0.721 5.721
11 C 0.252 3.748
12 C -0.543 4.543
13 H 0.061 0.939
14 C 0.028 3.972
15 N -0.930 5.930
16 Si 0.936 3.064
17 H -0.266 1.266
18 H -0.274 1.274
19 H -0.261 1.261
20 C 0.094 3.906
21 C 0.104 3.896
22 N -0.590 5.590
23 C 0.652 3.348
24 O -0.570 6.570
25 O -0.370 6.370
26 C 0.127 3.873
27 C -0.177 4.177
28 C -0.137 4.137
29 C -0.178 4.178
30 H 0.066 0.934
31 H 0.060 0.940
32 H 0.077 0.923
33 H 0.057 0.943
34 H 0.086 0.914
35 H 0.049 0.951
36 H 0.403 0.597
37 H 0.009 0.991
38 H 0.009 0.991
39 H 0.272 0.728
40 H 0.086 0.914
41 H 0.100 0.900
42 H 0.122 0.878
43 H 0.077 0.923
44 H 0.058 0.942
45 H 0.086 0.914
46 H 0.067 0.933
47 H 0.066 0.934
48 H 0.099 0.901
49 H 0.068 0.932
50 H 0.066 0.934
51 H 0.087 0.913
52 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.310 -3.784 18.261 29.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.054 3.946
3 H 0.092 0.908
4 C 0.039 3.961
5 H 0.113 0.887
6 C -0.204 4.204
7 N -0.360 5.360
8 C 0.402 3.598
9 O -0.520 6.520
10 N -0.376 5.376
11 C 0.127 3.873
12 C -0.581 4.581
13 H 0.079 0.921
14 C -0.172 4.172
15 N -0.569 5.569
16 Si 0.759 3.241
17 H -0.191 1.191
18 H -0.199 1.199
19 H -0.185 1.185
20 C -0.029 4.029
21 C -0.020 4.020
22 N -0.331 5.331
23 C 0.408 3.592
24 O -0.461 6.461
25 O -0.285 6.285
26 C 0.091 3.909
27 C -0.235 4.235
28 C -0.194 4.194
29 C -0.235 4.235
30 H 0.085 0.915
31 H 0.078 0.922
32 H 0.096 0.904
33 H 0.076 0.924
34 H 0.105 0.895
35 H 0.068 0.932
36 H 0.241 0.759
37 H 0.027 0.973
38 H 0.027 0.973
39 H 0.081 0.919
40 H 0.105 0.895
41 H 0.118 0.882
42 H 0.140 0.860
43 H 0.095 0.905
44 H 0.077 0.923
45 H 0.105 0.895
46 H 0.086 0.914
47 H 0.086 0.914
48 H 0.117 0.883
49 H 0.087 0.913
50 H 0.085 0.915
51 H 0.105 0.895
52 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -22.758 -3.343 17.544 28.929
hybrid contribution 0.701 0.236 -0.571 0.935
sum -22.057 -3.107 16.973 28.004
Atomic orbital electron populations
1.22198 0.90599 1.04132 1.01432 1.21548 0.96927 0.94476 0.81688
0.90760 1.21434 0.78088 0.98182 0.98393 0.88667 1.22030 1.01160
0.95651 1.01597 1.47291 1.06043 1.61135 1.21565 1.16080 0.81559
0.79725 0.82469 1.90822 1.78207 1.46308 1.36703 1.45281 1.05582
1.62566 1.24195 1.18957 0.87435 0.94600 0.86280 1.21243 0.91157
1.39198 1.06487 0.92123 1.25543 0.94521 0.95691 1.01453 1.69976
1.00711 1.47610 1.38598 0.85886 0.78876 0.79576 0.79719 1.19071
1.19888 1.18523 1.22204 1.00509 0.96730 0.83477 1.22177 0.78986
1.02012 0.98791 1.46955 1.06817 1.59451 1.19859 1.18125 0.84020
0.76870 0.80163 1.90952 1.14547 1.61025 1.79550 1.86310 1.41882
1.73159 1.27158 1.22340 0.87445 0.94451 0.86635 1.22448 1.00222
0.97961 1.02827 1.21879 1.01606 1.01386 0.94535 1.22455 1.00496
0.97673 1.02877 0.91531 0.92152 0.90407 0.92419 0.89533 0.93184
0.75886 0.97276 0.97300 0.91868 0.89539 0.88234 0.85991 0.90457
0.92275 0.89516 0.91443 0.91449 0.88257 0.91321 0.91507 0.89452
0.92425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.54 6.83 71.98 0.49 -2.05 16
2 C 0.16 3.45 3.35 44.88 0.15 3.60 16
3 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
4 C 0.14 3.63 2.89 44.88 0.13 3.76 16
5 H 0.10 2.81 6.99 -2.39 -0.02 2.79 16
6 C -0.15 -3.17 8.45 71.98 0.61 -2.57 16
7 N -0.62 -17.75 2.67 -812.84 -2.17 -19.92 16
8 C 0.70 27.18 8.29 179.06 1.49 28.67 16
9 O -0.64 -29.85 15.76 -3.98 -0.06 -29.91 16
10 N -0.72 -29.16 5.46 -482.30 -2.63 -31.79 16
11 C 0.25 12.39 4.50 85.64 0.39 12.77 16
12 C -0.54 -29.65 9.83 25.60 0.25 -29.40 16
13 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16
14 C 0.03 1.59 5.47 84.65 0.46 2.05 16
15 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16
16 Si 0.94 43.99 27.47 68.60 1.88 45.88 16
17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
19 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16
20 C 0.09 1.99 6.14 86.41 0.53 2.52 16
21 C 0.10 1.88 6.60 86.41 0.57 2.45 16
22 N -0.59 -12.13 2.59 -925.20 -2.40 -14.53 16
23 C 0.65 13.90 7.65 129.79 0.99 14.89 16
24 O -0.57 -13.23 7.26 19.83 0.14 -13.09 16
25 O -0.37 -7.00 8.54 -55.49 -0.47 -7.48 16
26 C 0.13 1.88 1.13 -10.80 -0.01 1.87 16
27 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16
28 C -0.14 -1.34 8.85 71.98 0.64 -0.70 16
29 C -0.18 -2.61 8.37 71.98 0.60 -2.00 16
30 H 0.07 1.47 6.76 -2.38 -0.02 1.45 16
31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
32 H 0.08 1.66 5.07 -2.39 -0.01 1.64 16
33 H 0.06 1.22 7.03 -2.39 -0.02 1.20 16
34 H 0.09 1.62 6.42 -2.39 -0.02 1.61 16
35 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16
36 H 0.40 14.14 5.80 -92.71 -0.54 13.61 16
37 H 0.01 0.48 7.20 -2.38 -0.02 0.47 16
38 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16
39 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16
40 H 0.09 1.64 7.42 -2.39 -0.02 1.62 16
41 H 0.10 2.05 5.61 -2.39 -0.01 2.04 16
42 H 0.12 1.80 6.94 -2.39 -0.02 1.78 16
43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
46 H 0.07 1.29 5.88 -2.39 -0.01 1.28 16
47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16
49 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
50 H 0.07 1.30 5.88 -2.39 -0.01 1.28 16
51 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16
52 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
Total: -1.00 -69.54 391.45 2.81 -66.73
By element:
Atomic # 1 Polarization: 24.61 SS G_CDS: 0.33 Total: 24.94 kcal
Atomic # 6 Polarization: 26.01 SS G_CDS: 7.89 Total: 33.89 kcal
Atomic # 7 Polarization: -114.06 SS G_CDS: -6.90 Total: -120.96 kcal
Atomic # 8 Polarization: -50.09 SS G_CDS: -0.39 Total: -50.48 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal
Total: -69.54 2.81 -66.73 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787357444.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.550 kcal
(2) G-P(sol) polarization free energy of solvation -69.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.65 seconds