Wall clock time and date at job start Sat Apr 11 2020 06:25:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42901 * 113.99406 * 2 1
4 4 C 1.53004 * 109.46492 * 180.02562 * 3 2 1
5 5 C 1.50704 * 109.46940 * 180.02562 * 4 3 2
6 6 O 1.21276 * 119.99756 * 359.97438 * 5 4 3
7 7 N 1.34777 * 119.99903 * 179.97438 * 5 4 3
8 8 C 1.46927 * 120.62998 * 5.43598 * 7 5 4
9 9 C 1.53193 * 108.77054 * 126.37248 * 8 7 5
10 10 C 1.53037 * 109.31523 * 54.63600 * 9 8 7
11 11 C 1.53078 * 109.65935 * 298.69935 * 10 9 8
12 12 H 1.08996 * 109.62574 * 181.16823 * 11 10 9
13 13 C 1.53002 * 109.38831 * 301.27826 * 11 10 9
14 14 C 1.46923 * 120.62810 * 185.41574 * 7 5 4
15 15 H 1.09007 * 109.58316 * 113.69756 * 14 7 5
16 16 C 1.52999 * 109.58825 * 353.41877 * 14 7 5
17 17 N 1.46899 * 109.46876 * 180.09034 * 16 14 7
18 18 C 1.46903 * 110.99737 * 174.99453 * 17 16 14
19 19 C 1.50701 * 109.47299 * 180.02562 * 18 17 16
20 20 O 1.21290 * 119.99736 * 359.97438 * 19 18 17
21 21 N 1.34773 * 120.00399 * 179.97438 * 19 18 17
22 22 C 1.37099 * 120.00168 * 179.97438 * 21 19 18
23 23 H 1.08000 * 119.99897 * 0.02562 * 22 21 19
24 24 C 1.38949 * 119.99813 * 179.97438 * 22 21 19
25 25 N 1.31412 * 120.00173 * 359.72630 * 24 22 21
26 26 Si 1.86799 * 120.00001 * 180.02562 * 24 22 21
27 27 H 1.48492 * 109.47450 * 179.72447 * 26 24 22
28 28 H 1.48506 * 109.47103 * 299.72773 * 26 24 22
29 29 H 1.48503 * 109.47157 * 59.72247 * 26 24 22
30 30 H 1.09000 * 109.47030 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47015 * 299.99940 * 1 2 3
32 32 H 1.08999 * 109.47241 * 60.00312 * 1 2 3
33 33 H 1.09000 * 109.47249 * 60.00200 * 3 2 1
34 34 H 1.09002 * 109.47125 * 299.99500 * 3 2 1
35 35 H 1.09000 * 109.47462 * 60.00022 * 4 3 2
36 36 H 1.09002 * 109.46774 * 299.99405 * 4 3 2
37 37 H 1.08993 * 109.58807 * 246.15461 * 8 7 5
38 38 H 1.08996 * 109.58499 * 6.44581 * 8 7 5
39 39 H 1.08999 * 109.49601 * 174.58734 * 9 8 7
40 40 H 1.09007 * 109.49770 * 294.65080 * 9 8 7
41 41 H 1.09004 * 109.46118 * 58.65328 * 10 9 8
42 42 H 1.08995 * 109.46497 * 178.62530 * 10 9 8
43 43 H 1.09000 * 109.47042 * 179.74963 * 13 11 10
44 44 H 1.09000 * 109.47026 * 299.74587 * 13 11 10
45 45 H 1.08997 * 109.47575 * 59.74778 * 13 11 10
46 46 H 1.09004 * 109.46805 * 60.09322 * 16 14 7
47 47 H 1.08989 * 109.47278 * 300.09477 * 16 14 7
48 48 H 1.00897 * 111.00314 * 298.94026 * 17 16 14
49 49 H 1.08995 * 109.47376 * 60.00018 * 18 17 16
50 50 H 1.09001 * 109.47126 * 299.99954 * 18 17 16
51 51 H 0.97003 * 119.99979 * 359.97438 * 21 19 18
52 52 H 0.96999 * 120.00000 * 0.27554 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 6 4.1484 2.5615 0.0000
6 8 3.4355 3.5426 0.0004
7 7 5.4887 2.7024 0.0001
8 6 6.3648 1.5290 -0.1202
9 6 7.3377 1.7571 -1.2813
10 6 8.0813 3.0773 -1.0667
11 6 7.0795 4.2345 -1.0416
12 1 7.6115 5.1766 -0.9095
13 6 6.3055 4.2650 -2.3611
14 6 6.1016 4.0323 0.1200
15 1 6.6384 4.1033 1.0661
16 6 5.0126 5.1056 0.0665
17 7 5.6283 6.4341 0.1845
18 6 4.6262 7.4954 0.0182
19 6 5.2935 8.8407 0.1447
20 8 6.4864 8.9087 0.3532
21 7 4.5648 9.9682 0.0260
22 6 5.1718 11.1921 0.1416
23 1 6.2340 11.2526 0.3273
24 6 4.4206 12.3545 0.0187
25 7 3.1293 12.2808 -0.2137
26 14 5.2477 14.0220 0.1754
27 1 4.2362 15.0948 -0.0005
28 1 5.8684 14.1424 1.5191
29 1 6.2963 14.1545 -0.8678
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.6885 1.8464 0.8900
34 1 1.6885 1.8464 -0.8900
35 1 3.8567 0.6440 -0.8908
36 1 3.8574 0.6437 0.8892
37 1 6.9252 1.3950 0.8050
38 1 5.7624 0.6416 -0.3144
39 1 8.0553 0.9376 -1.3210
40 1 6.7822 1.8000 -2.2183
41 1 8.6166 3.0426 -0.1178
42 1 8.7918 3.2302 -1.8790
43 1 5.5886 5.0858 -2.3429
44 1 7.0017 4.4089 -3.1874
45 1 5.7750 3.3221 -2.4931
46 1 4.3132 4.9549 0.8890
47 1 4.4792 5.0352 -0.8814
48 1 6.1146 6.5306 1.0632
49 1 3.8603 7.3956 0.7873
50 1 4.1660 7.4096 -0.9661
51 1 3.6108 9.9138 -0.1412
52 1 2.6998 11.4150 -0.2954
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482478828.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:25:13
Heat of formation + Delta-G solvation = -130.713728 kcal
Electronic energy + Delta-G solvation = -30976.158884 eV
Core-core repulsion = 26782.102542 eV
Total energy + Delta-G solvation = -4194.056342 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 341.215 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.91747 -40.32630 -39.24053 -38.47654 -36.99906 -36.18257 -34.64490 -33.31628
-33.00822 -32.34949 -29.47626 -27.99341 -27.47393 -26.78867 -25.81927 -24.78180
-24.30726 -22.48246 -21.57863 -20.97526 -19.99332 -19.42153 -18.63238 -17.87126
-17.51638 -17.23229 -16.92787 -16.84673 -16.55960 -16.39628 -15.94717 -15.78443
-15.55669 -15.33268 -15.23816 -15.04140 -14.76914 -14.54346 -14.27278 -14.07994
-13.80621 -13.53213 -13.40645 -13.25199 -12.98388 -12.88733 -12.73789 -12.66150
-12.41816 -12.37881 -12.14152 -11.92544 -11.91621 -11.88574 -11.86451 -11.53898
-11.39067 -11.20721 -10.70524 -10.52349 -10.39875 -10.13676 -9.62303 -9.21172
-8.95242 -6.09024 1.51096 1.53104 1.56428 1.77366 1.82225 1.97366
2.39503 2.70738 2.91020 3.14531 3.41941 3.59072 3.74673 3.81323
3.92032 4.00860 4.07894 4.09413 4.11703 4.21274 4.24692 4.33996
4.42300 4.45453 4.49054 4.49835 4.52236 4.58852 4.67084 4.74599
4.79544 4.80347 4.83301 4.86495 4.90780 4.98416 5.00339 5.15029
5.22423 5.30636 5.35722 5.52876 5.55645 5.65369 5.88542 5.94599
6.10326 6.31068 6.42470 6.55046 6.71466 7.14152 7.41220 7.88306
8.52144
Molecular weight = 341.21amu
Principal moments of inertia in cm(-1)
A = 0.012649 B = 0.002382 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2213.059379 B =11751.535473 C =13588.791088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.407 6.407
3 C 0.077 3.923
4 C -0.129 4.129
5 C 0.510 3.490
6 O -0.573 6.573
7 N -0.600 5.600
8 C 0.101 3.899
9 C -0.132 4.132
10 C -0.114 4.114
11 C -0.091 4.091
12 H 0.069 0.931
13 C -0.135 4.135
14 C 0.159 3.841
15 H 0.074 0.926
16 C 0.081 3.919
17 N -0.677 5.677
18 C 0.073 3.927
19 C 0.445 3.555
20 O -0.612 6.612
21 N -0.588 5.588
22 C -0.410 4.410
23 H 0.075 0.925
24 C -0.044 4.044
25 N -0.917 5.917
26 Si 1.136 2.864
27 H -0.272 1.272
28 H -0.271 1.271
29 H -0.272 1.272
30 H 0.105 0.895
31 H 0.045 0.955
32 H 0.045 0.955
33 H 0.046 0.954
34 H 0.046 0.954
35 H 0.122 0.878
36 H 0.121 0.879
37 H 0.086 0.914
38 H 0.112 0.888
39 H 0.100 0.900
40 H 0.066 0.934
41 H 0.069 0.931
42 H 0.068 0.932
43 H 0.033 0.967
44 H 0.054 0.946
45 H 0.058 0.942
46 H 0.037 0.963
47 H 0.075 0.925
48 H 0.340 0.660
49 H 0.056 0.944
50 H 0.093 0.907
51 H 0.383 0.617
52 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.453 -31.061 -0.899 31.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.326 6.326
3 C 0.000 4.000
4 C -0.168 4.168
5 C 0.299 3.701
6 O -0.453 6.453
7 N -0.333 5.333
8 C -0.020 4.020
9 C -0.170 4.170
10 C -0.152 4.152
11 C -0.111 4.111
12 H 0.088 0.912
13 C -0.192 4.192
14 C 0.055 3.945
15 H 0.092 0.908
16 C -0.047 4.047
17 N -0.311 5.311
18 C -0.060 4.060
19 C 0.233 3.767
20 O -0.498 6.498
21 N -0.227 5.227
22 C -0.539 4.539
23 H 0.093 0.907
24 C -0.242 4.242
25 N -0.557 5.557
26 Si 0.955 3.045
27 H -0.197 1.197
28 H -0.196 1.196
29 H -0.197 1.197
30 H 0.123 0.877
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.064 0.936
34 H 0.065 0.935
35 H 0.140 0.860
36 H 0.139 0.861
37 H 0.104 0.896
38 H 0.130 0.870
39 H 0.119 0.881
40 H 0.084 0.916
41 H 0.088 0.912
42 H 0.086 0.914
43 H 0.052 0.948
44 H 0.073 0.927
45 H 0.077 0.923
46 H 0.055 0.945
47 H 0.093 0.907
48 H 0.158 0.842
49 H 0.074 0.926
50 H 0.112 0.888
51 H 0.217 0.783
52 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 1.908 -29.049 -1.458 29.148
hybrid contribution -1.096 -1.051 0.741 1.690
sum 0.812 -30.100 -0.717 30.119
Atomic orbital electron populations
1.22928 0.79399 1.04067 1.00610 1.87755 1.21443 1.27827 1.95614
1.22105 0.92978 0.84137 1.00781 1.21491 0.94170 0.93866 1.07275
1.20920 0.82122 0.91658 0.75351 1.90773 1.62070 1.41014 1.51406
1.48184 1.05286 1.07937 1.71856 1.22113 0.92980 0.86954 0.99950
1.21954 0.98742 0.97936 0.98397 1.21577 0.97116 0.93893 1.02600
1.21332 0.95991 0.99594 0.94169 0.91221 1.21745 0.99755 1.00840
0.96832 1.21115 0.93337 0.81260 0.98783 0.90801 1.22463 0.93948
0.86053 1.02213 1.60079 1.27913 1.01716 1.41398 1.21376 0.93552
0.88495 1.02546 1.20725 0.87531 0.86283 0.82158 1.90478 1.16739
1.87753 1.54822 1.42012 1.10200 1.05672 1.64779 1.20549 0.96336
0.84940 1.52061 0.90660 1.27927 0.95490 1.06628 0.94185 1.70967
1.10315 1.27464 1.46905 0.82617 0.74385 0.69597 0.77899 1.19691
1.19620 1.19730 0.87688 0.93673 0.93630 0.93580 0.93521 0.86004
0.86074 0.89625 0.86977 0.88148 0.91560 0.91225 0.91353 0.94765
0.92720 0.92326 0.94514 0.90682 0.84158 0.92613 0.88845 0.78304
0.93129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 11.01 113.37 1.25 1.57 16
2 O -0.41 -6.91 10.70 -148.98 -1.59 -8.51 16
3 C 0.08 1.35 5.23 71.98 0.38 1.72 16
4 C -0.13 -1.69 4.48 29.85 0.13 -1.56 16
5 C 0.51 10.20 7.61 87.66 0.67 10.86 16
6 O -0.57 -16.32 11.39 -3.02 -0.03 -16.35 16
7 N -0.60 -10.24 2.42 -795.04 -1.93 -12.17 16
8 C 0.10 0.90 6.33 86.36 0.55 1.45 16
9 C -0.13 -1.25 5.74 30.67 0.18 -1.07 16
10 C -0.11 -1.67 5.42 30.63 0.17 -1.50 16
11 C -0.09 -2.01 2.58 -10.70 -0.03 -2.04 16
12 H 0.07 1.95 7.81 -2.39 -0.02 1.93 16
13 C -0.13 -3.14 8.21 71.98 0.59 -2.55 16
14 C 0.16 3.59 2.88 44.97 0.13 3.72 16
15 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16
16 C 0.08 2.41 3.04 86.30 0.26 2.67 16
17 N -0.68 -23.80 5.47 -517.94 -2.84 -26.64 16
18 C 0.07 2.86 6.16 85.56 0.53 3.39 16
19 C 0.45 22.56 7.82 87.66 0.69 23.24 16
20 O -0.61 -35.34 15.78 -3.06 -0.05 -35.39 16
21 N -0.59 -31.64 5.28 -306.99 -1.62 -33.26 16
22 C -0.41 -24.29 9.68 84.04 0.81 -23.47 16
23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16
24 C -0.04 -2.50 5.50 84.93 0.47 -2.03 16
25 N -0.92 -53.09 13.68 21.66 0.30 -52.79 16
26 Si 1.14 49.79 29.92 68.60 2.05 51.85 16
27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16
28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16
29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16
31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16
33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16
34 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16
35 H 0.12 1.11 7.47 -2.39 -0.02 1.09 16
36 H 0.12 1.13 8.12 -2.39 -0.02 1.11 16
37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
38 H 0.11 0.46 5.96 -2.39 -0.01 0.44 16
39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16
40 H 0.07 0.73 6.34 -2.38 -0.02 0.72 16
41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
43 H 0.03 0.99 6.35 -2.39 -0.02 0.97 16
44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
45 H 0.06 1.22 5.97 -2.39 -0.01 1.20 16
46 H 0.04 1.20 6.46 -2.39 -0.02 1.19 16
47 H 0.07 2.47 5.20 -2.39 -0.01 2.45 16
48 H 0.34 12.25 8.49 -89.70 -0.76 11.49 16
49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
50 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16
51 H 0.38 19.22 6.73 -92.71 -0.62 18.59 16
52 H 0.26 14.56 6.77 -92.71 -0.63 13.94 16
Total: -1.00 -76.88 402.22 0.74 -76.14
By element:
Atomic # 1 Polarization: 43.03 SS G_CDS: -0.31 Total: 42.72 kcal
Atomic # 6 Polarization: 7.63 SS G_CDS: 6.76 Total: 14.39 kcal
Atomic # 7 Polarization: -118.77 SS G_CDS: -6.09 Total: -124.86 kcal
Atomic # 8 Polarization: -58.57 SS G_CDS: -1.68 Total: -60.25 kcal
Atomic # 14 Polarization: 49.79 SS G_CDS: 2.05 Total: 51.85 kcal
Total: -76.88 0.74 -76.14 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482478828.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.572 kcal
(2) G-P(sol) polarization free energy of solvation -76.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds