Wall clock time and date at job start Sat Apr 11 2020 06:25:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42901 * 113.99406 * 2 1
4 4 C 1.53004 * 109.46492 * 180.02562 * 3 2 1
5 5 C 1.50704 * 109.46940 * 180.02562 * 4 3 2
6 6 O 1.21276 * 119.99756 * 359.97438 * 5 4 3
7 7 N 1.34777 * 119.99903 * 179.97438 * 5 4 3
8 8 C 1.46927 * 120.62998 * 5.43598 * 7 5 4
9 9 C 1.53193 * 108.77054 * 126.37248 * 8 7 5
10 10 C 1.53037 * 109.31523 * 54.63600 * 9 8 7
11 11 C 1.53078 * 109.65935 * 298.69935 * 10 9 8
12 12 H 1.08996 * 109.62574 * 181.16823 * 11 10 9
13 13 C 1.53002 * 109.38831 * 301.27826 * 11 10 9
14 14 C 1.46923 * 120.62810 * 185.41574 * 7 5 4
15 15 H 1.09007 * 109.58316 * 113.69756 * 14 7 5
16 16 C 1.52999 * 109.58825 * 353.41877 * 14 7 5
17 17 N 1.46899 * 109.46876 * 180.09034 * 16 14 7
18 18 C 1.46903 * 110.99737 * 174.99453 * 17 16 14
19 19 C 1.50701 * 109.47299 * 180.02562 * 18 17 16
20 20 O 1.21290 * 119.99736 * 359.97438 * 19 18 17
21 21 N 1.34773 * 120.00399 * 179.97438 * 19 18 17
22 22 C 1.37099 * 120.00168 * 179.97438 * 21 19 18
23 23 H 1.08000 * 119.99897 * 0.02562 * 22 21 19
24 24 C 1.38949 * 119.99813 * 179.97438 * 22 21 19
25 25 N 1.31412 * 120.00173 * 359.72630 * 24 22 21
26 26 Si 1.86799 * 120.00001 * 180.02562 * 24 22 21
27 27 H 1.48492 * 109.47450 * 179.72447 * 26 24 22
28 28 H 1.48506 * 109.47103 * 299.72773 * 26 24 22
29 29 H 1.48503 * 109.47157 * 59.72247 * 26 24 22
30 30 H 1.09000 * 109.47030 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47015 * 299.99940 * 1 2 3
32 32 H 1.08999 * 109.47241 * 60.00312 * 1 2 3
33 33 H 1.09000 * 109.47249 * 60.00200 * 3 2 1
34 34 H 1.09002 * 109.47125 * 299.99500 * 3 2 1
35 35 H 1.09000 * 109.47462 * 60.00022 * 4 3 2
36 36 H 1.09002 * 109.46774 * 299.99405 * 4 3 2
37 37 H 1.08993 * 109.58807 * 246.15461 * 8 7 5
38 38 H 1.08996 * 109.58499 * 6.44581 * 8 7 5
39 39 H 1.08999 * 109.49601 * 174.58734 * 9 8 7
40 40 H 1.09007 * 109.49770 * 294.65080 * 9 8 7
41 41 H 1.09004 * 109.46118 * 58.65328 * 10 9 8
42 42 H 1.08995 * 109.46497 * 178.62530 * 10 9 8
43 43 H 1.09000 * 109.47042 * 179.74963 * 13 11 10
44 44 H 1.09000 * 109.47026 * 299.74587 * 13 11 10
45 45 H 1.08997 * 109.47575 * 59.74778 * 13 11 10
46 46 H 1.09004 * 109.46805 * 60.09322 * 16 14 7
47 47 H 1.08989 * 109.47278 * 300.09477 * 16 14 7
48 48 H 1.00897 * 111.00314 * 298.94026 * 17 16 14
49 49 H 1.08995 * 109.47376 * 60.00018 * 18 17 16
50 50 H 1.09001 * 109.47126 * 299.99954 * 18 17 16
51 51 H 0.97003 * 119.99979 * 359.97438 * 21 19 18
52 52 H 0.96999 * 120.00000 * 0.27554 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 6 4.1484 2.5615 0.0000
6 8 3.4355 3.5426 0.0004
7 7 5.4887 2.7024 0.0001
8 6 6.3648 1.5290 -0.1202
9 6 7.3377 1.7571 -1.2813
10 6 8.0813 3.0773 -1.0667
11 6 7.0795 4.2345 -1.0416
12 1 7.6115 5.1766 -0.9095
13 6 6.3055 4.2650 -2.3611
14 6 6.1016 4.0323 0.1200
15 1 6.6384 4.1033 1.0661
16 6 5.0126 5.1056 0.0665
17 7 5.6283 6.4341 0.1845
18 6 4.6262 7.4954 0.0182
19 6 5.2935 8.8407 0.1447
20 8 6.4864 8.9087 0.3532
21 7 4.5648 9.9682 0.0260
22 6 5.1718 11.1921 0.1416
23 1 6.2340 11.2526 0.3273
24 6 4.4206 12.3545 0.0187
25 7 3.1293 12.2808 -0.2137
26 14 5.2477 14.0220 0.1754
27 1 4.2362 15.0948 -0.0005
28 1 5.8684 14.1424 1.5191
29 1 6.2963 14.1545 -0.8678
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.6885 1.8464 0.8900
34 1 1.6885 1.8464 -0.8900
35 1 3.8567 0.6440 -0.8908
36 1 3.8574 0.6437 0.8892
37 1 6.9252 1.3950 0.8050
38 1 5.7624 0.6416 -0.3144
39 1 8.0553 0.9376 -1.3210
40 1 6.7822 1.8000 -2.2183
41 1 8.6166 3.0426 -0.1178
42 1 8.7918 3.2302 -1.8790
43 1 5.5886 5.0858 -2.3429
44 1 7.0017 4.4089 -3.1874
45 1 5.7750 3.3221 -2.4931
46 1 4.3132 4.9549 0.8890
47 1 4.4792 5.0352 -0.8814
48 1 6.1146 6.5306 1.0632
49 1 3.8603 7.3956 0.7873
50 1 4.1660 7.4096 -0.9661
51 1 3.6108 9.9138 -0.1412
52 1 2.6998 11.4150 -0.2954
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001482478828.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:14
Heat of formation + Delta-G solvation = -105.365809 kcal
Electronic energy + Delta-G solvation = -30975.059716 eV
Core-core repulsion = 26782.102542 eV
Total energy + Delta-G solvation = -4192.957174 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.07538 -38.55685 -38.25700 -37.71430 -35.60773 -34.19868 -33.72619 -32.32053
-31.62228 -30.96797 -28.26822 -27.00934 -26.72481 -25.57978 -24.38115 -23.77558
-23.23383 -21.58520 -20.23639 -19.57587 -18.62266 -17.83389 -17.59213 -16.74342
-16.56015 -16.12787 -15.95225 -15.76305 -15.44581 -15.17620 -14.79872 -14.65414
-14.44468 -14.16671 -13.87375 -13.78476 -13.62481 -13.51287 -13.21554 -13.04164
-12.69034 -12.49344 -12.26286 -12.06348 -11.86581 -11.73339 -11.59440 -11.51044
-11.44485 -11.17399 -11.13297 -10.97392 -10.86406 -10.61466 -10.38226 -10.17216
-10.04143 -9.81235 -9.51879 -9.48280 -8.79468 -8.39191 -7.97729 -7.83675
-6.69536 -3.82170 2.35750 2.54268 3.35231 3.37890 3.42024 3.58658
3.93222 4.19638 4.29360 4.38432 4.52336 4.59459 4.63018 4.66515
4.71917 4.80433 4.99855 5.00066 5.00823 5.01770 5.12658 5.17396
5.24332 5.30391 5.31259 5.36945 5.39787 5.44781 5.45519 5.56485
5.60847 5.70115 5.78716 5.84134 5.89960 5.97182 6.02429 6.04904
6.12042 6.17144 6.29662 6.41265 6.57375 6.73960 7.10409 7.31152
7.73085 7.87680 7.95835 8.14151 8.67449 8.87089 9.54858 9.95927
10.74141
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.012649 B = 0.002382 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2213.059379 B =11751.535473 C =13588.791088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.397 6.397
3 C 0.076 3.924
4 C -0.140 4.140
5 C 0.516 3.484
6 O -0.530 6.530
7 N -0.604 5.604
8 C 0.107 3.893
9 C -0.138 4.138
10 C -0.118 4.118
11 C -0.094 4.094
12 H 0.099 0.901
13 C -0.141 4.141
14 C 0.155 3.845
15 H 0.070 0.930
16 C 0.067 3.933
17 N -0.674 5.674
18 C 0.058 3.942
19 C 0.445 3.555
20 O -0.578 6.578
21 N -0.578 5.578
22 C -0.381 4.381
23 H 0.098 0.902
24 C -0.011 4.011
25 N -0.903 5.903
26 Si 1.092 2.908
27 H -0.279 1.279
28 H -0.284 1.284
29 H -0.284 1.284
30 H 0.086 0.914
31 H 0.043 0.957
32 H 0.043 0.957
33 H 0.059 0.941
34 H 0.059 0.941
35 H 0.100 0.900
36 H 0.100 0.900
37 H 0.070 0.930
38 H 0.085 0.915
39 H 0.073 0.927
40 H 0.071 0.929
41 H 0.062 0.938
42 H 0.066 0.934
43 H 0.063 0.937
44 H 0.050 0.950
45 H 0.047 0.953
46 H 0.049 0.951
47 H 0.088 0.912
48 H 0.343 0.657
49 H 0.041 0.959
50 H 0.083 0.917
51 H 0.376 0.624
52 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.845 -28.605 -0.916 28.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.316 6.316
3 C -0.001 4.001
4 C -0.180 4.180
5 C 0.304 3.696
6 O -0.407 6.407
7 N -0.338 5.338
8 C -0.016 4.016
9 C -0.176 4.176
10 C -0.155 4.155
11 C -0.113 4.113
12 H 0.117 0.883
13 C -0.198 4.198
14 C 0.052 3.948
15 H 0.088 0.912
16 C -0.061 4.061
17 N -0.307 5.307
18 C -0.075 4.075
19 C 0.231 3.769
20 O -0.461 6.461
21 N -0.216 5.216
22 C -0.510 4.510
23 H 0.116 0.884
24 C -0.213 4.213
25 N -0.542 5.542
26 Si 0.918 3.082
27 H -0.205 1.205
28 H -0.211 1.211
29 H -0.210 1.210
30 H 0.105 0.895
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.118 0.882
36 H 0.118 0.882
37 H 0.088 0.912
38 H 0.104 0.896
39 H 0.091 0.909
40 H 0.090 0.910
41 H 0.081 0.919
42 H 0.084 0.916
43 H 0.082 0.918
44 H 0.069 0.931
45 H 0.066 0.934
46 H 0.067 0.933
47 H 0.107 0.893
48 H 0.161 0.839
49 H 0.059 0.941
50 H 0.101 0.899
51 H 0.208 0.792
52 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 1.303 -26.523 -1.469 26.596
hybrid contribution -0.888 -1.729 0.758 2.087
sum 0.414 -28.252 -0.710 28.264
Atomic orbital electron populations
1.22738 0.80480 1.02723 1.00359 1.87782 1.20169 1.28074 1.95607
1.22178 0.91836 0.84189 1.01936 1.21542 0.95512 0.95637 1.05285
1.20377 0.82049 0.90945 0.76234 1.90791 1.61097 1.39399 1.49366
1.48115 1.05144 1.07940 1.72602 1.21785 0.92963 0.87651 0.99187
1.21965 0.98465 0.98438 0.98706 1.21604 0.97771 0.94109 1.02059
1.21416 0.95689 0.99409 0.94802 0.88276 1.21814 1.00249 1.01523
0.96221 1.21301 0.94310 0.80789 0.98392 0.91166 1.22587 0.93363
0.86642 1.03552 1.60056 1.28191 1.00960 1.41536 1.21547 0.93414
0.91022 1.01486 1.19803 0.87887 0.84904 0.84271 1.90509 1.14982
1.86900 1.53715 1.41947 1.09735 1.05738 1.64189 1.20522 0.96945
0.83280 1.50265 0.88392 1.26501 0.95632 1.03546 0.95662 1.70890
1.09747 1.27452 1.46137 0.83129 0.74728 0.73430 0.76926 1.20457
1.21075 1.21031 0.89544 0.93883 0.93859 0.92316 0.92285 0.88196
0.88198 0.91156 0.89648 0.90851 0.91009 0.91916 0.91554 0.91783
0.93128 0.93446 0.93289 0.89331 0.83856 0.94096 0.89899 0.79156
0.92749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 11.01 101.05 1.11 1.34 16
2 O -0.40 -3.69 10.70 -35.23 -0.38 -4.07 16
3 C 0.08 0.69 5.23 37.16 0.19 0.89 16
4 C -0.14 -1.09 4.48 -27.88 -0.12 -1.22 16
5 C 0.52 5.49 7.61 -10.98 -0.08 5.40 16
6 O -0.53 -7.48 11.39 5.56 0.06 -7.42 16
7 N -0.60 -5.72 2.42 -165.23 -0.40 -6.12 16
8 C 0.11 0.67 6.33 -3.71 -0.02 0.65 16
9 C -0.14 -0.89 5.74 -26.61 -0.15 -1.04 16
10 C -0.12 -0.98 5.42 -26.67 -0.14 -1.13 16
11 C -0.09 -1.05 2.58 -90.48 -0.23 -1.28 16
12 H 0.10 1.35 7.81 -51.93 -0.41 0.94 16
13 C -0.14 -1.65 8.21 37.16 0.30 -1.35 16
14 C 0.15 1.80 2.88 -67.60 -0.19 1.60 16
15 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16
16 C 0.07 0.97 3.04 -3.82 -0.01 0.96 16
17 N -0.67 -11.52 5.47 -115.06 -0.63 -12.15 16
18 C 0.06 1.12 6.16 -4.97 -0.03 1.09 16
19 C 0.45 10.99 7.82 -10.99 -0.09 10.91 16
20 O -0.58 -16.17 15.78 5.55 0.09 -16.09 16
21 N -0.58 -15.17 5.28 -10.96 -0.06 -15.23 16
22 C -0.38 -11.03 9.68 -14.93 -0.14 -11.18 16
23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
24 C -0.01 -0.32 5.50 -17.47 -0.10 -0.41 16
25 N -0.90 -26.05 13.68 55.50 0.76 -25.29 16
26 Si 1.09 24.89 29.92 -169.99 -5.09 19.80 16
27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
35 H 0.10 0.64 7.47 -51.93 -0.39 0.25 16
36 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16
37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.09 0.38 5.96 -51.93 -0.31 0.07 16
39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16
41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16
44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
45 H 0.05 0.51 5.97 -51.93 -0.31 0.20 16
46 H 0.05 0.78 6.46 -51.93 -0.34 0.45 16
47 H 0.09 1.41 5.20 -51.94 -0.27 1.14 16
48 H 0.34 6.00 8.49 -39.29 -0.33 5.67 16
49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
50 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16
51 H 0.38 9.19 6.73 -40.82 -0.27 8.92 16
52 H 0.26 7.28 6.77 -40.82 -0.28 7.01 16
LS Contribution 402.22 15.07 6.06 6.06
Total: -1.00 -34.59 402.22 -7.94 -42.53
By element:
Atomic # 1 Polarization: 21.38 SS G_CDS: -8.65 Total: 12.74 kcal
Atomic # 6 Polarization: 4.94 SS G_CDS: 0.29 Total: 5.23 kcal
Atomic # 7 Polarization: -58.46 SS G_CDS: -0.33 Total: -58.79 kcal
Atomic # 8 Polarization: -27.35 SS G_CDS: -0.23 Total: -27.57 kcal
Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.80 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -34.59 -7.94 -42.53 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482478828.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.833 kcal
(2) G-P(sol) polarization free energy of solvation -34.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds